Secondary structure and disorder prediction

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Sequence		M	A	R	V	T	L	R	I	T	G	T	Q	L	L	C	Q	D	E	H	P	S	L	L	A	A	L	E	S	H	N	V	A	V	E	Y	Q	C	R	E	G	Y	C	G	S	C	R	T	R	L	V	A	G	Q	V	D	W	I	A	E	P
Secondary structure
SS confidence
Disorder		?	?																																																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Sequence		L	A	F	I	Q	P	G	E	I	L	P	C	C	C	R	A	K	G	D	I	E	I	E	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1iue chain A Region: 1 - 84 Aligned: 83 Modelled: 84 Confidence: 99.9% Identity: 36% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1a70 chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.9% Identity: 30% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1frr chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.9% Identity: 26% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1off chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 30% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 2pia chain A domain 3 Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 30% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1frd chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 23% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1fxi chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 32% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1awd chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 29% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1pfd chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 28% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1krh chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase Phyre2 PDB 1czp chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 29% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 4fxc chain A Region: 1 - 84 Aligned: 83 Modelled: 84 Confidence: 99.8% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 2pia chain A Region: 3 - 84 Aligned: 81 Modelled: 82 Confidence: 99.8% Identity: 31% PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] Phyre2 PDB 1gaq chain B Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 30% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1jq4 chain A Region: 1 - 84 Aligned: 83 Modelled: 84 Confidence: 99.8% Identity: 28% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 2cjo chain A Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1wri chain A Region: 2 - 84 Aligned: 81 Modelled: 83 Confidence: 99.8% Identity: 25% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1krh chain A domain 3 Region: 2 - 84 Aligned: 82 Modelled: 83 Confidence: 99.8% Identity: 28% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1doi chain A Region: 9 - 83 Aligned: 74 Modelled: 75 Confidence: 99.8% Identity: 20% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 3ah7 chain A Region: 1 - 84 Aligned: 83 Modelled: 84 Confidence: 99.7% Identity: 19% PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 Phyre2 1 d1iuea_ 2 d1a70a_ 3 d1frra_ 4 d1offa_ 5 d2piaa3 6 d1frda_ 7 d1fxia_ 8 d1awda_ 9 d1pfda_ 10 c1krhA_ 11 d1czpa_ 12 d4fxca_ 13 c2piaA_ 14 d1gaqb_ 15 d1jq4a_ 16 d2cjoa_ 17 d1wria_ 18 d1krha3 19 d1doia_ 20 c3ah7A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1iuea_ 99.9 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 2 d1a70a_ 99.9 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 3 d1frra_ 99.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 4 d1offa_ 99.8 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 5 d2piaa3 99.8 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 6 d1frda_ 99.8 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 7 d1fxia_ 99.8 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 8 d1awda_ 99.8 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 9 d1pfda_ 99.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 10 c1krhA_ 99.8 28 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 11 d1czpa_ 99.8 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 12 d4fxca_ 99.8 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 13 c2piaA_ 99.8 31 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 14 d1gaqb_ 99.8 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 15 d1jq4a_ 99.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 16 d2cjoa_ 99.8 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 17 d1wria_ 99.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 18 d1krha3 99.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 19 d1doia_ 99.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 20 c3ah7A_ 99.7 19 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 21 d1i7ha_ not modelled 99.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 22 d1e0za_ not modelled 99.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 23 d1l5pa_ not modelled 99.6 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 24 c2wlbB_ not modelled 99.5 20 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 25 c3huiA_ not modelled 99.5 17 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris 26 d1xlqa1 not modelled 99.4 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 27 d1e9ma_ not modelled 99.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 28 c3lxfC_ not modelled 99.4 19 PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans 29 d1b9ra_ not modelled 99.4 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 30 d2bt6a1 not modelled 99.3 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 31 d2fug33 not modelled 98.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 32 c1l6vA_ not modelled 98.9 12 PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin 33 d3c8ya2 not modelled 98.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 34 c1c4cA_ not modelled 98.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 35 c2fugC_ not modelled 98.4 22 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 36 d1vlba2 not modelled 98.2 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 37 d1t3qa2 not modelled 98.1 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 38 d1dgja2 not modelled 98.1 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 39 d1n62a2 not modelled 97.9 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 40 d1ffva2 not modelled 97.9 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 41 c1t3qD_ not modelled 97.8 24 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 42 c3hrdH_ not modelled 97.8 27 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 43 d1rm6c2 not modelled 97.7 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 44 c1n60D_ not modelled 97.6 21 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 45 c1rm6F_ not modelled 97.6 21 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 46 c1ffuA_ not modelled 97.5 19 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 47 d1jroa2 not modelled 97.4 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 48 c1vlbA_ not modelled 97.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 49 c2h89B_ not modelled 97.4 27 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 50 d2bs2b2 not modelled 97.2 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 51 d1v97a2 not modelled 97.2 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 52 c3b9jI_ not modelled 97.1 28 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 53 c3eubJ_ not modelled 97.0 28 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 54 d1kf6b2 not modelled 97.0 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 55 c2w3rG_ not modelled 96.9 24 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 56 c2bs2E_ not modelled 96.8 21 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 57 d1nekb2 not modelled 96.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 58 c1dgjA_ not modelled 96.7 27 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 59 c2b76N_ not modelled 96.6 25 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 60 c1nekB_ not modelled 96.5 28 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 61 c1wygA_ not modelled 95.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 62 c1ep3B_ not modelled 94.7 15 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 63 d1ep3b2 not modelled 92.7 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 64 c1x31A_ not modelled 91.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 65 c1y56A_ not modelled 79.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii 66 d1tkea1 not modelled 32.3 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 67 d2vv5a2 not modelled 26.4 7 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 68 c2yx5A_ not modelled 15.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 69 c3hvzB_ not modelled 15.8 4 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 70 c2kmmA_ not modelled 15.4 15 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 71 c1feoA_ not modelled 14.1 63 PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin mviia-gly; PDBTitle: solution structure of omega-conotoxin mviia with c-terminal2 gly 72 d1xn7a_ not modelled 12.9 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 73 d1rutx4 not modelled 12.8 54 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 74 d1zud21 not modelled 9.0 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 75 c1tygG_ not modelled 8.9 13 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 76 d1e0ga_ not modelled 8.4 17 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 77 c2ixsB_ not modelled 8.3 15 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 78 c3fwaA_ not modelled 7.3 11 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 79 c2kl0A_ not modelled 7.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 80 c1tkeA_ not modelled 6.9 23 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine 81 c3bl5E_ not modelled 6.7 21 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 82 d1emoa2 not modelled 5.9 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 83 d1wt8a1 not modelled 5.9 36 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 84 d1vq3a_ not modelled 5.8 8 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 85 c3d2hA_ not modelled 5.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form 86 d1tygb_ not modelled 5.7 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 87 c2i5yS_ not modelled 5.4 38 PDB header:virus/viral protein/immune system Chain: S: PDB Molecule:cd4m47, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m47, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 88 c2i5yM_ not modelled 5.4 38 PDB header:virus/viral protein/immune system Chain: M: PDB Molecule:cd4m47, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m47, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 89 c2vv5D_ not modelled 5.2 7 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0