Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	K	R	N	I	F	L	V	G	P	M	G	A	G	K	S	T	I	G	R	Q	L	A	Q	Q	L	N	M	E	F	Y	D	S	D	Q	E	I	E	K	R	T	G	A	D	V	G	W	V	F	D	L	E	G	E	E	G	F	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	R	E	E	K	V	I	N	E	L	T	E	K	Q	G	I	V	L	A	T	G	G	G	S	V	K	S	R	E	T	R	N	R	L	S	A	R	G	V	V	V	Y	L	E	T	T	I	E	K	Q	L	A	R	T	Q	R	D	K	K	R
Secondary structure
SS confidence
Disorder														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Sequence		P	L	L	H	V	E	T	P	P	R	E	V	L	E	A	L	A	N	E	R	N	P	L	Y	E	E	I	A	D	V	T	I	R	T	D	D	Q	S	A	K	V	V	A	N	Q	I	I	H	M	L	E	S	N
Secondary structure
SS confidence
Disorder				?	?	?		?	?	?																																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3trf chain B Region: 5 - 171 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 44% PDB header:transferase Chain: B: PDB Molecule:shikimate kinase; PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii Phyre2 PDB 2iyv chain A domain 1 Region: 5 - 170 Aligned: 164 Modelled: 166 Confidence: 99.9% Identity: 37% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Shikimate kinase (AroK) Phyre2 PDB 1e6c chain A Region: 3 - 171 Aligned: 167 Modelled: 169 Confidence: 99.9% Identity: 32% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Shikimate kinase (AroK) Phyre2 PDB 1via chain A Region: 5 - 171 Aligned: 161 Modelled: 167 Confidence: 99.9% Identity: 29% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Shikimate kinase (AroK) Phyre2 PDB 1kag chain A Region: 3 - 171 Aligned: 158 Modelled: 169 Confidence: 99.9% Identity: 97% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Shikimate kinase (AroK) Phyre2 PDB 2pt5 chain D Region: 5 - 173 Aligned: 154 Modelled: 154 Confidence: 99.9% Identity: 36% PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5 Phyre2 PDB 1zui chain A Region: 5 - 170 Aligned: 158 Modelled: 166 Confidence: 99.9% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase Phyre2 PDB 3nwj chain B Region: 1 - 172 Aligned: 172 Modelled: 172 Confidence: 99.9% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:atsk2; PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2) Phyre2 PDB 3t61 chain A Region: 2 - 172 Aligned: 164 Modelled: 161 Confidence: 99.8% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:gluconokinase; PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021 Phyre2 PDB 1knq chain A Region: 2 - 172 Aligned: 165 Modelled: 171 Confidence: 99.8% Identity: 16% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Gluconate kinase Phyre2 PDB 3hdt chain B Region: 2 - 172 Aligned: 159 Modelled: 171 Confidence: 99.8% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940 Phyre2 PDB 1rkb chain A Region: 1 - 172 Aligned: 165 Modelled: 172 Confidence: 99.8% Identity: 18% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 1q3t chain A Region: 1 - 172 Aligned: 165 Modelled: 172 Confidence: 99.8% Identity: 19% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 3akc chain A Region: 3 - 172 Aligned: 161 Modelled: 164 Confidence: 99.8% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 Phyre2 PDB 2yvu chain A Region: 1 - 172 Aligned: 167 Modelled: 172 Confidence: 99.8% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195 Phyre2 PDB 3fdi chain A Region: 6 - 172 Aligned: 152 Modelled: 167 Confidence: 99.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. Phyre2 PDB 2bwj chain C Region: 1 - 172 Aligned: 172 Modelled: 172 Confidence: 99.8% Identity: 15% PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5 Phyre2 PDB 2h92 chain C Region: 6 - 172 Aligned: 161 Modelled: 161 Confidence: 99.8% Identity: 25% PDB header:transferase Chain: C: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate Phyre2 PDB 1cke chain A Region: 2 - 172 Aligned: 158 Modelled: 165 Confidence: 99.8% Identity: 21% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 1y63 chain A Region: 3 - 172 Aligned: 159 Modelled: 164 Confidence: 99.8% Identity: 18% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 1 c3trfB_ 2 d2iyva1 3 d1e6ca_ 4 d1viaa_ 5 d1kaga_ 6 c2pt5D_ 7 c1zuiA_ 8 c3nwjB_ 9 c3t61A_ 10 d1knqa_ 11 c3hdtB_ 12 d1rkba_ 13 d1q3ta_ 14 c3akcA_ 15 c2yvuA_ 16 c3fdiA_ 17 c2bwjC_ 18 c2h92C_ 19 d1ckea_ 20 d1y63a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499