Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP09158
DateThu Jan 5 11:02:05 GMT 2012
Unique Job ID0aad18a232184d7e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2q41D_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:spermidine synthase 1;
PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820
Confidence and coverage
Confidence:100.0% Coverage: 95%
273 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE
Secondary structure 




























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Disorder  ??????





















































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   .........70.........80.........90.........100.........110.........120
Sequence  FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY
Secondary structure 














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   .........130.........140.........150.........160.........170.........180
Sequence  LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR
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Disorder 




?


































?

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   .........190.........200.........210.........220.........230.........240
Sequence  CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND
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   .........250.........260.........270.........280........
Sequence  ALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS
Secondary structure 


















SS confidence 















































Disorder 
?????


?


????


























????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2q41 chain D

3D model

Region: 5 - 284
Aligned: 273
Modelled: 280
Confidence: 100.0%
Identity: 37%
PDB header:transferase
Chain: D: PDB Molecule:spermidine synthase 1;
PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820

Phyre2

PDB 1inl chain A

3D model

Region: 3 - 283
Aligned: 268
Modelled: 281
Confidence: 100.0%
Identity: 36%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 1xj5 chain A

3D model

Region: 5 - 284
Aligned: 279
Modelled: 280
Confidence: 100.0%
Identity: 37%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 1uir chain A

3D model

Region: 3 - 286
Aligned: 281
Modelled: 284
Confidence: 100.0%
Identity: 37%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 1iy9 chain A

3D model

Region: 4 - 283
Aligned: 273
Modelled: 274
Confidence: 100.0%
Identity: 38%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 3bwb chain A

3D model

Region: 1 - 283
Aligned: 278
Modelled: 283
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution

Phyre2

PDB 2b2c chain A domain 1

3D model

Region: 2 - 284
Aligned: 269
Modelled: 283
Confidence: 100.0%
Identity: 37%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 2o07 chain A domain 1

3D model

Region: 4 - 285
Aligned: 270
Modelled: 282
Confidence: 100.0%
Identity: 33%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 2pss chain C

3D model

Region: 7 - 285
Aligned: 263
Modelled: 267
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: C: PDB Molecule:spermidine synthase;
PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form

Phyre2

PDB 1mjf chain A

3D model

Region: 7 - 284
Aligned: 265
Modelled: 278
Confidence: 100.0%
Identity: 35%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Spermidine synthase

Phyre2

PDB 2hte chain B

3D model

Region: 7 - 284
Aligned: 265
Modelled: 278
Confidence: 100.0%
Identity: 34%
PDB header:transferase
Chain: B: PDB Molecule:spermidine synthase;
PDBTitle: the crystal structure of spermidine synthase from p. falciparum in2 complex with 5'-methylthioadenosine

Phyre2

PDB 3adn chain B

3D model

Region: 6 - 282
Aligned: 255
Modelled: 266
Confidence: 100.0%
Identity: 96%
PDB header:transferase
Chain: B: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of spermidine synthase from e. coli.

Phyre2

PDB 2cmg chain A

3D model

Region: 6 - 286
Aligned: 258
Modelled: 267
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori

Phyre2

PDB 3c6k chain C

3D model

Region: 12 - 242
Aligned: 223
Modelled: 231
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: C: PDB Molecule:spermine synthase;
PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine

Phyre2

PDB 3gjy chain A

3D model

Region: 24 - 274
Aligned: 245
Modelled: 251
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of a probable spermidine synthase from2 corynebacterium glutamicum atcc 13032

Phyre2

PDB 2b78 chain A

3D model

Region: 22 - 208
Aligned: 179
Modelled: 184
Confidence: 99.6%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans

Phyre2

PDB 3tfw chain B

3D model

Region: 72 - 236
Aligned: 154
Modelled: 165
Confidence: 99.6%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of a putative o-methyltransferase from klebsiella2 pneumoniae

Phyre2

PDB 2b78 chain A domain 2

3D model

Region: 64 - 208
Aligned: 141
Modelled: 145
Confidence: 99.5%
Identity: 15%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: hypothetical RNA methyltransferase

Phyre2

PDB 1zx0 chain A domain 1

3D model

Region: 65 - 190
Aligned: 119
Modelled: 126
Confidence: 99.5%
Identity: 18%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Guanidinoacetate methyltransferase

Phyre2

PDB 3tr6 chain A

3D model

Region: 72 - 239
Aligned: 153
Modelled: 168
Confidence: 99.5%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: structure of a o-methyltransferase from coxiella burnetii

