Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77808
DateThu Jan 5 12:33:01 GMT 2012
Unique Job ID0f9c5d0a363d7e84

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3kbqA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
Confidence and coverage
Confidence:100.0% Coverage: 40%
162 residues ( 40% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
294 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDDLVTILRERSQH
Secondary structure 










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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  ADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMERYFHERGRVMAPSNRKQAE
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?









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   .........130.........140.........150.........160.........170.........180
Sequence  LPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPPV
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   .........190.........200.........210.........220.........230.........240
Sequence  CLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPIIELKLTGPASEQQAMEKLWLDVK
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   .........250.........260.........270.........280.........290.........300
Sequence  RVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQFTGGLLALQLSRAGAPLLACEVVPS
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?















































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   .........310.........320.........330.........340.........350.........360
Sequence  QEETLAQTAHWITERRANHFAGLALAVSGFENEHLNFALATPDGTFALRVRFSTTRYSLA
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?




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   .........370.........380.........390.........400
Sequence  IRQEVCAMMALNMLRRWLNGQDIASEHGWIEVVESMTLSV
Secondary structure 













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Disorder 


















???????







??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3kbq chain A

3D model

Region: 3 - 169
Aligned: 162
Modelled: 167
Confidence: 100.0%
Identity: 31%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum

Phyre2

PDB 1mkz chain A

3D model

Region: 2 - 177
Aligned: 151
Modelled: 153
Confidence: 100.0%
Identity: 20%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2pjk chain A

3D model

Region: 2 - 173
Aligned: 151
Modelled: 151
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii

Phyre2

PDB 2fts chain A domain 3

3D model

Region: 3 - 178
Aligned: 146
Modelled: 146
Confidence: 100.0%
Identity: 28%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 2is8 chain A

3D model

Region: 1 - 171
Aligned: 146
Modelled: 154
Confidence: 100.0%
Identity: 22%
PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8

Phyre2

PDB 1y5e chain A domain 1

3D model

Region: 2 - 173
Aligned: 148
Modelled: 154
Confidence: 100.0%
Identity: 18%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2a9s chain A domain 1

3D model

Region: 246 - 380
Aligned: 132
Modelled: 135
Confidence: 100.0%
Identity: 20%
Fold: Anticodon-binding domain-like
Superfamily: CinA-like
Family: CinA-like

Phyre2

PDB 2nqr chain A domain 3

3D model

Region: 2 - 178
Aligned: 141
Modelled: 143
Confidence: 100.0%
Identity: 23%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 3rfq chain C

3D model

Region: 3 - 174
Aligned: 147
Modelled: 159
Confidence: 100.0%
Identity: 15%
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum

Phyre2

PDB 1uuy chain A

3D model

Region: 2 - 171
Aligned: 145
Modelled: 146
Confidence: 100.0%
Identity: 22%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 1jlj chain A

3D model

Region: 2 - 171
Aligned: 145
Modelled: 146
Confidence: 99.9%
Identity: 17%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2g4r chain B

3D model

Region: 3 - 171
Aligned: 144
Modelled: 152
Confidence: 99.9%
Identity: 16%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga

Phyre2

PDB 2f7w chain A domain 1

3D model

Region: 2 - 171
Aligned: 145
Modelled: 146
Confidence: 99.9%
Identity: 17%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2g2c chain A domain 1

3D model

Region: 2 - 173
Aligned: 144
Modelled: 145
Confidence: 99.9%
Identity: 16%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2nqq chain A

3D model

Region: 2 - 177
Aligned: 140
Modelled: 142
Confidence: 99.9%
Identity: 24%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q

Phyre2

PDB 2fu3 chain A

3D model

Region: 2 - 178
Aligned: 143
Modelled: 143
Confidence: 99.9%
Identity: 30%
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain

Phyre2

PDB 1uz5 chain A domain 3

3D model

Region: 3 - 177
Aligned: 134
Modelled: 150
Confidence: 99.9%
Identity: 25%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 1uz5 chain A

3D model

Region: 1 - 186
Aligned: 145
Modelled: 152
Confidence: 99.9%
Identity: 25%
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii

