Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	P	N	F	L	F	V	M	T	D	T	Q	A	T	N	M	V	G	C	Y	S	G	K	P	L	N	T	Q	N	I	D	S	L	A	A	E	G	I	R	F	N	S	A	Y	T	C	S	P	V	C	T	P	A	R	A	G	L	F
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	G	I	Y	A	N	Q	S	G	P	W	T	N	N	V	A	P	G	K	N	I	S	T	M	G	R	Y	F	K	D	A	G	Y	H	T	C	Y	I	G	K	W	H	L	D	G	H	D	Y	F	G	T	G	E	C	P	P	E	W	D	A
Secondary structure
SS confidence
Disorder												?		?	?	?																															?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	Y	W	F	D	G	A	N	Y	L	S	E	L	T	E	K	E	I	S	L	W	R	N	G	L	N	S	V	E	D	L	Q	A	N	H	I	D	E	T	F	T	W	A	H	R	I	S	N	R	A	V	D	F	L	Q	Q	P	A	R	A
Secondary structure
SS confidence
Disorder										?	?		?	?	?	?	?	?		?				?							?		?																									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	E	P	F	L	M	V	V	S	Y	D	E	P	H	H	P	F	T	C	P	V	E	Y	L	E	K	Y	A	D	F	Y	Y	E	L	G	E	K	A	Q	D	D	L	A	N	K	P	E	H	H	R	L	W	A	Q	A	M	P	S	P	V
Secondary structure
SS confidence
Disorder																																												?						?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	D	D	G	L	Y	H	H	P	L	Y	F	A	C	N	D	F	V	D	D	Q	I	G	R	V	I	N	A	L	T	P	E	Q	R	E	N	T	W	V	I	Y	T	S	D	H	G	E	M	M	G	A	H	K	L	I	S	K	G	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		M	Y	D	D	I	T	R	I	P	L	I	I	R	S	P	Q	G	E	R	R	Q	V	D	T	P	V	S	H	I	D	L	L	P	T	M	M	A	L	A	D	I	E	K	P	E	I	L	P	G	E	N	I	L	A	V	K	E	P	R	G
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	M	V	E	F	N	R	Y	E	I	E	H	D	S	F	G	G	F	I	P	V	R	C	W	V	T	D	D	F	K	L	V	L	N	L	F	T	S	D	E	L	Y	D	R	R	N	D	P	N	E	M	H	N	L	I	D	D	I	R	F
Secondary structure
SS confidence
Disorder																?	?	?	?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		A	D	V	R	S	K	M	H	D	A	L	L	D	Y	M	D	K	I	R	D	P	F	R	S	Y	Q	W	S	L	R	P	W	R	K	D	A	R	P	R	W	M	G	A	F	R	P	R	P	Q	D	G	Y	S	P	V	V	R	D	Y	D
Secondary structure
SS confidence
Disorder																														?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Sequence		T	G	L	P	T	Q	G	V	K	V	E	E	K	K	Q	K	F
Secondary structure
SS confidence
Disorder		?	?			?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vqr chain A Region: 3 - 441 Aligned: 436 Modelled: 439 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily Phyre2 PDB 3ed4 chain A Region: 3 - 451 Aligned: 432 Modelled: 435 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli Phyre2 PDB 2qzu chain A Region: 2 - 445 Aligned: 430 Modelled: 440 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 Phyre2 PDB 1hdh chain A Region: 2 - 441 Aligned: 426 Modelled: 440 Confidence: 100.0% Identity: 25% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 3b5q chain B Region: 2 - 466 Aligned: 434 Modelled: 436 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution Phyre2 PDB 1fsu chain A Region: 2 - 464 Aligned: 419 Modelled: 428 Confidence: 100.0% Identity: 22% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1auk chain A Region: 2 - 460 Aligned: 416 Modelled: 419 Confidence: 100.0% Identity: 22% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1p49 chain A Region: 2 - 458 Aligned: 413 Modelled: 416 Confidence: 100.0% Identity: 25% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 3lxq chain B Region: 2 - 432 Aligned: 352 Modelled: 356 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Phyre2 PDB 2w8d chain B Region: 2 - 427 Aligned: 356 Modelled: 374 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis Phyre2 PDB 2w5t chain A Region: 2 - 437 Aligned: 357 Modelled: 368 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Phyre2 PDB 2zkt chain B Region: 1 - 346 Aligned: 296 Modelled: 305 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii Phyre2 PDB 3q3q chain A Region: 2 - 361 Aligned: 313 Modelled: 316 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 Phyre2 PDB 2gso chain B Region: 3 - 357 Aligned: 260 Modelled: 272 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate Phyre2 PDB 3m8y chain C Region: 2 - 356 Aligned: 288 Modelled: 306 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation Phyre2 PDB 1o98 chain A domain 2 Region: 3 - 353 Aligned: 272 Modelled: 282 Confidence: 100.0% Identity: 16% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain Phyre2 PDB 2i09 chain A Region: 1 - 356 Aligned: 294 Modelled: 309 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Phyre2 PDB 2xr9 chain A Region: 2 - 363 Aligned: 252 Modelled: 268 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) Phyre2 PDB 2xrg chain A Region: 2 - 363 Aligned: 257 Modelled: 268 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor Phyre2 PDB 2i09 chain A domain 1 Region: 1 - 356 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 18% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: