Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A7C2
DateThu Jan 5 11:05:19 GMT 2012
Unique Job ID12a393021f853697

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3k2zA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
Confidence and coverage
Confidence:100.0% Coverage: 95%
191 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS
Secondary structure 
















SS confidence 



























































Disorder  ?????





















































?
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   .........70.........80.........90.........100.........110.........120
Sequence  GASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSM
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Disorder  ???
?


?
???








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   .........130.........140.........150.........160.........170.........180
Sequence  KDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVD
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   .........190.........200..
Sequence  LRQQSFTIEGLAVGVIRNGDWL
Secondary structure 







SS confidence 





















Disorder 



















??
Disorder confidence 





















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3k2z chain A

3D model

Region: 3 - 199
Aligned: 191
Modelled: 197
Confidence: 100.0%
Identity: 36%
PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima

Phyre2

PDB 1jhf chain A domain 2

3D model

Region: 76 - 198
Aligned: 123
Modelled: 123
Confidence: 100.0%
Identity: 99%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 1jhh chain B

3D model

Region: 76 - 199
Aligned: 118
Modelled: 124
Confidence: 99.9%
Identity: 99%
PDB header:hydrolase
Chain: B: PDB Molecule:lexa repressor;
PDBTitle: lexa s119a mutant

Phyre2

PDB 3bdn chain B

3D model

Region: 2 - 200
Aligned: 190
Modelled: 199
Confidence: 99.9%
Identity: 24%
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor

Phyre2

PDB 1umu chain A

3D model

Region: 92 - 197
Aligned: 103
Modelled: 106
Confidence: 99.9%
Identity: 32%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 2hnf chain A

3D model

Region: 73 - 195
Aligned: 119
Modelled: 123
Confidence: 99.9%
Identity: 28%
PDB header:viral protein
Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a;
PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region

Phyre2

PDB 2fjr chain B

3D model

Region: 13 - 200
Aligned: 170
Modelled: 188
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186

Phyre2

PDB 1f39 chain A

3D model

Region: 106 - 197
Aligned: 88
Modelled: 92
Confidence: 99.8%
Identity: 32%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 1jhf chain A domain 1

3D model

Region: 2 - 72
Aligned: 71
Modelled: 71
Confidence: 99.5%
Identity: 100%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: LexA repressor, N-terminal DNA-binding domain

Phyre2

PDB 2fkd chain K

3D model

Region: 126 - 198
Aligned: 67
Modelled: 73
Confidence: 98.9%
Identity: 21%
PDB header:transcription regulator
Chain: K: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of the c-terminal domain of bacteriophage2 186 repressor

Phyre2

PDB 1stz chain A domain 1

3D model

Region: 3 - 67
Aligned: 65
Modelled: 65
Confidence: 98.6%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Heat-inducible transcription repressor HrcA, N-terminal domain

Phyre2

PDB 1b12 chain A

3D model

Region: 112 - 174
Aligned: 62
Modelled: 63
Confidence: 97.4%
Identity: 21%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: Type 1 signal peptidase

Phyre2

PDB 3eus chain B

3D model

Region: 5 - 49
Aligned: 42
Modelled: 45
Confidence: 97.3%
Identity: 19%
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi

Phyre2

PDB 2x4h chain A

3D model

Region: 4 - 60
Aligned: 55
Modelled: 57
Confidence: 97.3%
Identity: 20%
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus

Phyre2

PDB 1fx7 chain C

3D model

Region: 1 - 61
Aligned: 59
Modelled: 61
Confidence: 97.2%
Identity: 25%
PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis

Phyre2

PDB 1y9q chain A

3D model

Region: 9 - 138
Aligned: 127
Modelled: 130
Confidence: 97.2%
Identity: 11%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae

Phyre2

PDB 2it0 chain A

3D model

Region: 3 - 61
Aligned: 57
Modelled: 59
Confidence: 97.0%
Identity: 25%
PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii

Phyre2

PDB 1rio chain A

3D model

Region: 2 - 49
Aligned: 45
Modelled: 45
Confidence: 97.0%
Identity: 16%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Phage repressors

Phyre2

PDB 1f5t chain A

3D model

Region: 2 - 61
Aligned: 58
Modelled: 60
Confidence: 97.0%
Identity: 24%
PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence

Phyre2

PDB 3f6w chain E

3D model

Region: 5 - 49
Aligned: 42
Modelled: 45
Confidence: 96.9%
Identity: 36%
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000

Phyre2
1

c3k2zA_
2

d1jhfa2
3

c1jhhB_
4

c3bdnB_
5

d1umua_
6

c2hnfA_
7

c2fjrB_
8

d1f39a_
9

d1jhfa1
10

c2fkdK_
11

d1stza1
12

d1b12a_
13

c3eusB_
14

c2x4hA_
15

c1fx7C_
16

c1y9qA_
17

c2it0A_
18

d1rioa_
19

c1f5tA_
20

c3f6wE_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3k2zA_



100.0 36 PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
2d1jhfa2



100.0 99 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
3c1jhhB_



99.9 99 PDB header:hydrolase
Chain: B: PDB Molecule:lexa repressor;
PDBTitle: lexa s119a mutant
4c3bdnB_



99.9 24 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
5d1umua_



99.9 32 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
6c2hnfA_



99.9 28 PDB header:viral protein
Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a;
PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region
7c2fjrB_



99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
8d1f39a_



99.8 32 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
9d1jhfa1



99.5 100 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
10c2fkdK_



98.9 21 PDB header:transcription regulator
Chain: K: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of the c-terminal domain of bacteriophage2 186 repressor
11d1stza1



98.6 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
12d1b12a_



97.4 21 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:Type 1 signal peptidase
13c3eusB_