Phyre2

PDB 1di6 chain A

3D model

Region: 2 - 162
Aligned: 127
Modelled: 134
Confidence: 99.9%
Identity: 20%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 1wu2 chain A domain 3

3D model

Region: 2 - 177
Aligned: 124
Modelled: 124
Confidence: 99.9%
Identity: 17%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
1

c3kbqA_
2

d1mkza_
3

c2pjkA_
4

d2ftsa3
5

c2is8A_
6

d1y5ea1
7

d2a9sa1
8

d2nqra3
9

c3rfqC_
10

d1uuya_
11

d1jlja_
12

c2g4rB_
13

d2f7wa1
14

d2g2ca1
15

c2nqqA_
16

c2fu3A_
17

d1uz5a3
18

c1uz5A_
19

d1di6a_
20

d1wu2a3
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kbqA_



100.0 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
2d1mkza_



100.0 20 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
3c2pjkA_



100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
4d2ftsa3



100.0 28 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
5c2is8A_



100.0 22 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
6d1y5ea1



100.0 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
7d2a9sa1



100.0 20 Fold:Anticodon-binding domain-like
Superfamily:CinA-like
Family:CinA-like
8d2nqra3



100.0 23 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
9c3rfqC_



100.0 15 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
10d1uuya_



100.0 22 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
11d1jlja_



99.9 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
12c2g4rB_



99.9 16 PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
13d2f7wa1



99.9 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
14d2g2ca1



99.9 16 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
15c2nqqA_



99.9 24 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
16c2fu3A_



99.9 30 PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain
17d1uz5a3



99.9 25 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
18c1uz5A_



99.9 25 PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
19d1di6a_



99.9 20 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
20d1wu2a3



99.9 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
21c1wu2B_



not modelled 99.8 18 PDB header:structural genomics,biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein;
PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3
22d1xi8a3



not modelled 99.7 20 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
23d1wl8a1



not modelled 93.9 8 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
24d1l7da1



not modelled 93.7 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
25d2nv0a1



not modelled 92.0 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
26d2a9va1



not modelled 91.4 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
27d1pjca1



not modelled 90.2 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
28c3l3bA_



not modelled 89.5 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
29d1ka9h_



not modelled 89.0 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
30c3p2yA_



not modelled 88.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alanine dehydrogenase/pyridine nucleotide transhydrogenase;
PDBTitle: crystal structure of alanine dehydrogenase/pyridine nucleotide2 transhydrogenase from mycobacterium smegmatis
31c3dojA_



not modelled 87.6 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase-like protein;
PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1)
32c2rirA_



not modelled 86.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase, a chain;
PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis
33c1z0zC_



not modelled 85.4 17 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
34d1gpma2



not modelled 85.4 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
35d1z0sa1



not modelled 84.9 17 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
36c2issF_



not modelled 84.3 22 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
37d1n1ea2



not modelled 83.6 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
38d1k9vf_



not modelled 82.7 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
39c3c1nA_



not modelled 82.5 15 PDB header:transferase
Chain: A: PDB Molecule:probable aspartokinase;
PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine
40d1vhqa_



not modelled 81.8 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
41c3s40C_



not modelled 81.1 18 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
42c2f1kD_



not modelled 80.4 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
43d1i36a2



not modelled 78.9 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
44c3ckyA_



not modelled 78.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase;
PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation
45c3d4oA_



not modelled 76.4 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit a;
PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
46c3en0A_



not modelled 75.6 10 PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
47d2cdqa1



not modelled 74.9 20 Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
48c2v6bB_



not modelled 74.6 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form)
49d1qdlb_



not modelled 74.4 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
50c3k94A_



not modelled 74.3 14 PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2
51c2qhpA_



not modelled 72.5 19 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution
52c2ywjA_



not modelled 72.4 26 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
53d2hmfa1



not modelled 70.9 15 Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
54c3plnA_



not modelled 70.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose
55c1a5zA_



not modelled 70.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh)
56d1vcoa1



not modelled 69.3 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
57c1l7eC_



not modelled 68.7 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase,
PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh
58c2v4uA_



not modelled 68.2 16 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
59d1q7ra_



not modelled 67.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
60c3c7cB_



not modelled 67.7 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:octopine dehydrogenase;
PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
61c1np3B_