DeoB catalytic domain-like Phyre2 1 c2vqrA_ 2 c3ed4A_ 3 c2qzuA_ 4 d1hdha_ 5 c3b5qB_ 6 d1fsua_ 7 d1auka_ 8 d1p49a_ 9 c3lxqB_ 10 c2w8dB_ 11 c2w5tA_ 12 c2zktB_ 13 c3q3qA_ 14 c2gsoB_ 15 c3m8yC_ 16 d1o98a2 17 c2i09A_ 18 c2xr9A_ 19 c2xrgA_ 20 d2i09a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vqrA_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 2 c3ed4A_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 3 c2qzuA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 4 d1hdha_ 100.0 25 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 5 c3b5qB_ 100.0 24 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 6 d1fsua_ 100.0 22 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 7 d1auka_ 100.0 22 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 8 d1p49a_ 100.0 25 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 9 c3lxqB_ 100.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 10 c2w8dB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 11 c2w5tA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. 12 c2zktB_ 100.0 18 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 13 c3q3qA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 14 c2gsoB_ 100.0 24 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate 15 c3m8yC_ 100.0 18 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 16 d1o98a2 100.0 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 17 c2i09A_ 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 18 c2xr9A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 19 c2xrgA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 20 d2i09a1 100.0 18 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 21 c3szzA_ not modelled 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 22 d1ei6a_ not modelled 100.0 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase 23 c1o98A_ not modelled 99.8 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 24 c2d1gB_ not modelled 99.7 15 PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate 25 c3igzB_ not modelled 99.7 19 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 26 c2iucB_ not modelled 99.6 16 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 27 d1y6va1 not modelled 99.4 19 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 28 d1k7ha_ not modelled 99.4 20 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 29 c1ew2A_ not modelled 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 30 d1zeda1 not modelled 99.4 14 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 31 c3a52A_ not modelled 99.3 18 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 32 c2x98A_ not modelled 99.3 19 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 33 c3e2dB_ not modelled 99.1 24 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 34 c2w0yB_ not modelled 99.1 13 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 35 c3iddA_ not modelled 95.1 19 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728 36 d1b4ub_ not modelled 67.7 8 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 37 d1jxha_ not modelled 45.5 44 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 38 d1j33a_ not modelled 25.3 20 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 39 d1xo1a2 not modelled 25.3 12 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 40 c2xokG_ not modelled 23.8 38 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 41 d1fs0g_ not modelled 21.3 23 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 42 c2kjzA_ not modelled 21.0 29 PDB header:unknown function Chain: A: PDB Molecule:atc0852; PDBTitle: solution nmr structure of protein atc0852 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att2. 43 d1l5oa_ not modelled 18.8 30 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 44 c3owqB_ not modelled 18.5 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin1025 protein; PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164 45 d1mm0a_ not modelled 18.0 29 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Insect defensins 46 c2vyoA_ not modelled 17.7 12 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 47 c3oaaO_ not modelled 17.5 10 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 48 c2d0jD_ not modelled 15.7 12 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 49 d1l6sa_ not modelled 15.3 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 50 d3cu0a1 not modelled 14.7 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 51 c3anyB_ not modelled 14.0 15 PDB header:lyase Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol 52 d2c1ha1 not modelled 13.4 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 53 c3absD_ not modelled 13.0 15 PDB header:lyase Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine 54 d1gzga_ not modelled 12.8 31 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 55 d1yt3a2 not modelled 12.0 15 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 56 c2r1fB_ not modelled 11.