Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP62517
DateThu Jan 5 12:07:33 GMT 2012
Unique Job ID0f6459174bbf11ce

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2z86D_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
Confidence and coverage
Confidence: 99.7% Coverage: 27%
226 residues ( 27% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWAREDDSPQGSVKARLEQAWP
Secondary structure 
SS confidence 
Disorder  ???
????????????
???
????
?????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRFWDRLRGRDVTPRYLARLT
Secondary structure 
SS confidence 
Disorder 
???????????????????????????
?
??????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  KEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTILPYQGWALINPMDMVGQDLWV
Secondary structure 
SS confidence 
Disorder  ?????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNP
Secondary structure 
SS confidence 
Disorder 
?
?
??????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EHRTALIMPICNEDVNRVFAGLRATWESVKATGNAKHFDVYILSDSYNPDICVAEQKAWM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  ELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRRWGSQYSYMVVLDADSVMTGDCLCGLV
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RLMEANPNAGIIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  IRVKPFIEHCALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LDELKRDRRWCHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  HALTEPQYFLQPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGF
Secondary structure 
SS confidence 
Disorder 
??
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  WRVTLSLLLEVLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHG
Secondary structure 
SS confidence 
Disorder 
??
????????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  SQLLLGLVWAVGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPE
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  EYSPPQVLVDTDRFLEMNRQRSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDR
Secondary structure 
SS confidence 
Disorder 
?????????
???????????
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  HVEQALNETPEKLNRDRRLVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALR
Secondary structure 
SS confidence 
Disorder 
?
?
??
???
Disorder confidence 
 
   .......
Sequence  KPDAASQ
Secondary structure 
SS confidence 
Disorder  ???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2z86 chain D

3D model

Region: 237 - 487
Aligned: 226
Modelled: 251
Confidence: 99.7%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp

Phyre2

PDB 3f1y chain C

3D model

Region: 241 - 499
Aligned: 225
Modelled: 255
Confidence: 99.7%
Identity: 13%
PDB header:transferase
Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus

Phyre2

PDB 1xhb chain A

3D model

Region: 238 - 468
Aligned: 209
Modelled: 231
Confidence: 99.6%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1

Phyre2

PDB 2ffu chain A

3D model

Region: 242 - 467
Aligned: 199
Modelled: 217
Confidence: 99.6%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2

Phyre2

PDB 3ckv chain A

3D model

Region: 242 - 498
Aligned: 221
Modelled: 257
Confidence: 99.6%
Identity: 13%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein

Phyre2

PDB 2d7i chain A

3D model

Region: 242 - 467
Aligned: 197
Modelled: 226
Confidence: 99.6%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+

Phyre2

PDB 1xhb chain A domain 2

3D model

Region: 242 - 498
Aligned: 235
Modelled: 257
Confidence: 99.5%
Identity: 14%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain

Phyre2

PDB 3bcv chain A

3D model

Region: 242 - 467
Aligned: 194
Modelled: 222
Confidence: 99.5%
Identity: 8%
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis

Phyre2

PDB 1qg8 chain A

3D model

Region: 242 - 493
Aligned: 223
Modelled: 252
Confidence: 99.4%
Identity: 13%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Spore coat polysaccharide biosynthesis protein SpsA

Phyre2

PDB 1omx chain B

3D model

Region: 242 - 372
Aligned: 113
Modelled: 131
Confidence: 99.1%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)

Phyre2

PDB 1omz chain A

3D model

Region: 242 - 371
Aligned: 112
Modelled: 130
Confidence: 99.1%
Identity: 16%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Exostosin

Phyre2

PDB 2qgi chain A

3D model

Region: 231 - 493
Aligned: 215
Modelled: 232
Confidence: 98.4%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:atp synthase subunits region orf 6;
PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus

Phyre2

PDB 2bo4 chain A domain 1

3D model

Region: 246 - 445
Aligned: 185
Modelled: 200
Confidence: 98.2%
Identity: 14%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: MGS-like

Phyre2

PDB 1fo8 chain A

3D model

Region: 244 - 374
Aligned: 117
Modelled: 131
Confidence: 96.8%
Identity: 17%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: N-acetylglucosaminyltransferase I

Phyre2

PDB 2wvm chain A

3D model

Region: 242 - 354
Aligned: 93
Modelled: 113
Confidence: 96.3%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)

Phyre2

PDB 2zu8 chain A

3D model

Region: 242 - 354
Aligned: 94
Modelled: 113
Confidence: 95.7%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii

Phyre2

PDB 1pzt chain A

3D model

Region: 240 - 473
Aligned: 165
Modelled: 175
Confidence: 95.7%
Identity: 18%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: beta 1,4 galactosyltransferase (b4GalT1)

Phyre2

PDB 1ga8 chain A

3D model

Region: 259 - 372
Aligned: 109
Modelled: 114
Confidence: 89.1%
Identity: 17%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Galactosyltransferase LgtC

Phyre2

PDB 1ga8 chain A

3D model

Region: 259 - 372
Aligned: 109
Modelled: 114
Confidence: 89.1%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.

