Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	A	N	A	R	S	H	A	V	L	T	T	E	S	K	V	T	I	R	G	Q	T	T	I	P	A	P	V	R	E	A	L	K	L	K	P	G	Q	D	S	I	H	Y	E	I	L	P	G	G	Q	V	F	M	C	R	L	G	D	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?						?	?	?	?	?	?	?																		?	?																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Sequence		Q	E	D	H	T	M	N	A	F	L	R	F	L	D	A	D	I	Q	N	N	P	Q	K	T	R	P	F	N	I	Q	Q	G	K	K	L	V	A	G	M	D	V	N	I	D	D	E	I	G	D	D	E
Secondary structure
SS confidence
Disorder		?	?	?		?														?	?	?	?	?	?	?	?	?	?									?		?	?					?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2w1t chain B Region: 16 - 59 Aligned: 43 Modelled: 44 Confidence: 98.6% Identity: 21% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt Phyre2 PDB 2l66 chain B Region: 10 - 61 Aligned: 51 Modelled: 52 Confidence: 98.2% Identity: 29% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2ro5 chain B Region: 16 - 56 Aligned: 40 Modelled: 41 Confidence: 97.5% Identity: 23% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt Phyre2 PDB 2fy9 chain A domain 1 Region: 16 - 56 Aligned: 39 Modelled: 41 Confidence: 97.2% Identity: 26% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 1yfb chain A domain 1 Region: 16 - 56 Aligned: 39 Modelled: 41 Confidence: 97.1% Identity: 21% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2glw chain A Region: 13 - 46 Aligned: 33 Modelled: 34 Confidence: 97.0% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii Phyre2 PDB 1ub4 chain C Region: 23 - 71 Aligned: 46 Modelled: 49 Confidence: 95.6% Identity: 22% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1mvf chain D Region: 23 - 57 Aligned: 33 Modelled: 35 Confidence: 94.9% Identity: 24% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1n0e chain A Region: 12 - 105 Aligned: 79 Modelled: 93 Confidence: 90.6% Identity: 14% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Hypothetical protein MraZ Phyre2 PDB 1n0f chain F Region: 12 - 105 Aligned: 79 Modelled: 93 Confidence: 90.4% Identity: 14% PDB header:biosynthetic protein Chain: F: PDB Molecule:protein mraz; PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif Phyre2 PDB 2d9r chain A domain 1 Region: 23 - 48 Aligned: 25 Modelled: 26 Confidence: 84.6% Identity: 32% Fold: Double-split beta-barrel Superfamily: AF2212/PG0164-like Family: PG0164-like Phyre2 PDB 1yle chain A domain 1 Region: 10 - 45 Aligned: 35 Modelled: 36 Confidence: 83.7% Identity: 14% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: AstA-like Phyre2 PDB 2vbu chain A domain 1 Region: 26 - 48 Aligned: 22 Modelled: 23 Confidence: 78.2% Identity: 41% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: CTP-dependent riboflavin kinase-like Phyre2 PDB 2c45 chain F Region: 4 - 55 Aligned: 51 Modelled: 52 Confidence: 76.0% Identity: 20% PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase Phyre2 PDB 3o27 chain B Region: 25 - 55 Aligned: 31 Modelled: 31 Confidence: 73.8% Identity: 29% PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx Phyre2 PDB 1ppy chain A Region: 4 - 55 Aligned: 51 Modelled: 52 Confidence: 71.6% Identity: 18% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Pyruvoyl dependent aspartate decarboxylase, ADC Phyre2 PDB 1pt1 chain B Region: 4 - 55 Aligned: 51 Modelled: 52 Confidence: 71.6% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine Phyre2 PDB 2l55 chain A Region: 34 - 60 Aligned: 26 Modelled: 27 Confidence: 67.6% Identity: 27% PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans Phyre2 PDB 1zeq chain X Region: 34 - 61 Aligned: 27 Modelled: 28 Confidence: 67.1% Identity: 19% PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli Phyre2 PDB 2pjh chain B Region: 6 - 64 Aligned: 58 Modelled: 59 Confidence: 61.1% Identity: 16% PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex Phyre2 1 c2w1tB_ 2 c2l66B_ 3 c2ro5B_ 4 d2fy9a1 5 d1yfba1 6 c2glwA_ 7 d1ub4c_ 8 d1mvfd_ 9 d1n0ea_ 10 c1n0fF_ 11 d2d9ra1 12 d1ylea1 13 d2vbua1 14 c2c45F_ 15 c3o27B_ 16 d1ppya_ 17 c1pt1B_ 18 c2l55A_ 19 c1zeqX_ 20 c2pjhB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2w1tB_ 98.6 21 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 2 c2l66B_ 98.2 29 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 3 c2ro5B_ 97.5 23 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 4 d2fy9a1 97.2 26 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 5 d1yfba1 97.1 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 6 c2glwA_ 97.0 27 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 7 d1ub4c_ 95.6 22 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 8 d1mvfd_ 94.9 24 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 9 d1n0ea_ 90.6 14 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Hypothetical protein MraZ 10 c1n0fF_ 90.4 14 PDB header:biosynthetic protein Chain: F: PDB Molecule:protein mraz; PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif 11 d2d9ra1 84.6 32 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 12 d1ylea1 83.7 14 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 13 d2vbua1 78.2 41 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 14 c2c45F_ 76.0 20 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 15 c3o27B_ 73.8 29 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 16 d1ppya_ 71.6 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 17 c1pt1B_ 71.6 16 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 18 c2l55A_ 67.6 27 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 19 c1zeqX_ 67.1 19 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 20 c2pjhB_ 61.1 16 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 21 d2p19a1 not modelled 55.5 17 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 22 c2kdoA_ not modelled 49.4 18 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 23 d2c4ka1 not modelled 48.4 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 24 d2fa1a1 not modelled 48.3 14 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 25 c3ll7A_ not modelled 47.0 15 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase pg_1098 from2 porphyromonas gingivalis w83 26 d1u9ya1 not modelled 45.9 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 27 d2ikka1 not modelled 44.2 17 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 28 c2ra5A_ not modelled 44.0 19 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of the putative transcriptional regulator2 from streptomyces coelicolor 29 d2ra5a1 not modelled 44.0 19 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 30 d1cz5a1 not modelled 42.1 20 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 31 d3cnva1 not modelled 41.8 24 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 32 c1zc1A_ not modelled 41.5 24 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 33 d2pkha1 not modelled 40.8 12 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 34 c3pjyB_ not modelled 40.5 25 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 35 c3m7aA_ not modelled 39.