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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2q41D_

Fold library idPDB HeaderMoleculeTitle
c2q41D_PDB header: transferaseChain: D: PDB Molecule: spermidine synthase 1;PDBTitle: ensemble refinement of the protein crystal structure of2 spermidine synthase from arabidopsis thaliana gene3 at1g23820


Added to library: Tue Mar 16 13:28:17 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ACFSTVIPGWFSEXSPXWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQ
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Known secondary structure (DSSP)


S
SSTT

TTSTT


SS
SSS
BTTSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EXITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVN
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Known secondary structure (DSSP) TTTSSS

S
SSSTT
TT





TTTGGGTT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHXDIIED
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Known secondary structure (DSSP)
S
SS
SS




SSSGGGGGGS


TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCSTEGPDVDFKHPLNPIGPLKFYNAEIHSAAFCLPSFA
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Known secondary structure (DSSP)
SS
TTSGGG
SSS


TTS
SS




SS

TT


 .....
Sequence KKVIE
Predicted secondary structure
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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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