Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	K	N	I	L	A	I	Q	S	H	V	V	Y	G	H	A	G	N	S	A	A	E	F	P	M	R	R	L	G	A	N	V	W	P	L	N	T	V	Q	F	S	N	H	T	Q	Y	G	K	W	T	G	C	V	M	P	P	S	H	L
Secondary structure
SS confidence
Disorder		?	?	?	?								?	?	?	?																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	E	I	V	Q	G	I	A	A	I	D	K	L	H	T	C	D	A	V	L	S	G	Y	L	G	S	A	E	Q	G	E	H	I	L	G	I	V	R	Q	V	K	A	A	N	P	Q	A	K	Y	F	C	D	P	V	M	G	H	P	E	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	C	I	V	A	P	G	V	A	E	F	H	V	R	H	G	L	P	A	S	D	I	I	A	P	N	L	V	E	L	E	I	L	C	E	H	A	V	N	N	V	E	E	A	V	L	A	A	R	E	L	I	A	Q	G	P	Q	I	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	K	H	L	A	R	A	G	Y	S	R	D	R	F	E	M	L	L	V	T	A	D	E	A	W	H	I	S	R	P	L	V	D	F	G	M	R	Q	P	V	G	V	G	D	V	T	S	G	L	L	L	V	K	L	L	Q	G	A	T	L
Secondary structure
SS confidence
Disorder							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Sequence		Q	E	A	L	E	H	V	T	A	A	V	Y	E	I	M	V	T	T	K	A	M	Q	E	Y	E	L	Q	V	V	A	A	Q	D	R	I	A	K	P	E	H	Y	F	S	A	T	K	L
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vi9 chain A Region: 1 - 287 Aligned: 286 Modelled: 287 Confidence: 100.0% Identity: 97% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 1lhp chain A Region: 3 - 287 Aligned: 284 Modelled: 285 Confidence: 100.0% Identity: 32% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 3mbj chain A Region: 2 - 277 Aligned: 266 Modelled: 276 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) Phyre2 PDB 2ddm chain A Region: 3 - 268 Aligned: 255 Modelled: 266 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution Phyre2 PDB 3ibq chain A Region: 3 - 263 Aligned: 249 Modelled: 261 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp Phyre2 PDB 2i5b chain C Region: 2 - 268 Aligned: 256 Modelled: 264 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution Phyre2 PDB 3rm5 chain B Region: 3 - 262 Aligned: 237 Modelled: 260 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast Phyre2 PDB 1ub0 chain A Region: 2 - 264 Aligned: 238 Modelled: 263 Confidence: 100.0% Identity: 26% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 1jxh chain A Region: 2 - 264 Aligned: 232 Modelled: 263 Confidence: 100.0% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 2abq chain A domain 1 Region: 15 - 272 Aligned: 228 Modelled: 234 Confidence: 99.9% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2jg5 chain B Region: 15 - 272 Aligned: 229 Modelled: 241 Confidence: 99.9% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus Phyre2 PDB 2afb chain A domain 1 Region: 2 - 277 Aligned: 249 Modelled: 260 Confidence: 99.9% Identity: 16% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3cqd chain B Region: 2 - 257 Aligned: 228 Modelled: 241 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 1rkd chain A Region: 15 - 277 Aligned: 231 Modelled: 250 Confidence: 99.9% Identity: 24% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2qcv chain A Region: 15 - 257 Aligned: 211 Modelled: 228 Confidence: 99.8% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2f02 chain A domain 1 Region: 15 - 257 Aligned: 217 Modelled: 243 Confidence: 99.8% Identity: 20% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 2 - 277 Aligned: 228 Modelled: 261 Confidence: 99.8% Identity: 22% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 3pl2 chain D Region: 15 - 276 Aligned: 224 Modelled: 244 Confidence: 99.8% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 3loo chain C Region: 13 - 256 Aligned: 207 Modelled: 229 Confidence: 99.8% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate Phyre2 PDB 2xtb chain A Region: 15 - 257 Aligned: 226 Modelled: 243 Confidence: 99.8% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator Phyre2 1 d1vi9a_ 2 d1lhpa_ 3 c3mbjA_ 4 c2ddmA_ 5 c3ibqA_ 6 c2i5bC_ 7 c3rm5B_ 8 d1ub0a_ 9 d1jxha_ 10 d2abqa1 11 c2jg5B_ 12 d2afba1 13 c3cqdB_ 14 d1rkda_ 15 c2qcvA_ 16 d2f02a1 17 c2nwhA_ 18 c3pl2D_ 19 c3looC_ 20 c2xtbA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vi9a_ 100.0 97 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 2 d1lhpa_ 100.0 32 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 3 c3mbjA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 4 c2ddmA_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 5 c3ibqA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 6 c2i5bC_ 100.0 18 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 7 c3rm5B_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 8 d1ub0a_ 100.0 26 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 9 d1jxha_ 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 10 d2abqa1 99.9 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 11 c2jg5B_ 99.9 18 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 12 d2afba1 99.9 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 13 c3cqdB_ 99.9 19 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 14 d1rkda_ 99.9 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 15 c2qcvA_ 99.8 18 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 16 d2f02a1 99.8 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 17 c2nwhA_ 99.8 22 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 18 c3pl2D_ 99.8 20 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 19 c3looC_ 99.8 20 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 20 c2xtbA_ 99.8 14 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 21 c3kzhA_ not modelled 99.8 16 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 22 c3iq0B_ not modelled 99.8 17 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 23 c2jg1C_ not modelled 99.8 16 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 24 c2pkkA_ not modelled 99.8 14 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 25 d1v19a_ not modelled 99.8 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 26 c2qhpA_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 27 c3ktnA_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 28 c3lhxA_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 29 d2fv7a1 not modelled 99.8 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 30 c2rbcA_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 31 c2c49A_ not modelled 99.8 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 32 c3julA_ not modelled 99.8 22 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 33 d1bx4a_ not modelled 99.8 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 34 c3in1A_ not modelled 99.8 17 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 35 d2ajra1 not modelled 99.8 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 36 d1tyya_ not modelled 99.8 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 37 c3b1qD_ not modelled 99.8 16 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 38 d1kyha_ not modelled 99.7 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 39 c3dzvB_ not modelled 99.7 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 40 c1tz6B_ not modelled 99.7 17 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 41 c2varB_ not modelled 99.7 17 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 42 d2ax3a1 not modelled 99.7 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 43 c2absA_ not modelled 99.7 13 