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of2 unknown function from novosphingobium aromaticivorans dsm3 12444 at 1.22 a resolution 36 d3bwga2 not modelled 36.8 20 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 37 d1dkua1 not modelled 35.4 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 38 c1cz5A_ not modelled 34.8 18 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 39 d1vlfm1 not modelled 33.4 28 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 40 c1zzvA_ not modelled 33.4 15 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. 41 d2axti1 not modelled 32.5 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 42 c2yujA_ not modelled 31.3 16 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 43 c2ki8A_ not modelled 30.5 28 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 44 c2k4vA_ not modelled 30.5 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 45 d1zq1a1 not modelled 28.3 14 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 46 d1we0a1 not modelled 27.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 47 d2fug21 not modelled 24.8 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 48 d2f23a2 not modelled 24.6 21 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 49 c2jwlB_ not modelled 24.6 14 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 50 c3lheA_ not modelled 23.7 23 PDB header:transcription regulator Chain: A: PDB Molecule:gntr family transcriptional regulator; PDBTitle: the crystal structure of the c-terminal domain of a gntr2 family transcriptional regulator from bacillus anthracis3 str. sterne 51 d1yexa1 not modelled 23.4 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 52 c2oqkA_ not modelled 23.4 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 53 c1q6xA_ not modelled 23.0 9 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: crystal structure of rat choline acetyltransferase 54 d1u0la1 not modelled 23.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 55 d1zvvj1 not modelled 22.1 15 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 56 c2c4kD_ not modelled 22.0 11 PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) 57 c3hvzB_ not modelled 21.7 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 58 d1qr5a_ not modelled 21.7 13 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 59 d2ifea_ not modelled 21.6 14 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 60 d1ka5a_ not modelled 21.5 13 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 61 c1t95A_ not modelled 21.5 12 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 62 d3d31a1 not modelled 20.8 18 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 63 c3hfiA_ not modelled 20.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative regulator; PDBTitle: the crystal structure of the putative regulator from escherichia coli2 cft073 64 c3dahB_ not modelled 20.3 11 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei 65 c3ho6B_ not modelled 19.9 16 PDB header:toxin Chain: B: PDB Molecule:toxin a; PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a 66 c3f8lC_ not modelled 19.7 11 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional repressor phnf; PDBTitle: crystal structure of the effector domain of phnf from mycobacterium2 smegmatis 67 c2wbmA_ not modelled 19.4 16 PDB header:rna-binding protein Chain: A: PDB Molecule:ribosome maturation protein sdo1 homolog; PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus 68 c3ougA_ not modelled 19.4 10 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 69 d1mo1a_ not modelled 19.4 17 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 70 d1ptfa_ not modelled 19.2 15 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 71 d2hpra_ not modelled 18.8 17 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 72 c3bmbB_ not modelled 18.7 36 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 73 d1hr0w_ not modelled 18.6 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 d1y7qa1 not modelled 18.4 19 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:SCAN domain 75 d2jioa1 not modelled 17.6 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 76 d1jt8a_ not modelled 17.5 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 77 d1ihra_ not modelled 16.8 19 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 78 d1g8ka1 not modelled 16.8 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 79 d2eifa2 not modelled 16.5 37 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 80 c3zvkG_ not modelled 16.5 13 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 81 c3le1B_ not modelled 16.4 11 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, hpr-related proteins; PDBTitle: crystal structure of apohpr monomer from thermoanaerobacter2 tengcongensis 82 c3lotC_ not modelled 16.3 39 PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution 83 c1u9yD_ not modelled 16.3 16 PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii 84 c3i4oA_ not modelled 16.1 26 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 85 c3efhB_ not modelled 15.9 8 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 86 d1kqfa1 not modelled 15.8 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 87 c1h0hA_ not modelled 15.5 13 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 88 d1kbla3 not modelled 15.3 17 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Pyruvate phosphate dikinase, N-terminal domain 89 d2iv2x1 not modelled 15.2 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 90 c2pn0D_ not modelled 14.6 38 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 91 c1dkrB_ not modelled 14.6 8 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 92 d1h9ma2 not modelled 14.5 32 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 93 d1t9ha1 not modelled 14.5 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 94 c3lpnB_ not modelled 14.5 21 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp). 95 d2nzul1 not modelled 14.5 18 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 96 c3e02A_ not modelled 14.4 28 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 97 c1h9mB_ not modelled 14.3 27 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 98 c1vlfQ_ not modelled 14.2 28 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 99 d2etna2 not modelled 13.9 21 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0