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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1x1jA_

Fold library idPDB HeaderMoleculeTitle
c1x1jA_PDB header: lyaseChain: A: PDB Molecule: xanthan lyase;PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate.


Added to library: Tue Mar 16 12:41:45 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNA
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Known secondary structure (DSSP)



TT

TTSTT



TT
S
S
GGG

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLL
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Known secondary structure (DSSP) STT
TTTT
TSSTTS
TTSS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence YDDISAARMATYMDTIDYFTPSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGD
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Known secondary structure (DSSP) GGG


SS



T
TTSTTSSS

SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GFYADGSFVQHTTFAYTGGYGSSVLETTANLMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDM
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Known secondary structure (DSSP)
TTS
TTT
TTTTTSTT



GGGGTTGGGTT
GG
 .........290.........300.........310.........320.........330.........340.........350
Sequence VRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFKQIAKRVIQEDTFSSFYGDVSTDTIRLAKAI
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Known secondary structure (DSSP) GSGGGGG
GGG
TT

TT

SS
GGGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VDDPSIAPAAAPNLYKQYAAMDRAVLQRPGFALGLALYSTRISSYESINSENGRGWYTGAGATYLYNQDL
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Known secondary structure (DSSP) T
TT







GGGTTT


SSS
S



TTB
TT
TTTTSS
S
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence AQYSEDYWPTVDAYRIPGTTVASGTPIASGTGTSSWTGGVSLAGQYGASGMDLSYGAYNLSARKSWFMFD
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Known secondary structure (DSSP) TTTSSS
TTTS
TT

TT
TT



SS

S


TTT
SSS


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DEIVALGSGISSTAGIPIETVVDNRKLNGAGDNAWTANGAALSTGLGVAQTLTGVNWVHLAGNTADGSDI
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Known secondary structure (DSSP) S


S
S

TT



TT



TT

SSSSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence GYYFPGGATLQTKREARTGTWKQINNRPATPSTAVTRNYETMWIDHGTNPSGASYGYVLLPNKTSAQVGA
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Known secondary structure (DSSP)
GGGTB

TTS



S
SST

 .........640.........650.........660.........670.........680.........690.........700
Sequence YAADPAIEIVVNTSGVQSVKEKTLGLVGANFWTDTTQTADLITSNKKASVMTREIADERLEASVSDPTQA
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Known secondary structure (DSSP) S
SSSSTTTT
SSS
TTSSSTTT
TTS
 .........710.........720.........730.........740.........750..
Sequence NNGTIAIELARSAEGYSADPGITVTQLAPTIKFTVNVNGAKGKSFHASFQLG
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Known secondary structure (DSSP)
SSSS

TT
SSS
TT
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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