Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
Descriptionbad_result
DateSun Sep 7 16:40:49 BST 2014
Unique Job IDd4c0b42a3223e636
SequenceMTLNKLTKKE ... Download FASTA
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.007 Y:34.289 Z:26.422
Model (left) based on template c2dmwA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
Confidence and coverage
Confidence: 41.2% Coverage: 16%
44 residues ( 16% of your sequence) have been modelled with 41.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2dmwA_



41.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
2c3htkB_



38.7 18
PDB header:recombination/replication/ligase
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5;
PDBTitle: crystal structure of mms21 and smc5 complex
3c4bh6L_



35.3 41
PDB header:cell cycle
Chain: L: PDB Molecule:apc/c-cdh1 modulator 1;
PDBTitle: insights into degron recognition by apc coactivators from2 the structure of an acm1-cdh1 complex
4c4bh6I_



33.2 41
PDB header:cell cycle
Chain: I: PDB Molecule:apc/c-cdh1 modulator 1;
PDBTitle: insights into degron recognition by apc coactivators from2 the structure of an acm1-cdh1 complex
5c2laiA_



31.0 39
PDB header:signaling protein
Chain: A: PDB Molecule:avirulence protein atr13;
PDBTitle: hyaloperonospora arabidopsidis effector protein atr13
6c2qr4B_



28.5 10
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase m3b, oligoendopeptidase f;
PDBTitle: crystal structure of oligoendopeptidase-f from enterococcus faecium
7c2rrfA_



27.3 29
PDB header:unknown function
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21;
PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21
8c3aqpB_



26.7 14
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
9d1j2za_



25.5 14
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
10c1yx5A_



18.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: solution structure of s5a uim-1/ubiquitin complex
11c4g4sO_



17.7 10
PDB header:hydrolase/chaperone
Chain: O: PDB Molecule:proteasome chaperone 1;
PDBTitle: structure of proteasome-pba1-pba2 complex
12d1oaia_



17.6 11
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
13d1hh4e_



17.5 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
14d2i4ra1



16.8 35
Fold:AtpF-like
Superfamily:AtpF-like
Family:AtpF-like
15c4ljoA_



16.3 19
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf31;
PDBTitle: structure of an active ligase (hoip)/ubiquitin transfer complex
16d1t3qa1



16.3 20
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
17d2ebfx1



15.8 20
Fold:PMT central region-like
Superfamily:PMT central region-like
Family:PMT central region-like
18d1v97a1



15.3 21
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
19d1su3a1



15.1 22
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
20d1go5a_



14.8 13
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
21c4b19A_



not modelled 14.8 26
PDB header:toxin
Chain: A: PDB Molecule:pepa1;
PDBTitle: s. aureus pepa1 nmr structure
22d1ds6b_



not modelled 14.5 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
23d1rm6c1



not modelled 13.7 17
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
24c4pasA_



not modelled 13.7 20
PDB header:signaling protein
Chain: A: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 1;
PDBTitle: heterodimeric coiled-coil structure of human gaba(b) receptor
25c2hjmB_



not modelled 13.4 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein pf1176;
PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus
26d2g7la1



not modelled 13.0 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
27c2j0fC_



not modelled 12.4 14
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
28c4mlcA_



not modelled 12.2 17
PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: abc transporter substrate-binding protein fromdesulfitobacterium2 hafniense
29c2jp7A_



not modelled 12.1 32
PDB header:translation
Chain: A: PDB Molecule:mrna export factor mex67;
PDBTitle: nmr structure of the mex67 uba domain
30d1mwca_



not modelled 12.1 11
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
31d1ha7a_



not modelled 11.8 11
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
32d1cpca_



not modelled 11.6 5
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
33d1slma1



not modelled 11.5 11
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
34d1jboa_



not modelled 11.5 11
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
35d1cb8a1



not modelled 11.5 11
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Hyaluronate lyase-like catalytic, N-terminal domain
36d1ug3a2



not modelled 11.0 11
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
37d1doab_



not modelled 10.8 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
38c1zroB_



not modelled 10.4 17
PDB header:cell invasion
Chain: B: PDB Molecule:erythrocyte binding antigen region ii;
PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose
39d2q07a2



not modelled 10.4 21
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:AF0587 domain-like
40c2kdtA_



not modelled 10.3 25
PDB header:protein transport
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain structure in dpc
41d1f1sa1



not modelled 10.3 18
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Hyaluronate lyase-like catalytic, N-terminal domain
42c2ke3A_



not modelled 10.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain in chaps
43d1s29a_



not modelled 10.2 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
44d2cqka1



not modelled 10.1 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
45c3ctvA_



not modelled 10.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of central domain of 3-hydroxyacyl-coa2 dehydrogenase from archaeoglobus fulgidus
46d1outb_



not modelled 9.5 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
47d1i3da_



not modelled 9.5 15
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
48c2m5wA_



not modelled 9.4 20
PDB header:rna binding protein
Chain: A: PDB Molecule:lupus la protein;
PDBTitle: nmr solution structure of the la motif (n-terminal domain, ntd) of2 dictyostelium discoideum la protein
49c2dnnA_



not modelled 9.1 11
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 12;
PDBTitle: solution structure of rna binding domain in rna-binding2 protein 12
50c1bm4A_