not modelled 67.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
62d2naca2



not modelled 66.9 23 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
63c3l4eA_



not modelled 66.7 25 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
64d1jvna2



not modelled 65.9 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
65d1i7qb_



not modelled 65.8 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
66d1v19a_



not modelled 63.7 19 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
67d1fmfa_



not modelled 63.6 19 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
68d1u7za_



not modelled 62.5 12 Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
69d1jaya_



not modelled 62.4 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
70c1i36A_



not modelled 61.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein mth1747;
PDBTitle: structure of conserved protein mth1747 of unknown function2 reveals structural similarity with 3-hydroxyacid3 dehydrogenases
71c3qfnA_



not modelled 61.7 37 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate
72c3kklA_



not modelled 61.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
73d1ccwa_



not modelled 61.3 14 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
74c2cukC_



not modelled 60.8 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:glycerate dehydrogenase/glyoxylate reductase;
PDBTitle: crystal structure of tt0316 protein from thermus thermophilus hb8
75c2z04A_



not modelled 60.7 13 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase atpase subunit from aquifex aeolicus
76d1a9xb2



not modelled 60.0 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
77d3bula2



not modelled 59.4 14 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
78c3cq9C_



not modelled 59.0 16 PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein lp_1622;
PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114
79d1mv8a2



not modelled 59.0 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
80c2e85B_



not modelled 58.9 17 PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
81c1mv8A_



not modelled 58.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase;
PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa
82c3iq0B_



not modelled 58.4 17 PDB header:transferase
Chain: B: PDB Molecule:putative ribokinase ii;
PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli
83c3l76B_



not modelled 57.7 21 PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of aspartate kinase from synechocystis
84d1i1qb_



not modelled 56.7 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
85c1ta9A_



not modelled 56.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
86c1su1A_



not modelled 55.5 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yfce;
PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli
87d1su1a_



not modelled 55.5 31 Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:YfcE-like
88d1s1ma1



not modelled 55.4 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
89c3l6dB_



not modelled 55.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
90d1fyea_



not modelled 55.3 29 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
91c3ghyA_



not modelled 54.5 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:ketopantoate reductase protein;
PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2
92d1a5za1



not modelled 54.3 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
93c2gk4A_



not modelled 54.3 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: the crystal structure of the dna/pantothenate metabolism flavoprotein2 from streptococcus pneumoniae
94c1rcuB_



not modelled 53.2 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein vt76;
PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76
95c3ihkC_



not modelled 52.6 19 PDB header:transferase
Chain: C: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83
96c2y0dB_



not modelled 52.4 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose dehydrogenase;
PDBTitle: bcec mutation y10k
97c3lkiA_



not modelled 52.1 18 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa
98d1civa1



not modelled 51.3 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
99c3pu6A_



not modelled 50.8 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes
100d1o1ya_



not modelled 50.2 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
101c2an1D_



not modelled 49.8 27 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
102d9ldta1



not modelled 49.6 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
103c2dc1A_



not modelled 49.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
104c1y80A_



not modelled 49.4 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica
105c1ks9A_



not modelled 49.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
106d1tyya_



not modelled 49.0 13 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
107d1qf6a1



not modelled 48.7 18 Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
108c2q3eH_



not modelled 48.5 13 PDB header:oxidoreductase
Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose
109c2yxbA_



not modelled 48.5 19 PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
110c2gf2B_



not modelled 47.7 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of human hydroxyisobutyrate dehydrogenase
111d1rcua_



not modelled 46.9 15 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
112d1e8ca2



not modelled 46.0 11 Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
113c2pkkA_



not modelled 45.8 17 PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine
114c3cumA_



not modelled 45.8 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
115c3etjB_



not modelled 44.9 10 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi
116c3prjB_



not modelled 44.8 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
117c2uyyD_



not modelled 44.8 16 PDB header:cytokine
Chain: D: PDB Molecule:n-pac protein;
PDBTitle: structure of the cytokine-like nuclear factor n-pac
118c1m67A_



not modelled 44.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine
119d1txga2



not modelled 44.4 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
120c1ibjC_



not modelled 43.7 16 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0