Phyre2
1

c2q41D_
2

d1inla_
3

d1xj5a_
4

d1uira_
5

d1iy9a_
6

c3bwbA_
7

d2b2ca1
8

d2o07a1
9

c2pssC_
10

d1mjfa_
11

c2hteB_
12

c3adnB_
13

c2cmgA_
14

c3c6kC_
15

c3gjyA_
16

c2b78A_
17

c3tfwB_
18

d2b78a2
19

d1zx0a1
20

c3tr6A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2q41D_



100.0 37 PDB header:transferase
Chain: D: PDB Molecule:spermidine synthase 1;
PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820
2d1inla_



100.0 36 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
3d1xj5a_



100.0 37 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
4d1uira_



100.0 37 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
5d1iy9a_



100.0 38 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
6c3bwbA_



100.0 35 PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution
7d2b2ca1



100.0 37 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
8d2o07a1



100.0 33 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
9c2pssC_



100.0 35 PDB header:transferase
Chain: C: PDB Molecule:spermidine synthase;
PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form
10d1mjfa_



100.0 35 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
11c2hteB_



100.0 34 PDB header:transferase
Chain: B: PDB Molecule:spermidine synthase;
PDBTitle: the crystal structure of spermidine synthase from p. falciparum in2 complex with 5'-methylthioadenosine
12c3adnB_



100.0 96 PDB header:transferase
Chain: B: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of spermidine synthase from e. coli.
13c2cmgA_



100.0 19 PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori
14c3c6kC_



100.0 26 PDB header:transferase
Chain: C: PDB Molecule:spermine synthase;
PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine
15c3gjyA_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of a probable spermidine synthase from2 corynebacterium glutamicum atcc 13032
16c2b78A_



99.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans
17c3tfwB_



99.6 19 PDB header:transferase
Chain: B: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of a putative o-methyltransferase from klebsiella2 pneumoniae
18d2b78a2



99.5 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
19d1zx0a1



99.5 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
20c3tr6A_



99.5 19 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: structure of a o-methyltransferase from coxiella burnetii
21c3duwB_



not modelled 99.5 16 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase, putative;
PDBTitle: crystal structural analysis of the o-methyltransferase from2 bacillus cereus in complex sah
22c2gpyB_



not modelled 99.5 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
23c3cbgA_



not modelled 99.5 20 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: functional and structural characterization of a2 cationdependent o-methyltransferase from the3 cyanobacterium synechocystis sp. strain pcc 6803
24c3ntvB_



not modelled 99.5 14 PDB header:transferase
Chain: B: PDB Molecule:mw1564 protein;
PDBTitle: crystal structure of a putative caffeoyl-coa o-methyltransferase from2 staphylococcus aureus
25c3dr5A_



not modelled 99.5 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of the q8nrd3_corgl protein from2 corynebacterium glutamicum. northeast structural genomics3 consortium target cgr117.
26c3c0kB_



not modelled 99.5 15 PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
27c2ozvA_



not modelled 99.4 13 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
28d2as0a2



not modelled 99.4 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
29d1susa1



not modelled 99.4 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
30d1xcla_



not modelled 99.4 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
31c3c3yB_



not modelled 99.4 18 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of pfomt, phenylpropanoid and flavonoid o-2 methyltransferase from m. crystallinum
32d1p1ca_



not modelled 99.4 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
33c2pjdA_



not modelled 99.4 20 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
34d2avda1



not modelled 99.4 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
35c3jwgA_



not modelled 99.4 21 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-cthen1-c
36c2as0A_



not modelled 99.4 11 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase
37c2hnkC_



not modelled 99.4 15 PDB header:transferase
Chain: C: PDB Molecule:sam-dependent o-methyltransferase;
PDBTitle: crystal structure of sam-dependent o-methyltransferase from2 pathogenic bacterium leptospira interrogans
38d1yzha1



not modelled 99.4 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
39d2igta1



not modelled 99.4 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
40c2yvlB_



not modelled 99.4 18 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
41c3dmgA_



not modelled 99.4 20 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
42c1wxwA_



not modelled 99.4 9 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8
43d2fcaa1



not modelled 99.4 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
44d1dusa_



not modelled 99.4 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
45c1yb2A_



not modelled 99.4 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
46d1yb2a1



not modelled 99.4 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
47c3mb5A_



not modelled 99.3 19 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
48c3evzA_



not modelled 99.3 17 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
49d1i9ga_



not modelled 99.3 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
50d1nv8a_



