Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	A	I	N	T	K	V	K	K	A	V	I	P	V	A	G	L	G	T	R	M	L	P	A	T	K	A	I	P	K	E	M	L	P	L	V	D	K	P	L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	E	I	V	L	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	H	S	S	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K	R	V	K	R	Q	L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L
Secondary structure
SS confidence
Disorder																										?		?							?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		C	A	H	P	V	V	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E	T	G	H	S	Q	I	M	V	E	P	V	A	D	V	T	A	Y	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	K	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P	L	L	A	K	T	P	P	G	A	G	D	E	I	Q
Secondary structure
SS confidence
Disorder									?	?	?	?		?																																								?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	T	D	A	I	D	M	L	I	E	K	E	T	V	E	A	Y	H	M	K	G	K	S	H	D	C	G	N	K	L	G	Y	M	Q	A	F	V	E	Y	G	I	R	H	N	T	L	G	T	E	F	K	A	W	L	E	E	E	M	G	I
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.
Sequence		K	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2e3d chain B Region: 5 - 298 Aligned: 281 Modelled: 294 Confidence: 100.0% Identity: 91% PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase Phyre2 PDB 2pa4 chain B Region: 6 - 298 Aligned: 285 Modelled: 293 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose Phyre2 PDB 2ux8 chain G Region: 6 - 299 Aligned: 284 Modelled: 294 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. Phyre2 PDB 1h5r chain A Region: 7 - 287 Aligned: 243 Modelled: 259 Confidence: 100.0% Identity: 25% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1fxo chain A Region: 9 - 280 Aligned: 234 Modelled: 250 Confidence: 100.0% Identity: 25% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1mc3 chain A Region: 10 - 287 Aligned: 240 Modelled: 256 Confidence: 100.0% Identity: 24% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1iin chain A Region: 7 - 280 Aligned: 236 Modelled: 252 Confidence: 100.0% Identity: 25% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 3juk chain A Region: 8 - 283 Aligned: 263 Modelled: 276 Confidence: 100.0% Identity: 39% PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose Phyre2 PDB 1lvw chain A Region: 10 - 281 Aligned: 235 Modelled: 251 Confidence: 100.0% Identity: 24% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1yp2 chain A domain 2 Region: 11 - 290 Aligned: 251 Modelled: 264 Confidence: 100.0% Identity: 20% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 2x5s chain B Region: 10 - 276 Aligned: 237 Modelled: 241 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. Phyre2 PDB 2cu2 chain A Region: 4 - 276 Aligned: 237 Modelled: 242 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 Phyre2 PDB 1yp3 chain C Region: 11 - 283 Aligned: 243 Modelled: 258 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp Phyre2 PDB 3hl3 chain A Region: 3 - 290 Aligned: 243 Modelled: 267 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. Phyre2 PDB 3brk chain X Region: 4 - 286 Aligned: 251 Modelled: 257 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens Phyre2 PDB 3pnn chain A Region: 10 - 280 Aligned: 235 Modelled: 246 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 Phyre2 PDB 2cu2 chain A domain 2 Region: 4 - 275 Aligned: 236 Modelled: 240 Confidence: 100.0% Identity: 21% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: mannose-1-phosphate guanylyl transferase Phyre2 PDB 1hm8 chain A Region: 9 - 291 Aligned: 239 Modelled: 255 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a Phyre2 PDB 3d98 chain A Region: 4 - 281 Aligned: 240 Modelled: 247 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form Phyre2 PDB 2qkx chain A Region: 4 - 281 Aligned: 240 Modelled: 246 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate Phyre2 1 c2e3dB_ 2 c2pa4B_ 3 c2ux8G_ 4 d1h5ra_ 5 d1fxoa_ 6 d1mc3a_ 7 d1iina_ 8 c3jukA_ 9 d1lvwa_ 10 d1yp2a2 11 c2x5sB_ 12 c2cu2A_ 13 c1yp3C_ 14 c3hl3A_ 15 c3brkX_ 16 c3pnnA_ 17 d2cu2a2 18 c1hm8A_ 19 c3d98A_ 20 c2qkxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2e3dB_ 100.0 91 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase 2 c2pa4B_ 100.0 38 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose 3 c2ux8G_ 100.0 41 PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. 4 d1h5ra_ 100.0 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 5 d1fxoa_ 100.0 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 6 d1mc3a_ 100.0 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 7 d1iina_ 100.0 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 8 c3jukA_ 100.0 39 PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose 9 d1lvwa_ 100.0 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 10 d1yp2a2 100.0 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 11 c2x5sB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 12 c2cu2A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 13 c1yp3C_ 100.0 22 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 14 c3hl3A_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. 15 c3brkX_ 100.0 16 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 16 c3pnnA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 17 d2cu2a2 100.0 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:mannose-1-phosphate guanylyl transferase 18 c1hm8A_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 19 c3d98A_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 20 c2qkxA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 21 c2oi6A_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 22 c2v0hA_ not modelled 100.0 25 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 23 d1tzfa_ not modelled 100.0 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 24 c2ggqA_ not modelled 100.0 27 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 25 c1fwyA_ not modelled 100.0 25 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 26 d2oi6a2 not modelled 100.0 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 27 d1g97a2 not modelled 100.0 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 28 d1jyka_ not modelled 100.0 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 29 c2qh5B_ not modelled 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori 30 c2xmhB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 31 c1jylC_ not modelled 100.0 21 PDB