97.3 19 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
14c2x4hA_



97.3 20 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
15c1fx7C_



97.2 25 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
16c1y9qA_



97.2 11 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
17c2it0A_



97.0 25 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
18d1rioa_



97.0 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
19c1f5tA_



97.0 24 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
20c3f6wE_



96.9 36 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
21d1llib_



not modelled 96.9 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
22c1stzB_



not modelled 96.8 20 PDB header:transcription
Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
23d1lmb3_



not modelled 96.8 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
24c2vn2B_



not modelled 96.7 25 PDB header:replication
Chain: B: PDB Molecule:chromosome replication initiation protein;
PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426
25c3fmyA_



not modelled 96.6 18 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
26c3op9A_



not modelled 96.6 13 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
27c2bnoA_



not modelled 96.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
28d2ev0a1



not modelled 96.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
29c2ef8A_



not modelled 96.5 14 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
30d2isya1



not modelled 96.5 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
31d2a6ca1



not modelled 96.4 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
32d1g3wa1



not modelled 96.4 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
33c2kpjA_



not modelled 96.4 21 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
34c3cecA_



not modelled 96.4 20 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
35c3ivpD_



not modelled 96.3 13 PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
36c2v79B_



not modelled 96.3 18 PDB header:dna-binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis
37d1y9qa1



not modelled 96.2 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
38d2b5aa1



not modelled 96.2 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
39d2croa_



not modelled 96.1 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
40c3f52A_



not modelled 96.1 21 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
41c3bs3A_



not modelled 96.1 18 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
42c2o38A_



not modelled 96.1 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
43d2o38a1



not modelled 96.1 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
44c2wteB_



not modelled 96.1 12 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
45c2xcjB_



not modelled 96.1 11 PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
46c3b7hA_



not modelled 96.1 14 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
47d1adra_



not modelled 96.0 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
48d2ppxa1



not modelled 96.0 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
49c2ppxA_



not modelled 96.0 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
50d1biaa1



not modelled 96.0 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
51d2icta1



not modelled 95.9 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
52d1sq8a_



not modelled 95.9 31 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
53c3sztB_



not modelled 95.8 25 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
54c3omtA_



not modelled 95.8 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
55c3dnvB_



not modelled 95.8 15 PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
56d1x57a1



not modelled 95.8 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
57d1y7ya1



not modelled 95.8 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
58c2ewtA_



not modelled 95.7 9 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
59c3clcC_



not modelled 95.7 16 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
60c2q0oA_



not modelled 95.7 17 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
61d1r69a_



not modelled 95.7 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
62d1ku9a_



not modelled 95.6 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
63c3gn5B_



not modelled 95.5 21 PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
64c1b0nA_



not modelled 95.5 15 PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
65c3t76A_



not modelled 95.5 11 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
66c1g3wA_



not modelled 95.4 25 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
67d2cfxa1



not modelled 95.4 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
68d2r1jl1



not modelled 95.4 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
69d1b0na2



not modelled 95.4 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
70c2wusR_



not modelled 95.4 10 PDB header:structural protein
Chain: R: PDB Molecule:putative uncharacterized protein;
PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz
71c1zljE_



not modelled 95.3 22 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
72d1l3la1



not modelled 95.3 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
73d2ofya1



not modelled 95.3 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
74c3mlfC_



not modelled 95.3 13 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
75c3qp5C_



not modelled 95.3 25 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
76c2h09A_



not modelled 95.3 33 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
77c3lisB_



not modelled 95.2 11 PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
78c3nqoB_



not modelled 95.2 20 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
79c1h0mD_



not modelled 95.1 18 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
80c2ev5B_



not modelled 95.1 14 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
81d1a04a1



not modelled 95.0 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
82d1aoya_



not modelled 95.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
83c3r0aB_



not modelled 95.0 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
84c3bwgA_



not modelled 95.0 23 PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
85c2l4aA_



not modelled 95.0 28 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
86c2krfB_



not modelled 95.0 24 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
87d2cg4a1



not modelled 94.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
88c2w48D_



not modelled 94.9 23 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
89d1utxa_



not modelled 94.9 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
90c3tgnA_



not modelled 94.9 30 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
91c1vi0B_



not modelled 94.9 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
92d2d1ha1



not modelled 94.9 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
93c3iwfA_



not modelled 94.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
94d1mkma1



not modelled 94.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
95d3broa1



not modelled 94.7 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
96d3bwga1



not modelled 94.7 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
97c3c2bA_



not modelled 94.7 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
98d1p4wa_



not modelled 94.7 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
99c3eetA_



not modelled 94.7 33 PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
100c3edpB_



not modelled 94.6 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262
101c2ebyA_



not modelled 94.6 13 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
102d2hs5a1



not modelled 94.6 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
103c2g3bB_



not modelled 94.6 21 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
104d1fsea_



not modelled 94.6 36 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
105c3g3zA_



not modelled 94.6 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
106d1ku3a_



not modelled 94.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
107c3trbA_



not modelled 94.5 12 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
108c2e1cA_



not modelled 94.5 15 PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
109c3by6C_



not modelled 94.5 21 PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
110d1rp3a1



not modelled 94.5 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
111c2qwwB_



not modelled 94.5 22 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
112c2vbzA_



not modelled 94.4 24 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
113c3neuA_



not modelled 94.4 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
114c3kxaD_



not modelled 94.3 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
115c1u78A_



not modelled 94.3 20 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
116c2du9A_



not modelled 94.2 23 PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
117d1i1ga1



not modelled 94.2 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
118d2p7vb1



not modelled 94.2 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
119d1sfxa_



not modelled 94.2 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
120c2nyxB_



not modelled 94.1 17 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0