Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	T	Q	R	K	E	I	E	N	V	T	N	I	T	G	V	R	Q	I	E	L	W	R	R	D	D	L	Q	H	P	R	L	D	E	V	A	E	E	V	P	V	A	L	V	Y	N	G	I	S	H	V	V	M	M	A	S	P	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	L	E	Y	F	A	L	G	F	S	L	S	E	G	I	I	E	S	P	R	D	I	F	G	M	D	V	V	P	S	C	N	G	L	E	V	Q	I	E	L	S	S	R	R	F	M	G	L	K	E	R	R	R	A	L	A	G	R	T	G
Secondary structure
SS confidence
Disorder																																														?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		C	G	V	C	G	V	E	Q	L	N	D	I	G	K	P	V	Q	P	L	P	F	T	Q	T	F	D	L	N	K	L	D	D	A	L	R	H	L	N	D	F	Q	P	V	G	Q	L	T	G	C	T	H	A	A	A	W	M	L	P	S	G
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	L	V	G	G	H	E	D	V	G	R	H	V	A	L	D	K	L	L	G	R	R	S	Q	E	G	E	S	W	Q	Q	G	A	V	L	V	S	S	R	A	S	Y	E	M	V	Q	K	S	A	M	C	G	V	E	I	L	F	A	V	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Sequence		A	A	T	T	L	A	V	E	V	A	E	R	C	N	L	T	L	V	G	F	C	K	P	G	R	A	T	V	Y	T	H	P	Q	R	L	S	N
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pw9 chain A domain 1 Region: 14 - 276 Aligned: 231 Modelled: 234 Confidence: 100.0% Identity: 28% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: FdhD/NarQ Phyre2 PDB 2nu7 chain A domain 1 Region: 201 - 259 Aligned: 59 Modelled: 59 Confidence: 91.4% Identity: 12% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 1oi7 chain A domain 1 Region: 203 - 259 Aligned: 57 Modelled: 57 Confidence: 88.0% Identity: 16% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 3evn chain A Region: 158 - 258 Aligned: 96 Modelled: 101 Confidence: 70.7% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r Phyre2 PDB 1y88 chain A Region: 234 - 259 Aligned: 26 Modelled: 26 Confidence: 68.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 Phyre2 PDB 3dty chain A Region: 195 - 258 Aligned: 64 Modelled: 64 Confidence: 67.3% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae Phyre2 PDB 2duw chain A Region: 213 - 259 Aligned: 47 Modelled: 47 Confidence: 66.6% Identity: 19% PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae Phyre2 PDB 1iuk chain A Region: 223 - 259 Aligned: 37 Modelled: 37 Confidence: 65.9% Identity: 3% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 1y88 chain A domain 2 Region: 234 - 265 Aligned: 32 Modelled: 32 Confidence: 63.5% Identity: 19% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: MRR-like Phyre2 PDB 1gvf chain A Region: 221 - 273 Aligned: 50 Modelled: 52 Confidence: 63.4% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class II FBP aldolase Phyre2 PDB 2d59 chain A domain 1 Region: 205 - 259 Aligned: 53 Modelled: 55 Confidence: 63.2% Identity: 17% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 3ff4 chain A Region: 204 - 259 Aligned: 54 Modelled: 56 Confidence: 63.0% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 Phyre2 PDB 3euw chain B Region: 203 - 260 Aligned: 58 Modelled: 56 Confidence: 61.6% Identity: 9% PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 Phyre2 PDB 1y81 chain A domain 1 Region: 205 - 259 Aligned: 53 Modelled: 55 Confidence: 61.6% Identity: 9% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 2csu chain A domain 1 Region: 205 - 259 Aligned: 53 Modelled: 55 Confidence: 58.8% Identity: 15% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 3f4l chain F Region: 203 - 258 Aligned: 56 Modelled: 56 Confidence: 53.8% Identity: 20% PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 Phyre2 PDB 1g8m chain A domain 2 Region: 191 - 258 Aligned: 68 Modelled: 68 Confidence: 53.7% Identity: 26% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC Phyre2 PDB 1j5p chain A domain 4 Region: 222 - 258 Aligned: 37 Modelled: 37 Confidence: 49.9% Identity: 8% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 3e82 chain A Region: 203 - 258 Aligned: 56 Modelled: 56 Confidence: 48.7% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae Phyre2 PDB 2o48 chain X Region: 203 - 258 Aligned: 56 Modelled: 56 Confidence: 48.5% Identity: 16% PDB header:oxidoreductase Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase; PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase Phyre2 1 d2pw9a1 2 d2nu7a1 3 d1oi7a1 4 c3evnA_ 5 c1y88A_ 6 c3dtyA_ 7 c2duwA_ 8 d1iuka_ 9 d1y88a2 10 d1gvfa_ 11 d2d59a1 12 c3ff4A_ 13 c3euwB_ 14 d1y81a1 15 d2csua1 16 c3f4lF_ 17 d1g8ma2 18 d1j5pa4 19 c3e82A_ 20 c2o48X_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2pw9a1 100.0 28 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ 2 d2nu7a1 91.4 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 3 d1oi7a1 88.0 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 4 c3evnA_ 70.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r 5 c1y88A_ 68.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 6 c3dtyA_ 67.