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase; PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli 57 d2iw0a1 not modelled 11.6 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 58 d1vi7a1 not modelled 10.8 5 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 59 c3obkH_ not modelled 10.2 19 PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen 60 c2qe7G_ not modelled 10.1 31 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 61 d1cmwa2 not modelled 10.1 28 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 62 c2zuuA_ not modelled 10.1 21 PDB header:transferase Chain: A: PDB Molecule:lacto-n-biose phosphorylase; PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac 63 d1tfra2 not modelled 9.8 28 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 64 c2iw0A_ not modelled 9.3 16 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 65 d2cvea1 not modelled 9.2 10 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 66 d1v7ba2 not modelled 8.4 17 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 67 c2pn1A_ not modelled 8.1 18 PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution 68 d2cz4a1 not modelled 7.8 15 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 69 d2hrca1 not modelled 7.7 38 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 70 d1rkba_ not modelled 7.5 30 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 71 c2edgA_ not modelled 7.5 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: solution structure of the gcv_h domain from mouse glycine 72 d2b8ea1 not modelled 7.3 14 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 73 d1onla_ not modelled 7.3 13 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 74 c3bijC_ not modelled 7.0 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein gsu0716; PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13 75 d1iq0a1 not modelled 7.0 35 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 76 c2cveA_ not modelled 6.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 77 d1dxya2 not modelled 6.8 18 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 78 d1w0ba_ not modelled 6.8 21 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 79 d1v8za1 not modelled 6.8 12 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 80 d1v82a_ not modelled 6.8 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 81 c1ou5A_ not modelled 6.7 8 PDB header:translation, transferase Chain: A: PDB Molecule:trna cca-adding enzyme; PDBTitle: crystal structure of human cca-adding enzyme 82 c3dqzB_ not modelled 6.6 22 PDB header:lyase Chain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein; PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana 83 c2ihnA_ not modelled 6.6 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 84 d2fiqa1 not modelled 6.5 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 85 c3iynR_ not modelled 6.4 14 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 86 d3adka_ not modelled 6.4 30 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 87 d1wmga_ not modelled 6.3 17 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 88 d1ve1a1 not modelled 6.3 8 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 89 c2ka7A_ not modelled 6.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: nmr solution structure of tm0212 at 40 c 90 d1gm6a_ not modelled 6.3 3 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 91 d1exsa_ not modelled 6.2 12 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 92 d1szpb1 not modelled 6.2 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 93 c3aqnA_ not modelled 6.2 21 PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) 94 c2ppvA_ not modelled 6.1 17 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution 95 d3bkjh1 not modelled 6.0 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 96 c2v6lI_ not modelled 6.0 13 PDB header:protein transport Chain: I: PDB Molecule:mxih; PDBTitle: molecular model of a type iii secretion system needle 97 c1vi7A_ not modelled 5.9 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 98 d2ca5a1 not modelled 5.9 13 Fold:Long alpha-hairpin Superfamily:MxiH-like Family:MxiH-like 99 c2r9vA_ not modelled 5.8 28 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0