Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP42915
DateThu Jan 5 12:02:14 GMT 2012
Unique Job ID07597dd2772b4d41

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 91%
759 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
Secondary structure 
SS confidence 
Disorder  ?????????????
?????
?
?????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
Secondary structure 
SS confidence 
Disorder 
?
?????
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGI
Secondary structure 
SS confidence 
Disorder  ??
?
?
?????????
?????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
Secondary structure 
SS confidence 
Disorder  ???
??????????
?
?
??????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
Secondary structure 
SS confidence 
Disorder 
?
?
??????
??????????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  AIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMM
Secondary structure 
SS confidence 
Disorder 
?
???
?
?????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
Secondary structure 
SS confidence 
Disorder  ?????
???????
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
Secondary structure 
SS confidence 
Disorder 
?
?
???????????
?
??
???
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  SFNEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ
Secondary structure 
SS confidence 
Disorder 
??????????????
?????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  QWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLD
Secondary structure 
SS confidence 
Disorder 
????????
??????
??????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  GSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVV
Secondary structure 
SS confidence 
Disorder  ???
???
?????????
?????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  IHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
Secondary structure 
SS confidence 
Disorder 
???
????
??????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTG
Secondary structure 
SS confidence 
Disorder  ?
???
Disorder confidence 
 
   .........790.........800.........810.........820.........830........
Sequence  QQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
Secondary structure 
SS confidence 
Disorder 
???
???
???
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 70 - 837
Aligned: 759
Modelled: 768
Confidence: 100.0%
Identity: 40%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 3ohn chain A

3D model

Region: 182 - 659
Aligned: 457
Modelled: 478
Confidence: 100.0%
Identity: 40%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 2vqi chain A

3D model

Region: 183 - 663
Aligned: 462
Modelled: 481
Confidence: 100.0%
Identity: 30%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 68 - 182
Aligned: 114
Modelled: 115
Confidence: 99.9%
Identity: 34%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 43 - 165
Aligned: 120
Modelled: 123
Confidence: 99.9%
Identity: 33%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 68 - 168
Aligned: 100
Modelled: 101
Confidence: 99.8%
Identity: 32%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 283 - 358
Aligned: 70
Modelled: 76
Confidence: 99.8%
Identity: 43%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 2xet chain B

3D model

Region: 755 - 837
Aligned: 82
Modelled: 83
Confidence: 99.7%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 3l48 chain B

3D model

Region: 753 - 837
Aligned: 78
Modelled: 85
Confidence: 99.5%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 756 - 820
Aligned: 63
Modelled: 65
Confidence: 94.8%
Identity: 13%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 2nsm chain A

3D model

Region: 756 - 806
Aligned: 49
Modelled: 51
Confidence: 94.4%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1h8l chain A

3D model

Region: 754 - 820
Aligned: 65
Modelled: 67
Confidence: 94.3%
Identity: 12%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 1uwy chain A

3D model

Region: 756 - 836
Aligned: 77
Modelled: 81
Confidence: 93.5%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 3pdg chain A

3D model

Region: 292 - 349
Aligned: 56
Modelled: 58
Confidence: 93.2%
Identity: 14%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pe9 chain B

3D model

Region: 288 - 358
Aligned: 68
Modelled: 71
Confidence: 92.7%
Identity: 12%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 756 - 836
Aligned: 79
Modelled: 79
Confidence: 92.5%
Identity: 19%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 2x5p chain A

3D model

Region: 741 - 804
Aligned: 60
Modelled: 64
Confidence: 91.7%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b

Phyre2

PDB 3mn8 chain A

3D model

Region: 756 - 806
Aligned: 50
Modelled: 51
Confidence: 91.2%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 1nkg chain A domain 1

3D model

Region: 755 - 824
Aligned: 69
Modelled: 70
Confidence: 88.6%
Identity: 13%
Fold: Prealbumin-like
Superfamily: Starch-binding domain-like
Family: Rhamnogalacturonase B, RhgB, middle domain