Phyre2

PDB 3tzt chain B

3D model

Region: 242 - 354
Aligned: 99
Modelled: 112
Confidence: 83.4%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.

Phyre2
1
c2z86D_
2
c3f1yC_
3
c1xhbA_
4
c2ffuA_
5
c3ckvA_
6
c2d7iA_
7
d1xhba2
8
c3bcvA_
9
d1qg8a_
10
c1omxB_
11
d1omza_
12
c2qgiA_
13
d2bo4a1
14
d1fo8a_
15
c2wvmA_
16
c2zu8A_
17
d1pzta_
18
d1ga8a_
19
c1ga8A_
20
c3tztB_
21
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23
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25
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2z86D_
99.7 19 PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
2c3f1yC_
99.7 13 PDB header:transferase
Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus
3c1xhbA_
99.6 13 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1
4c2ffuA_
99.6 16 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2
5c3ckvA_
99.6 13 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein
6c2d7iA_
99.6 14 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+
7d1xhba2
99.5 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
8c3bcvA_
99.5 8 PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis
9d1qg8a_
99.4 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Spore coat polysaccharide biosynthesis protein SpsA
10c1omxB_
99.1 16 PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)
11d1omza_
99.1 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Exostosin
12c2qgiA_
98.4 13 PDB header:transferase
Chain: A: PDB Molecule:atp synthase subunits region orf 6;
PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus
13d2bo4a1
98.2 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:MGS-like
14d1fo8a_
96.8 17 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:N-acetylglucosaminyltransferase I
15c2wvmA_
96.3 24 PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)
16c2zu8A_
95.7 23 PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii
17d1pzta_
95.7 18 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:beta 1,4 galactosyltransferase (b4GalT1)
18d1ga8a_
89.1 17 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Galactosyltransferase LgtC
19c1ga8A_
89.1 17 PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.
20c3tztB_
83.4 15 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.
21d1vh3a_
not modelled 76.5 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
22c3ednB_
not modelled 70.4 24 PDB header:biosynthetic protein
Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family;
PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family
23c1u0kA_
not modelled 67.7 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:gene product pa4716;
PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa
24c3lw6A_
not modelled 65.0 17 PDB header:transferase
Chain: A: PDB Molecule:beta-4-galactosyltransferase 7;
PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7
25d1eyra_
not modelled 58.4 19 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
26d1i52a_
not modelled 57.0 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
27d1ll2a_
not modelled 55.5 15 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycogenin
28d1qy9a1
not modelled 54.9 21 Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
29d1w77a1
not modelled 54.1 8 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
30d1vgwa_
not modelled 52.8 13 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
31c1u1wA_
not modelled 52.4 19 PDB header:isomerase, lyase
Chain: A: PDB Molecule:phenazine biosynthesis protein phzf;
PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79
32c1zcyA_
not modelled 52.1 15 PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser
33d1s7ja_
not modelled 49.5 14 Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
34c1qy9B_
not modelled 45.2 21 PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ydde;
PDBTitle: crystal structure of e. coli se-met protein ydde
35d1a79a2
not modelled 44.8 35 Fold:MutS N-terminal domain-like
Superfamily:tRNA-intron endonuclease N-terminal domain-like
Family:tRNA-intron endonuclease N-terminal domain-like
36c2wawA_
not modelled 36.4 13 PDB header:unknown function
Chain: A: PDB Molecule:moba relate protein;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1
37c2gkjA_
not modelled 32.8 23 PDB header:isomerase
Chain: A: PDB Molecule:diaminopimelate epimerase;
PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap
38c3okrA_
not modelled 28.3 13 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
39d1x4pa1
not modelled 25.4 36 Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
40c1zctB_
not modelled 23.9 18 PDB header:transferase
Chain: B: PDB Molecule:glycogenin-1;
PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp
41c3d5nB_
not modelled 21.1 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:q97w15_sulso;
PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125.
42c1ym5A_
not modelled 18.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2
PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily.
43d1xkpc1
not modelled 16.8 36 Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
44c2px7A_
not modelled 16.1 10 PDB header:transferase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8
45c2vshB_
not modelled 16.0 11 PDB header:transferase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate
PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae
46d1vyva2
not modelled 14.7 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
47d1k3ra2
not modelled 14.6 12 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
48d1vyua2
not modelled 14.4 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
49d1uxoa_
not modelled 13.7 19 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:YdeN-like
50d1t0hb_
not modelled 13.7 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
51d1vpaa_
not modelled 13.6 12 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
52d1t3la2
not modelled 13.4 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