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 44 d2absa1 not modelled 99.7 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 45 d1vk4a_ not modelled 99.7 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 46 d1vm7a_ not modelled 99.7 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 47 c2r3bA_ not modelled 99.7 18 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 48 c3go6B_ not modelled 99.7 19 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 49 c3b3lC_ not modelled 99.7 16 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 50 c3hj6B_ not modelled 99.7 12 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 51 d2dcna1 not modelled 99.7 12 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 52 d1v8aa_ not modelled 99.6 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 53 c3lkiA_ not modelled 99.6 21 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 54 c3i3yB_ not modelled 99.6 19 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 55 c3kd6B_ not modelled 99.6 15 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 56 c3bf5A_ not modelled 99.6 17 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 57 c2ax3A_ not modelled 99.6 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 58 c3gbuD_ not modelled 99.6 17 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 59 c3bgkA_ not modelled 99.6 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 60 d1ekqa_ not modelled 99.5 10 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 61 c3nm3D_ not modelled 99.4 12 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 62 c3k5wA_ not modelled 99.2 16 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 63 d1gc5a_ not modelled 95.1 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 d1u2xa_ not modelled 94.7 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 65 c3drwA_ not modelled 94.3 23 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 66 d1l2la_ not modelled 88.3 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 67 d1ua4a_ not modelled 80.1 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 68 c3g8cB_ not modelled 80.0 15 PDB header:ligase Chain: B: PDB Molecule:biotin carboxylase; PDBTitle: crystal stucture of biotin carboxylase in complex with2 biotin, bicarbonate, adp and mg ion 69 c3sc6F_ not modelled 76.3 13 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 70 c3ay3C_ not modelled 74.8 19 PDB header:oxidoreductase Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens 71 c2weuD_ not modelled 74.5 23 PDB header:antifungal protein Chain: D: PDB Molecule:tryptophan 5-halogenase; PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan 72 c1ulzA_ not modelled 73.1 15 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 73 c3dhnA_ not modelled 70.6 19 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 74 c2gpwC_ not modelled 69.6 15 PDB header:ligase Chain: C: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of the biotin carboxylase subunit, f363a2 mutant, of acetyl-coa carboxylase from escherichia coli. 75 d2b7oa1 not modelled 60.8 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 76 c3d8xB_ not modelled 56.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 77 d1seza1 not modelled 55.1 31 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 78 c2a87A_ not modelled 54.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase 79 c3gpiA_ not modelled 54.2 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 80 d1f0ya2 not modelled 54.1 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 81 d1qrda_ not modelled 52.1 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 82 d2g0ta1 not modelled 50.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 83 d2d1pb1 not modelled 49.0 24 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 84 c3kd9B_ not modelled 48.9 37 PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii 85 c1y80A_ not modelled 48.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 86 c2dlnA_ not modelled 45.9 23 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 87 c1apzB_ not modelled 45.5 18 PDB header:complex (hydrolase/peptide) Chain: B: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase complex with reaction product 88 c3ab1B_ not modelled 44.5 23 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase 89 c2q1wC_ not modelled 44.5 23 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 90 c3c1oA_ not modelled 43.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 91 c3g5rA_ not modelled 42.4 37 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 92 d2gtad1 not modelled 42.4 30 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 93 c3crcB_ not modelled 41.5 19 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 94 c2dzdB_ not modelled 41.3 13 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase 95 c2r60A_ not modelled 39.7 16 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 96 c2gacD_ not modelled 39.2 24 PDB header:hydrolase Chain: D: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 97 d2gtaa1 not modelled 38.4 30 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 98 c3p19A_ not modelled 37.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein 99 c2q0lA_ not modelled 37.3 33 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ 100 c3kipU_ not modelled 34.8 30 PDB header:lyase Chain: U: PDB Molecule:3-dehydroquinase, type ii; PDBTitle: crystal structure of type-ii 3-dehydroquinase from c. albicans 101 c3ic9D_ not modelled 33.7 19 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. 102 c2eq8E_ not modelled 33.3 33 PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 103 c3kpgA_ not modelled 32.5 30 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone 104 c3ouzA_ not modelled 32.3 19 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 105 c3rfxB_ not modelled 32.1 16 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 106 c2obnA_ not modelled 31.0 13 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 107 c3allA_ not modelled 29.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a 108 c1xdiA_ not modelled 29.3 23 PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis 109 d2hy5b1 not modelled 28.9 20 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 110 c2qzsA_ not modelled 28.7 19 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 111 d1bxka_ not modelled 28.1 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 112 d1oc2a_ not modelled 28.0 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 113 c3ezxA_ not modelled 27.4 17 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 114 c2zktB_ not modelled 27.4 16 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 115 c3ia7A_ not modelled 27.3 22 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 116 d1d4aa_ not modelled 27.2 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 117 c1ps9A_ not modelled 27.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 118 c1v59B_ not modelled 25.6 30 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 119 d1hdoa_ not modelled 25.2 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 120 c3u9sE_ not modelled 24.9 14 PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0