Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	R	L	L	K	R	P	S	L	N	L	L	A	W	L	L	L	A	A	F	Y	I	S	I	C	L	N	I	A	F	F	K	Q	V	L	Q	A	L	P	L	D	S	L	H	N	V	L	V	F	L	S	M	P	V	V	A	F	S
Secondary structure
SS confidence
Disorder		?	?	?			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	N	I	V	L	T	L	S	S	F	L	W	L	N	R	P	L	A	C	L	F	I	L	V	G	A	A	A	Q	Y	F	I	M	T	Y	G	I	V	I	D	R	S	M	I	A	N	I	I	D	T	T	P	A	E	S	Y	A	L	M
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	P	Q	M	L	L	T	L	G	F	S	G	V	L	A	A	L	I	A	C	W	I	K	I	K	P	A	T	S	R	L	R	S	V	L	F	R	G	A	N	I	L	V	S	V	L	L	I	L	L	V	A	A	L	F	Y	K	D	Y	A
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	L	F	R	N	N	K	E	L	V	K	S	L	S	P	S	N	S	I	V	A	S	W	S	W	Y	S	H	Q	R	L	A	N	L	P	L	V	R	I	G	E	D	A	H	R	N	P	L	M	Q	N	E	K	R	K	N	L	T	I	L
Secondary structure
SS confidence
Disorder																?																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	V	G	E	T	S	R	A	E	N	F	S	L	N	G	Y	P	R	E	T	N	P	R	L	A	K	D	N	V	V	Y	F	P	N	T	A	S	C	G	T	A	T	A	V	S	V	P	C	M	F	S	D	M	P	R	E	H	Y	K	E
Secondary structure
SS confidence
Disorder						?																																																?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	L	A	Q	H	Q	E	G	V	L	D	I	I	Q	R	A	G	I	N	V	L	W	N	D	N	D	G	G	C	K	G	A	C	D	R	V	P	H	Q	N	V	T	A	L	N	L	P	D	Q	C	I	N	G	E	C	Y	D	E	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																					?	?	?																		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	H	G	L	E	E	Y	I	N	N	L	Q	G	D	G	V	I	V	L	H	T	I	G	S	H	G	P	T	Y	Y	N	R	Y	P	P	Q	F	R	K	F	T	P	T	C	D	T	N	E	I	Q	T	C	T	K	E	Q	L	V	N	T
Secondary structure
SS confidence
Disorder																																															?	?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		Y	D	N	T	L	V	Y	V	D	Y	I	V	D	K	A	I	N	L	L	K	E	H	Q	D	K	F	T	T	S	L	V	Y	L	S	D	H	G	E	S	L	G	E	N	G	I	Y	L	H	G	L	P	Y	A	I	A	P	D	S	Q	K
Secondary structure
SS confidence
Disorder																							?	?																			?	?	?			?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		Q	V	P	M	L	L	W	L	S	E	D	Y	Q	K	R	Y	Q	V	D	Q	N	C	L	Q	K	Q	A	Q	T	Q	H	Y	S	Q	D	N	L	F	S	T	L	L	G	L	T	G	V	E	T	K	Y	Y	Q	A	A	D	D	I	L	Q
Secondary structure
SS confidence
Disorder												?	?		?		?		?	?									?																							?						?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		T	C	R	R	V	S	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2w8d chain B Region: 209 - 544 Aligned: 313 Modelled: 336 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis Phyre2 PDB 2w5t chain A Region: 208 - 544 Aligned: 314 Modelled: 326 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Phyre2 PDB 3lxq chain B Region: 208 - 547 Aligned: 302 Modelled: 327 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Phyre2 PDB 2qzu chain A Region: 228 - 543 Aligned: 302 Modelled: 306 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 Phyre2 PDB 3ed4 chain A Region: 235 - 539 Aligned: 292 Modelled: 305 Confidence: 100.0% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli Phyre2 PDB 1fsu chain A Region: 233 - 540 Aligned: 283 Modelled: 308 Confidence: 100.0% Identity: 10% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1auk chain A Region: 234 - 539 Aligned: 276 Modelled: 277 Confidence: 100.0% Identity: 12% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 3b5q chain B Region: 234 - 539 Aligned: 295 Modelled: 306 Confidence: 100.0% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution Phyre2 PDB 1hdh chain A Region: 234 - 543 Aligned: 294 Modelled: 310 Confidence: 100.0% Identity: 16% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2vqr chain A Region: 235 - 540 Aligned: 290 Modelled: 306 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily Phyre2 PDB 1p49 chain A Region: 232 - 540 Aligned: 280 Modelled: 291 Confidence: 100.0% Identity: 16% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1o98 chain A domain 2 Region: 235 - 539 Aligned: 256 Modelled: 262 Confidence: 100.0% Identity: 13% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain Phyre2 PDB 2i09 chain A domain 1 Region: 233 - 540 Aligned: 238 Modelled: 267 Confidence: 99.9% Identity: 14% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: DeoB catalytic domain-like Phyre2 PDB 2zkt chain B Region: 235 - 528 Aligned: 278 Modelled: 282 Confidence: 99.9% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii Phyre2 PDB 3m8y chain C Region: 234 - 540 Aligned: 252 Modelled: 267 Confidence: 99.9% Identity: 18% PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation Phyre2 PDB 2gso chain B Region: 234 - 543 Aligned: 261 Modelled: 274 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate Phyre2 PDB 3q3q chain A Region: 229 - 538 Aligned: 267 Modelled: 271 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 Phyre2 PDB 2i09 chain A Region: 304 - 540 Aligned: 172 Modelled: 196 Confidence: 99.8% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Phyre2 PDB 3szz chain A Region: 232 - 522 Aligned: 255 Modelled: 255 Confidence: 99.8% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate Phyre2 PDB 2xr9 chain A Region: 225 - 544 Aligned: 250 Modelled: 253 Confidence: 99.