not modelled 99.3 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
51d1xtpa_



not modelled 99.3 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
52c3lpmA_



not modelled 99.3 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
53c3r3hA_



not modelled 99.3 14 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase, sam-dependent;
PDBTitle: crystal structure of o-methyltransferase from legionella pneumophila
54d1wxxa2



not modelled 99.3 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
55d1o54a_



not modelled 99.3 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
56d2ex4a1



not modelled 99.3 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
57c3g5tA_



not modelled 99.3 15 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
58d1l1ea_



not modelled 99.3 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
59d1r74a_



not modelled 99.3 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
60d1l3ia_



not modelled 99.3 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
61c3dxyA_



not modelled 99.3 19 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
62d1kpga_



not modelled 99.3 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
63c2pwyB_



not modelled 99.3 13 PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase
64c3mtiA_



not modelled 99.2 14 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
65d2b3ta1



not modelled 99.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
66c3lecA_



not modelled 99.2 10 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
67c2esrB_



not modelled 99.2 15 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: conserved hypothetical protein- streptococcus pyogenes
68c2e58D_



not modelled 99.2 14 PDB header:transferase
Chain: D: PDB Molecule:mnmc2;
PDBTitle: crystal structure of mnmc2 from aquifex aeolicus
69d1tpya_



not modelled 99.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
70c3e05B_



not modelled 99.2 14 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
71c2fk8A_



not modelled 99.2 19 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
72d1dl5a1



not modelled 99.2 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
73d1i1na_



not modelled 99.2 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
74d1ri5a_



not modelled 99.2 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
75c1z3cA_



not modelled 99.2 20 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
76d2cl5a1



not modelled 99.2 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
77c3grzA_



not modelled 99.2 15 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
78c3fpjA_



not modelled 99.2 15 PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine
79c3ku1E_



not modelled 99.2 13 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
80d1kpia_



not modelled 99.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
81c3eeyJ_



not modelled 99.2 12 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
82d2nxca1



not modelled 99.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
83d2fk8a1



not modelled 99.2 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
84d1vbfa_



not modelled 99.2 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
85c3f4kA_



not modelled 99.2 15 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
86c3ofkA_



not modelled 99.2 18 PDB header:transferase
Chain: A: PDB Molecule:nodulation protein s;
PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah)
87c1dl5A_



not modelled 99.2 22 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
88c2vduE_



not modelled 99.2 17 PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
89d2esra1



not modelled 99.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
90d2dula1



not modelled 99.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
91d2fpoa1



not modelled 99.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
92c3lccA_



not modelled 99.2 15 PDB header:transferase
Chain: A: PDB Molecule:putative methyl chloride transferase;
PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana
93c3lbfC_



not modelled 99.2 26 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
94c3axtA_



not modelled 99.2 19 PDB header:transferase
Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase
PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine
95c3gnlB_



not modelled 99.2 10 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
96d1r18a_



not modelled 99.2 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
97c3e7pA_



not modelled 99.2 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
98c3jwhA_



not modelled 99.2 17 PDB header:transferase
Chain: A: PDB Molecule:hen1;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-avhen1-c
99d1p91a_



not modelled 99.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
100c3g07C_



not modelled 99.2 17 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
101d2gh1a1



not modelled 99.1 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:BC2162-like
102c2pbfA_



not modelled 99.1 16 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate
PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine
103d2bzga1



not modelled 99.1 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
104c3ujcA_



not modelled 99.1 14 PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine
105d1im8a_



not modelled 99.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein HI0319 (YecO)
106c3m70A_



not modelled 99.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
107c3bgdB_



not modelled 99.1 10 PDB header:transferase
Chain: B: PDB Molecule:thiopurine s-methyltransferase;
PDBTitle: thiopurine s-methyltransferase
108c3p9nA_



not modelled 99.1 16 PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase
109d2i6ga1



not modelled 99.1 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TehB-like
110c2yxeB_



not modelled 99.1 19 PDB header:transferase
Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase
111d1xvaa_



not modelled 99.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
112c3bgvC_



not modelled 99.1 15 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
113d2o57a1



not modelled 99.1 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
114c3hm2G_



not modelled 99.1 17 PDB header:transferase
Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase;
PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae
115d1af7a2



not modelled 99.1 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain
116d1wzna1



not modelled 99.1 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
117d1m6ya2



not modelled 99.1 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
118d1pjza_



not modelled 99.1 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
119d2b25a1



not modelled 99.1 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
120c3ocjA_



not modelled 99.1 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0