53c2rauA_
not modelled 13.4 12 PDB header:hydrolase
Chain: A: PDB Molecule:putative esterase;
PDBTitle: crystal structure of a putative lipase (np_343859.1) from sulfolobus2 solfataricus at 1.85 a resolution
54c1sneB_
not modelled 13.3 53 PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
55c1sneA_
not modelled 13.3 53 PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
56c1k3rA_
not modelled 13.3 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mt0001;
PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
57c3okrC_
not modelled 13.1 15 PDB header:transferase
Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase;
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
58c2o35A_
not modelled 12.7 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
59d2o35a1
not modelled 12.7 21 Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
60c2qkwA_
not modelled 12.7 12 PDB header:transferase
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto
61d2qkwa1
not modelled 12.7 12 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Avirulence protein AvrPto
Family:Avirulence protein AvrPto
62d1inla_
not modelled 12.3 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
63c1cn3F_
not modelled 12.3 33 PDB header:viral protein
Chain: F: PDB Molecule:fragment of coat protein vp2;
PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
64c2zviB_
not modelled 12.2 19 PDB header:isomerase
Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate
PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis
65c1okgA_
not modelled 11.6 22 PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
66c1qz7B_
not modelled 11.5 43 PDB header:cell adhesion
Chain: B: PDB Molecule:axin;
PDBTitle: beta-catenin binding domain of axin in complex with beta-2 catenin
67d1pvma3
not modelled 11.3 29 Fold:Rubredoxin-like
Superfamily:Hypothetical protein Ta0289 C-terminal domain
Family:Hypothetical protein Ta0289 C-terminal domain
68c3fybA_
not modelled 11.3 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
69c3rjoA_
not modelled 11.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: crystal structure of erap1 peptide binding domain
70c3bwbA_
not modelled 10.9 14 PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution
71c2vxhF_
not modelled 10.9 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:chlorite dismutase;
PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen
72c2qjwA_
not modelled 10.6 12 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein xcc1541;
PDBTitle: crystal structure of a putative hydrolase of the alpha/beta2 superfamily (xcc1541) from xanthomonas campestris pv. campestris at3 1.35 a resolution
73d1omha_
not modelled 10.6 7 Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
74c1vbkA_
not modelled 10.3 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
75c1jb0X_
not modelled 10.3 26 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
76d1jb0x_
not modelled 10.3 26 Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
77d2qqra1
not modelled 10.3 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
78d1a2za_
not modelled 10.2 18 Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
79d2pbla1
not modelled 9.8 13 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase
80c2j0bA_
not modelled 9.8 17 PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe;
PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese
81d1f2si_
not modelled 9.7 36 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
82c1f2sI_
not modelled 9.7 36 PDB header:hydrolase/hydrolase inhibitor
Chain: I: PDB Molecule:trypsin inhibitor a;
PDBTitle: crystal structure of the complex formed between bovine beta-2 trypsin and mcti-a, a trypsin inhibitor of squash family3 at 1.8 a resolution
83c3tqdA_
not modelled 9.7 18 PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
84c3nn4C_
not modelled 9.6 11 PDB header:oxidoreductase
Chain: C: PDB Molecule:chlorite dismutase;
PDBTitle: structure of chlorite dismutase from candidatus nitrospira defluvii2 r173k mutant
85c3orjA_
not modelled 9.6 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar-binding protein;
PDBTitle: crystal structure of a sugar-binding protein (bacova_04391) from2 bacteroides ovatus at 2.16 a resolution
86c3k6gA_
not modelled 9.6 23 PDB header:protein binding
Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1;
PDBTitle: crystal structure of rap1 and trf2 complex
87d1uoya_
not modelled 9.3 45 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Bubble protein
Family:Bubble protein
88d1t0tv_
not modelled 9.3 21 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Chlorite dismutase-like
89c3l3bA_
not modelled 9.2 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
90c3dnmA_
not modelled 9.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:esterase/lipase;
PDBTitle: crystal structure hormone-sensitive lipase from a2 metagenome library
91d1c2ya_
not modelled 9.1 21 Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
92c2jobA_
not modelled 9.1 21 PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
93c2otnB_
not modelled 9.0 25 PDB header:isomerase
Chain: B: PDB Molecule:diaminopimelate epimerase;
PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis
94d1nxia_
not modelled 9.0 42 Fold:Ferredoxin-like
Superfamily:Hypothetical protein VC0424
Family:Hypothetical protein VC0424
95c2qh5B_
not modelled 9.0 5 PDB header:isomerase
Chain: B: PDB Molecule:mannose-6-phosphate isomerase;
PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori
96d1ecfa1
not modelled 9.0 14 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
97d1q0ra_
not modelled 8.9 21 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Aclacinomycin methylesterase RdmC
98c3pcqX_
not modelled 8.9 26 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
99c3giuA_
not modelled 8.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0