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) Phyre2 1 c2w8dB_ 2 c2w5tA_ 3 c3lxqB_ 4 c2qzuA_ 5 c3ed4A_ 6 d1fsua_ 7 d1auka_ 8 c3b5qB_ 9 d1hdha_ 10 c2vqrA_ 11 d1p49a_ 12 d1o98a2 13 d2i09a1 14 c2zktB_ 15 c3m8yC_ 16 c2gsoB_ 17 c3q3qA_ 18 c2i09A_ 19 c3szzA_ 20 c2xr9A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2w8dB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 2 c2w5tA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. 3 c3lxqB_ 100.0 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 4 c2qzuA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 5 c3ed4A_ 100.0 12 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 6 d1fsua_ 100.0 10 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 7 d1auka_ 100.0 12 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 8 c3b5qB_ 100.0 12 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 9 d1hdha_ 100.0 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 10 c2vqrA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 11 d1p49a_ 100.0 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 12 d1o98a2 100.0 13 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 13 d2i09a1 99.9 14 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 14 c2zktB_ 99.9 12 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 15 c3m8yC_ 99.9 18 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 16 c2gsoB_ 99.9 16 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate 17 c3q3qA_ 99.9 22 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 18 c2i09A_ 99.8 18 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 19 c3szzA_ 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 20 c2xr9A_ 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 21 c2xrgA_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 22 d1ei6a_ not modelled 99.8 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase 23 c1o98A_ not modelled 99.7 14 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 24 c3igzB_ not modelled 99.6 12 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 25 c2d1gB_ not modelled 99.5 17 PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate 26 c2iucB_ not modelled 99.2 14 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 27 d1y6va1 not modelled 99.1 14 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 28 c1ew2A_ not modelled 99.0 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 29 d1zeda1 not modelled 99.0 14 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 30 d1k7ha_ not modelled 98.8 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 31 c3a52A_ not modelled 98.8 13 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 32 c2w0yB_ not modelled 98.7 17 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 33 c2x98A_ not modelled 98.7 18 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 34 c3e2dB_ not modelled 98.2 15 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 35 c3iddA_ not modelled 95.4 14 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728 36 d1b4ub_ not modelled 68.2 16 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 37 d1s1qa_ not modelled 67.1 21 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 38 d1s95a_ not modelled 41.2 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 39 c2xmoB_ not modelled 41.0 18 PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642 40 d1uzdc1 not modelled 33.2 17 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 41 d1l5oa_ not modelled 31.7 40 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 42 d1j33a_ not modelled 31.2 27 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 43 d1ej7s_ not modelled 27.9 17 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 44 d8ruci_ not modelled 23.4 17 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 45 c3uoaB_ not modelled 20.7 24 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: crystal structure of the malt1 paracaspase (p21 form) 46 c3bijC_ not modelled 19.4 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein gsu0716; PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13 47 d2b8ea1 not modelled 18.6 18 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 48 c2xokG_ not modelled 17.0 15 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 49 d1xo1a2 not modelled 16.9 12 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 50 d1fs0g_ not modelled 16.8 21 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 51 d1tfra2 not modelled 16.6 16 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 52 d2nvpa1 not