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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3rjoA_

Fold library idPDB HeaderMoleculeTitle
c3rjoA_PDB header: hydrolaseChain: A: PDB Molecule: endoplasmic reticulum aminopeptidase 1;PDBTitle: crystal structure of erap1 peptide binding domain


Added to library: Sat Dec 24 22:00:37 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GFPLITITVRGRNVHMKQEHYMYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYY
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Known secondary structure (DSSP)
TT




SS
SS

SS
SS

S
SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence IVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLN
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Known secondary structure (DSSP)
GGGS
TSS
GGGGG

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAE
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Known secondary structure (DSSP) TTSS


SS

S
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLL
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Known secondary structure (DSSP) TTT
S


GGGTTS


TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence DESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRL
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Known secondary structure (DSSP) TSSS
GGGTSTTT
TT
TTTT

S
 .........360.........370.........380.........390.........400........
Sequence EEVKGFFSSLKENSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSEKLERMHHHHHH
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Known secondary structure (DSSP) TTTT





GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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