Phyre2

PDB 1w0n chain A

3D model

Region: 267 - 346
Aligned: 80
Modelled: 79
Confidence: 85.6%
Identity: 21%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2
1
c3rfzB_
2
c3ohnA_
3
c2vqiA_
4
d1zdva1
5
d3bwud1
6
d1zdxa1
7
c3fcgB_
8
c2xetB_
9
c3l48B_
10
d1h8la1
11
c2nsmA_
12
c1h8lA_
13
c1uwyA_
14
c3pdgA_
15
c3pe9B_
16
d1uwya1
17
c2x5pA_
18
c3mn8A_
19
d1nkga1
20
d1w0na_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 40 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c3ohnA_
100.0 40 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
3c2vqiA_
100.0 30 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
4d1zdva1
99.9 34 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d3bwud1
99.9 33 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6d1zdxa1
99.8 32 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
7c3fcgB_
99.8 43 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
8c2xetB_
99.7 24 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
9c3l48B_
99.5 24 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
10d1h8la1
94.8 13 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
11c2nsmA_
94.4 14 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
12c1h8lA_
94.3 12 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
13c1uwyA_
93.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
14c3pdgA_
93.2 14 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
15c3pe9B_
92.7 12 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
16d1uwya1
92.5 19 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
17c2x5pA_
91.7 20 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
18c3mn8A_
91.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
19d1nkga1
88.6 13 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
20d1w0na_
85.6 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
21c1d2pA_
not modelled 85.1 19 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
22c3pe9D_
not modelled 81.8 13 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
23c3pe9A_
not modelled 81.0 18 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
24c3pe9C_
not modelled 81.0 18 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
25c3c12A_
not modelled 75.1 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
26c3e8vA_
not modelled 67.2 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
27d2burb1
not modelled 60.5 27 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
28d3pccm_
not modelled 60.0 27 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
29c2bpbA_
not modelled 59.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
30c3n8eA_
not modelled 56.3 16 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
31c1u00A_
not modelled 55.3 16 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
32c2vnvC_
not modelled 53.9 9 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
33c2op6A_
not modelled 53.5 18 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
34c2ww8A_
not modelled 53.1 14 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
35c3bryB_
not modelled 51.9 17 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
36d1t16a_
not modelled 51.7 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
37c3dpqE_
not modelled 51.5 22 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
38c1bprA_
not modelled 50.5 22 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
39c2r32A_
not modelled 49.7 29 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
40d2vzsa4
not modelled 46.6 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
41c2boyC_
not modelled 43.4 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
42c2a9dB_
not modelled 43.1 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161
43d2a9da1
not modelled 40.7 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
44d1yuwa1
not modelled 39.9 16 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
45c3hj8A_
not modelled 39.1 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
46c1nkgA_
not modelled 38.0 13 PDB header:lyase
Chain: A: PDB Molecule:rhamnogalacturonase b;
PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus
47d3pcca_
not modelled 37.7 18 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
48d1s9aa_
not modelled 37.6 26 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
49d1v8ha1
not modelled 37.4 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
50c3dqgC_
not modelled 37.4 18 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
51d2je8a4
not modelled 36.4 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
52d1edqa1
not modelled 35.4 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
53d2dj4a1
not modelled 35.0 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
54c3rghA_
not modelled 34.2 40 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
55d2bp3a1
not modelled 32.8 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
56c3kptA_
not modelled 31.9 20 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
57d2e9ia1
not modelled 31.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
58d1wlha1
not modelled 30.5 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
59d1aoza2
not modelled 30.5 8 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
60c3b9eA_
not modelled 30.3 7 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
61c3d33B_
not modelled 28.4 14 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
62d3ecfa1
not modelled 27.6 14 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ava4193-like
63d2j3sa2
not modelled 27.4 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
64d2d7pa1
not modelled 26.3 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
65d2dmca1
not modelled 25.9 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
66c2e9jA_
not modelled 25.5 13 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
67c3fn9B_
not modelled 25.1 8 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
68d2ag4a1
not modelled 25.0 11 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
69c2brqB_
not modelled 25.0 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
70d2bura1
not modelled 24.7 25 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
71d2w0pa1
not modelled 24.6 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
72d2di8a1
not modelled 24.6 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
73d2dica1
not modelled 24.3 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
74d2dmba1
not modelled 23.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75d2d7oa1
not modelled 23.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
76d1v05a_
not modelled 23.7 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
77c2jf1A_
not modelled 23.4 33 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
78d1qfha2
not modelled 23.4 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
79d1qfha1
not modelled 23.2 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80d2di9a1
not modelled 23.0 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
81d2d7ma1
not modelled 22.8 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
82c2oxgE_
not modelled 22.7 17 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
83c2xsuA_
not modelled 22.4 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
84d2diba1
not modelled 21.8 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d2diaa1
not modelled 21.2 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
86d1ci3m2
not modelled 21.0 27 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
87c2xicB_
not modelled 21.0 19 PDB header:cell adhesion
Chain: B: PDB Molecule:ancillary protein 1;
PDBTitle: pilus-presented adhesin, spy0125 (cpa), p212121 form (esrf data)
88c2brqA_
not modelled 20.9 33 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
89c2w0pB_
not modelled 20.9 33 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
90c3iswB_
not modelled 20.9 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
91c3cnkB_
not modelled 20.7 13 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
92c2k7qA_
not modelled 20.6 33 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 18-19
93d1yq2a3
not modelled 20.3 24 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
94c3n9tA_
not modelled 20.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
95c2boiA_
not modelled 19.9 21 PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside
96c2k9uA_
not modelled 19.5 40 PDB header:structural protein
Chain: A: PDB Molecule:gamma filamin;
PDBTitle: solution nmr structure of the filamin-migfilin complex
97c1ksrA_
not modelled 19.4 27 PDB header:actin binding protein
Chain: A: PDB Molecule:gelation factor;
PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures
98c3k1dA_
not modelled 19.1 15 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
99c3pddA_
not modelled 19.0 14 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0