modelled 16.3 23 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 53 d2hkja2 not modelled 14.8 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 54 d1uf3a_ not modelled 14.6 9 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 55 c1jaeA_ not modelled 14.4 16 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase 56 c3oaaO_ not modelled 14.3 17 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 57 c2ihnA_ not modelled 13.9 12 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 58 d1yj5a1 not modelled 12.8 21 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 59 d2bdua1 not modelled 12.5 14 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 60 d1usha2 not modelled 11.7 26 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 61 d1wdds_ not modelled 11.6 19 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 62 d1cmwa2 not modelled 11.5 8 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 63 c2w6jG_ not modelled 11.0 22 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 64 d1qopb_ not modelled 10.1 24 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 65 d1a3xa3 not modelled 10.1 19 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 66 c3kccA_ not modelled 9.9 15 PDB header:transcription Chain: A: PDB Molecule:catabolite gene activator; PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein 67 d2hy1a1 not modelled 9.9 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like 68 c2hy1A_ not modelled 9.9 20 PDB header:hydrolase Chain: A: PDB Molecule:rv0805; PDBTitle: crystal structure of rv0805 69 c2qe7G_ not modelled 9.7 37 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 70 c3ib7A_ not modelled 9.2 18 PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805 71 d2fiqa1 not modelled 9.0 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 72 d2f9zc1 not modelled 8.9 23 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 73 d1fyea_ not modelled 8.7 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 74 c3qfnA_ not modelled 8.7 9 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 75 c3e20C_ not modelled 8.7 11 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 76 c2pr7A_ not modelled 8.6 20 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 77 c1zreB_ not modelled 8.3 15 PDB header:gene regulation/dna Chain: B: PDB Molecule:catabolite gene activator; PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna 78 d1jaea2 not modelled 8.2 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 79 c3qg5D_ not modelled 8.2 14 PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair 80 c3e37B_ not modelled 8.1 14 PDB header:transferase Chain: B: PDB Molecule:protein farnesyltransferase subunit beta; PDBTitle: protein farnesyltransferase complexed with bisubstrate2 ethylenediamine scaffold inhibitor 5 81 d1wpga2 not modelled 8.1 18 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 82 c2zqeA_ not modelled 8.1 20 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 83 c2agaA_ not modelled 8.0 17 PDB header:transcription Chain: A: PDB Molecule:machado-joseph disease protein 1; PDBTitle: de-ubiquitinating function of ataxin-3: insights from the2 solution structure of the josephin domain 84 c3t1iC_ not modelled 8.0 18 PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations 85 d2h6fb1 not modelled 7.9 14 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Protein prenyltransferases 86 d1okga1 not modelled 7.8 8 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 87 c1zgxB_ not modelled 7.7 33 PDB header:hydrolase Chain: B: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant 88 d1jl3a_ not modelled 7.7 11 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 89 d1i5za2 not modelled 7.7 15 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 90 d1d2na_ not modelled 7.6 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 91 d2nxfa1 not modelled 7.5 9 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like 92 c2vzaD_ not modelled 7.5 14 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 93 d2jdig1 not modelled 7.4 33 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 94 c2zbkB_ not modelled 7.4 20 PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms 95 c3j08A_ not modelled 7.4 18 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 96 c2k23A_ not modelled 7.3 12 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 97 c3gd5D_ not modelled 7.3 14 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus 98 d1yp2a2 not modelled 7.3 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 99 c2l3nA_ not modelled 7.3 13 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein rap1, telomere length regulator taz1; PDBTitle: solution structure of rap1-taz1 fusion protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0