header:transferase Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase; PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc) 32 d1vica_ not modelled 100.0 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 33 c3oamD_ not modelled 100.0 15 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 34 c3tqdA_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii 35 c2y6pC_ not modelled 99.9 17 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb 36 c2xwlB_ not modelled 99.9 19 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 37 c3polA_ not modelled 99.9 13 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 38 d1h7ea_ not modelled 99.9 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 39 d1i52a_ not modelled 99.9 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 40 d1vh1a_ not modelled 99.9 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 41 d1vpaa_ not modelled 99.9 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 42 d1w55a1 not modelled 99.9 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 43 c2wawA_ not modelled 99.9 19 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 44 d1eyra_ not modelled 99.9 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 45 d1qwja_ not modelled 99.9 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 46 d2dpwa1 not modelled 99.9 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:TTHA0179-like 47 c2we9A_ not modelled 99.8 19 PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv 48 d1vh3a_ not modelled 99.8 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 49 d1e5ka_ not modelled 99.8 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Molybdenum cofactor biosynthesis protein MobA 50 c3f1cB_ not modelled 99.8 14 PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes 51 d1w77a1 not modelled 99.8 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 52 c3rsbB_ not modelled 99.8 19 PDB header:transferase Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase; PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii 53 c3okrA_ not modelled 99.8 18 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 54 d1vgwa_ not modelled 99.8 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 55 c2vshB_ not modelled 99.8 16 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 56 c3ngwA_ not modelled 99.8 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189 57 c2px7A_ not modelled 99.8 17 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 58 c1w57A_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn 59 c2e8bA_ not modelled 99.6 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5 60 c3okrC_ not modelled 99.6 19 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 61 c3d5nB_ not modelled 99.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125. 62 d1vm8a_ not modelled 98.8 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 63 c3oc9A_ not modelled 98.7 14 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 64 d2icya2 not modelled 98.7 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 65 d1jv1a_ not modelled 98.7 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 66 c2yqsA_ not modelled 98.5 14 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 67 c3gueB_ not modelled 98.3 12 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330) 68 c2i5kB_ not modelled 98.3 12 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 69 c2oefA_ not modelled 98.2 11 PDB header:transferase Chain: A: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2, PDBTitle: open and closed structures of the udp-glucose2 pyrophosphorylase from leishmania major 70 c2q4jB_ not modelled 98.1 20 PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase 71 c3ogzA_ not modelled 98.1 15 PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form 72 c2ffuA_ not modelled 90.4 16 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 73 c1omxB_ not modelled 84.5 18 PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) 74 d2i5ea1 not modelled 83.9 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MM2497-like 75 c1xhbA_ not modelled 83.2 13 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 76 d1xhba2 not modelled 72.7 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain 77 d1omza_ not modelled 66.4 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 78 c2d7iA_ not modelled 58.7 14 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ 79 c2z86D_ not modelled 52.6 11 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 80 d1nh9a_ not modelled 50.7 26 Fold:IF3-like Superfamily:AlbA-like Family:DNA-binding protein AlbA 81 c2v3wC_ not modelled 45.7 13 PDB header:lyase Chain: C: PDB Molecule:benzoylformate decarboxylase; PDBTitle: crystal structure of the benzoylformate decarboxylase2 variant l461a from pseudomonas putida 82 d1q6za2 not modelled 43.9 12 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 83 c3cgxA_ not modelled 42.6 12 PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution 84 d1v7za_ not modelled 41.9 26 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 85 c3no4A_ not modelled 33.0 15 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 86 d2bkya1 not modelled 31.3 31 Fold:IF3-like Superfamily:AlbA-like Family:DNA-binding protein AlbA 87 d1nfja_ not modelled 26.9 27 Fold:IF3-like Superfamily:AlbA-like Family:DNA-binding protein AlbA 88 c3lubE_ not modelled 26.8 8 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 89 d2djia2 not modelled 23.7 12 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 90 d1p42a1 not modelled 20.6 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 91 d1ozha2 not modelled 20.3 14 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 92 d3bofa2 not modelled 19.8 17 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 93 c1ovmC_ not modelled 18.9 9 PDB header:lyase Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase; PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae 94 c3bcvA_ not modelled 18.4 21 PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis 95 d2uyoa1 not modelled 18.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:ML2640-like 96 d1zpda2 not modelled 14.9 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 97 c2jlaD_ not modelled 14.3 12 PDB header:transferase Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein 98 d1y7ra1 not modelled 14.2 3 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 99 c2q2kA_ not modelled 13.6 24 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0