not modelled 8.9 23
PDB header:viral protein
Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid);
PDBTitle: momlv capsid protein major homology region peptide analog
51c4j5tA_



not modelled 8.8 40
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide glucosidase;
PDBTitle: crystal structure of processing alpha-glucosidase i
52d1jroa1



not modelled 8.7 16
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
53c4lrvL_



not modelled 8.6 32
PDB header:dna binding protein
Chain: L: PDB Molecule:dna sulfur modification protein dnde;
PDBTitle: crystal structure of dnde from escherichia coli b7a involved in dna2 phosphorothioation modification
54d1dq3a2



not modelled 8.3 24
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:PI-Pfui intein middle domain
55c2j96B_



not modelled 8.3 11
PDB header:photosynthesis
Chain: B: PDB Molecule:phycoerythrocyanin alpha chain;
PDBTitle: the e-configuration of alfa-phycoerythrocyanin
56c1l2aD_



not modelled 8.2 16
PDB header:hydrolase
Chain: D: PDB Molecule:cellobiohydrolase;
PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
57d1l1ya_



not modelled 8.2 16
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
58d1zh5a1



not modelled 8.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
59d1k3pa_



not modelled 8.1 21
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
60c3tweA_



not modelled 8.0 19
PDB header:unknown function
Chain: A: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
61c1t3qD_



not modelled 7.8 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
62d1r2za1



not modelled 7.8 43
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
63c1rm6F_



not modelled 7.8 17
PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
64c3tweB_



not modelled 7.7 19
PDB header:unknown function
Chain: B: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
65d2vkea1



not modelled 7.7 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
66c2l9vA_



not modelled 7.7 21
PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a;
PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state
67c1x1jA_



not modelled 7.6 18
PDB header:lyase
Chain: A: PDB Molecule:xanthan lyase;
PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate.
68d1csha_



not modelled 7.5 15
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
69d1t56a1



not modelled 7.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
70c2xv9A_



not modelled 7.4 8
PDB header:lipid binding protein
Chain: A: PDB Molecule:aba-1a1 repeat unit;
PDBTitle: the solution structure of aba-1a saturated with oleic acid
71c2lz4B_



not modelled 7.4 44
PDB header:membrane protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
72c2lz4A_



not modelled 7.4 44
PDB header:membrane protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
73c2ec5B_



not modelled 7.4 20
PDB header:toxin
Chain: B: PDB Molecule:dermonecrotic toxin;
PDBTitle: crystal structures reveal a thiol-protease like catalytic triad in the2 c-terminal region of pasteurella multocida toxin
74d1xeqa1



not modelled 7.2 42
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:N-terminal, RNA-binding domain of nonstructural protein NS1
75d1ee8a1



not modelled 7.1 36
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
76d1ffva1



not modelled 7.0 7
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
77c4j15A_



not modelled 7.0 24
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex
78d1k3ra2



not modelled 7.0 20
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
79c4il3B_



not modelled 6.9 13
PDB header:hydrolase
Chain: B: PDB Molecule:ste24p;
PDBTitle: crystal structure of s. mikatae ste24p
80d1utga_



not modelled 6.8 21
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
81d1fhjb_



not modelled 6.8 16
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
82c2ks1A_



not modelled 6.8 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
83c2jwaA_



not modelled 6.8 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
84c2h12C_



not modelled 6.7 17
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: structure of acetobacter aceti citrate synthase complexed2 with oxaloacetate and carboxymethyldethia coenzyme a (cmx)
85c3zvrA_



not modelled 6.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of dynamin
86c3hrdH_



not modelled 6.7 20
PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
87c2cazB_



not modelled 6.7 15
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein
PDBTitle: escrt-i core
88d2cazb1



not modelled 6.7 15
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
89c2db1A_



not modelled 6.6 9
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein f;
PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein f homolog
90c4afiB_



not modelled 6.4 10
PDB header:endocytosis
Chain: B: PDB Molecule:ap-3 complex subunit delta-1, vesicle-associated membrane
PDBTitle: complex between vamp7 longin domain and fragment of delta-2 adaptin from ap3
91c2hglA_



not modelled 6.4 9
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein f;
PDBTitle: nmr structure of the first qrrm domain of human hnrnp f
92d1hdsb_



not modelled 6.4 8
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
93d1n9wa2



not modelled 6.4 18
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
94d2o7ta1



not modelled 6.3 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
95d1vi0a2



not modelled 6.3 19
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
96c2mfrA_



not modelled 6.3 32
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
97d3cx5d2



not modelled 6.2 14
Fold:Single transmembrane helix
Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
98c2dgwA_



not modelled 6.2 16
PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 19;
PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
99c4bh6P_



not modelled 6.2 41
PDB header:cell cycle
Chain: P: PDB Molecule:apc/c-cdh1 modulator 1;
PDBTitle: insights into degron recognition by apc coactivators from2 the structure of an acm1-cdh1 complex

Binding site prediction 

The confidence in the top model (c2dmwA_ 41.2% confidence) was considered too low (<90%) for submission to 3DLigandSite

You may manually submit your model to 3DLigandSite, but please be aware that results may be misleading

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below