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 7 c2duwA_ 66.6 19 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 8 d1iuka_ 65.9 3 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 9 d1y88a2 63.5 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:MRR-like 10 d1gvfa_ 63.4 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 11 d2d59a1 63.2 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 12 c3ff4A_ 63.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 13 c3euwB_ 61.6 9 PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 14 d1y81a1 61.6 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 15 d2csua1 58.8 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 16 c3f4lF_ 53.8 20 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 17 d1g8ma2 53.7 26 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 18 d1j5pa4 49.9 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 19 c3e82A_ 48.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae 20 c2o48X_ 48.5 16 PDB header:oxidoreductase Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase; PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase 21 c2glxD_ not modelled 47.3 20 PDB header:oxidoreductase Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase; PDBTitle: crystal structure analysis of bacterial 1,5-af reductase 22 c2v4iA_ not modelled 46.7 17 PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2 23 d1h6da1 not modelled 46.3 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 24 d1q3qa2 not modelled 45.0 22 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 25 d2zdra2 not modelled 44.4 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 26 c3mwdB_ not modelled 43.3 11 PDB header:transferase Chain: B: PDB Molecule:atp-citrate synthase; PDBTitle: truncated human atp-citrate lyase with citrate bound 27 d1assa_ not modelled 43.1 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 28 d1kzyc2 not modelled 43.0 4 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 29 c1y4hA_ not modelled 42.3 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:cysteine protease; PDBTitle: wild type staphopain-staphostatin complex 30 d2nvwa1 not modelled 41.8 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 31 d1euca1 not modelled 41.6 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 32 d1gmla_ not modelled 41.0 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 33 c3ec7C_ not modelled 40.8 13 PDB header:oxidoreductase Chain: C: PDB Molecule:putative dehydrogenase; PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2 34 c3e18A_ not modelled 40.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua 35 d1vlia2 not modelled 40.5 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 36 c3g8rA_ not modelled 40.4 7 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 37 c3oqbF_ not modelled 40.2 12 PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 38 c3nt5B_ not modelled 39.4 21 PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose 39 c1xuzA_ not modelled 39.1 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 40 d2ioja1 not modelled 38.8 15 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 41 d1mxsa_ not modelled 38.6 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 42 c3ip3D_ not modelled 38.4 15 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima 43 c2iswB_ not modelled 37.9 23 PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate 44 c2hmcA_ not modelled 37.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens 45 c3q2kB_ not modelled 37.7 12 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca 46 c2ixaA_ not modelled 37.6 16 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 47 c3e9mC_ not modelled 37.5 14 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis 48 c1oi7A_ not modelled 37.2 16 PDB header:synthetase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus 49 c3aq1B_ not modelled 36.9 23 PDB header:chaperone Chain: B: PDB Molecule:thermosome subunit; PDBTitle: open state monomer of a group ii chaperonin from methanococcoides2 burtonii 50 c2fpgA_ not modelled 36.4 13 PDB header:ligase Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain, PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp 51 d1lc0a1 not modelled 36.2 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 52 c3gfgB_ not modelled 36.1 14 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 53 c1evjC_ not modelled 35.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d 54 c3oa2B_ not modelled 35.4 11 PDB header:oxidoreductase Chain: B: PDB Molecule:wbpb; PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution 55 d1vz6a_ not modelled 35.2 17 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:ArgJ-like 56 c1zh8B_ not modelled 34.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution 57 d1e0ta2 not modelled 34.4 19 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 58 c3c1aB_ not modelled 34.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution 59 d1cv8a_ not modelled 33.3 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 60 c3dmyA_ not modelled 33.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli 61 c3ceaA_ not modelled 33.0 8 PDB header:oxidoreductase Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase; PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution 62 c3p9ee_ not modelled 32.8 14 PDB header:chaperone Chain: E: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 63 d1a6db2 not modelled 32.3 22 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 64 d1ryda1 not modelled 32.2 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 65 c1m0sA_ not modelled 31.8 10 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 66 c3fd8A_ not modelled 31.4 9 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis 67 c2yw3E_ not modelled 31.0 31 PDB header:lyase Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1 68 c3v5nA_ not modelled 30.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti 69 d1ydwa1 not modelled 29.4 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 70 c2q4eB_ not modelled 28.8 20 PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 71 d2a6na1 not modelled 28.4 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 72 c3oa0B_ not modelled 28.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:lipopolysaccaride biosynthesis protein wbpb; PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from thermus2 thermophilus in complex with nad and udp-glcnaca 73 c1xeaD_ not modelled 28.3 16 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae 74 c3lciA_ not modelled 27.8 19 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 75 c3fhlC_ not modelled 27.8 16 PDB header:oxidoreductase Chain: C: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343 76 c1lc3A_ not modelled 27.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:biliverdin reductase a; PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex 77 c3n2xB_ not modelled 27.5 10 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 78 c3gdfA_ not modelled 27.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase; PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum. 79 c2nu8D_ not modelled 27.0 6 PDB header:ligase Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase 80 d1pkxa2 not modelled 27.0 20 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 81 c3rbvA_ not modelled 26.9 20 PDB header:sugar binding protein Chain: A: PDB Molecule:sugar 3-ketoreductase; PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp 82 c3moiA_ not modelled 26.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50 83 c3kuxA_ not modelled 26.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis 84 c3sz8D_ not modelled 26.0 15 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 85 c2csuB_ not modelled 26.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 86 d1wzca1 not modelled 25.9 11 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 87 c1j3wB_ not modelled 25.8 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:giding protein-mglb; PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8 88 c2okkA_ not modelled 25.0 17 PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) 89 d1wpga2 not modelled 24.6 12 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 90 c3ezyB_ not modelled 24.6 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima 91 d1j5ya2 not modelled 24.5 15 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 92 d1ebfa1 not modelled 24.4 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 93 c1vliA_ not modelled 24.3 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 94 d1j4aa2 not modelled 23.9 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 95 c1ezaA_ not modelled 23.4 10 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 96 d1nmpa_ not modelled 23.0 13 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 97 d1zcza2 not modelled 22.8 17 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 98 d1nvmb1 not modelled 22.5 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 99 d1hl2a_ not modelled 22.3 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 100 d1f74a_ not modelled 22.2 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 101 c3fkkA_ not modelled 21.9 13 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 102 c3bt3B_ not modelled 21.9 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type; PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans 103 c2v9dB_ not modelled 21.5 9 PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 104 c3d0cB_ not modelled 21.1 9 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution 105 c2v82A_ not modelled 20.6 13 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal 106 c3pueA_ not modelled 20.5 19 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0