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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2018 Sep 22

Fold library idPDB HeaderMoleculeTitle
c5zfqA_ 2.60 transport protein Chain: A: twitching motility pilus retraction protein;
c6af0C_ 2.88 transcription Chain: C: cdc73 protein;
c6a2vD_ 2.59 structural protein Chain: D: type vi secretion system tube protein hcp;
c6eeiA_ 1.99 lyase Chain: A: tyrosine decarboxylase 1;
c6dzkN_ 3.60 ribosome Chain: N: 30s ribosomal protein s14;
c6bkkD_ 2.00 membrane protein Chain: D: matrix protein 2;
c5ydcA_ 1.91 transcription regulator Chain: A: uncharacterized hth-type transcriptional regulator rv1828;
c6mbgA_ 1.85 lyase Chain: A: gphf;
c6drkD_ 3.80 transport protein Chain: D: transient receptor potential cation channel, subfamily m,
c6dmxJ_ 2.80 transcription Chain: J: bzip factor;
c6dslB_ UNK splicing Chain: B: consensus engineered intein catc;
c5z58p_ 4.90 splicing Chain: P: spliceosome-associated protein cwc15 homolog;
c6eewC_ 2.05 lyase Chain: C: aromatic-l-amino-acid decarboxylase;
c6g04A_ UNK transport protein Chain: A: pre-rrna-processing protein tsr2;
c6cw3G_ 1.98 gene regulation Chain: G: transcriptional adapter 2;
c6bocD_ 2.25 membrane protein Chain: D: matrix protein 2;
c5v5uA_ 2.28 transcription Chain: A: conserved domain protein;
c6bmzP_ 2.63 membrane protein Chain: P: matrix protein 2;
c6e3yP_ 3.30 signaling protein Chain: P: calcitonin gene-related peptide 1;
c5yevB_ 2.50 apoptosis Chain: B: tnfrsf25 death domain;
c6fjhB_ 3.15 flavoprotein Chain: B: lkce;
c5zyuA_ 1.75 dna binding protein/dna Chain: A: mitochondrial genome maintenance exonuclease 1;
c6bklD_ 2.00 membrane protein Chain: D: matrix protein 2;
c5yeeA_ 1.81 structural protein Chain: A: uncharacterized protein;
c6bapC_ 2.65 signaling protein Chain: C: photoreceptor-histidine kinase bphp;
c6dmxF_ 2.80 transcription Chain: F: transcriptional activator myb;
c6bklG_ 2.00 membrane protein Chain: G: matrix protein 2;
c6gcvB_ 1.30 signaling protein Chain: B: chemotaxis transducer;
c6bkkB_ 2.00 membrane protein Chain: B: matrix protein 2;
c6dtqC_ 2.15 sugar binding protein Chain: C: maltose-binding protein male3;
c5yq8D_ 2.25 hydrolase Chain: D: dna-damage inducible protein ddi1-like protein;
c5yscA_ 1.67 transport protein Chain: A: vitamin b12-binding protein;
c5zjnB_ 2.66 isomerase Chain: B: putative n-acetylmannosamine-6-phosphate 2-epimerase;
c6dhxC_ 1.75 antitoxin Chain: C: tipc2;
c6mdyC_ 2.55 hydrolase Chain: C: 2-dehydro-3-deoxyphosphooctonate aldolase;
c6c48C_ 2.32 cell cycle/dna binding Chain: C: myb-related protein b;
c6czhB_ 1.80 de novo protein Chain: B: mfap0;
c6eemB_ 2.61 lyase Chain: B: tyrosine/dopa decarboxylase;
c6mc8A_ 2.50 dna binding protein Chain: A: dna repair protein ppra;
c6melB_ 2.06 ligase Chain: B: succinate--coa ligase [adp-forming] subunit beta;
c6bocC_ 2.25 membrane protein Chain: C: matrix protein 2;
c5z3mB_ 2.60 hydrolase Chain: B: phosphotyrosine protein phosphatase;
c6dmxA_ 2.80 transcription Chain: A: transcriptional activator myb;
c5z58v_ 4.90 splicing Chain: V: pre-mrna-splicing factor cwc22 homolog;
c6bocA_ 2.25 membrane protein Chain: A: matrix protein 2;
c6bmzO_ 2.63 membrane protein Chain: O: matrix protein 2;
c6bmzK_ 2.63 membrane protein Chain: K: matrix protein 2;
c6melA_ 2.06 ligase Chain: A: succinate--coa ligase subunit alpha;
c6bmzC_ 2.63 membrane protein Chain: C: matrix protein 2;
c6bkkC_ 2.00 membrane protein Chain: C: matrix protein 2;
c6e1kA_ 3.30 membrane protein Chain: A: two pore calcium channel protein 1;
c5zi7A_ 1.86 hydrolase Chain: A: aminopeptidase n;
c6bk9A_ 3.00 signaling protein Chain: A: visual arrestin;
c6bklE_ 2.00 membrane protein Chain: E: matrix protein 2;
c6dnqC_ 2.35 transcription Chain: C: transcriptional activator myb;
c6bmzD_ 2.63 membrane protein Chain: D: matrix protein 2;
c6bklF_ 2.00 membrane protein Chain: F: matrix protein 2;
c6dzkr_ 3.60 ribosome Chain: R:
c6c48F_ 2.32 cell cycle/dna binding Chain: F: myb-related protein b;
c6mdnF_ 4.40 hydrolase Chain: F: vesicle-fusing atpase;
c6gv7A_ UNK metal binding protein Chain: A: metallothionein;
c5z58u_ 4.90 splicing Chain: U:
c5z58C_ 4.90 splicing Chain: C: 116 kda u5 small nuclear ribonucleoprotein component;
c6af0P_ 2.88 transcription Chain: P: paf1 protein;
c6bklH_ 2.00 membrane protein Chain: H: matrix protein 2;
c6bmzL_ 2.63 membrane protein Chain: L: matrix protein 2;
c6bkkE_ 2.00 membrane protein Chain: E: matrix protein 2;
c6bmzA_ 2.63 membrane protein Chain: A: matrix protein 2;
c6bmzI_ 2.63 membrane protein Chain: I: matrix protein 2;
c5z58x_ 4.90 splicing Chain: X: smad nuclear-interacting protein 1;
c6c48D_ 2.32 cell cycle/dna binding Chain: D: protein lin-9 homolog;
c6dzkB_ 3.60 ribosome Chain: B: conserved domain protein;
c6e3yR_ 3.30 signaling protein Chain: R: calcitonin gene-related peptide type 1 receptor;
c5z582_ 4.90 splicing Chain: 2: splicing factor 3b subunit 2;
c6d0tA_ 1.63 de novo protein Chain: A: bb1;
c5vr5A_ UNK cell invasion Chain: A: thrombospondin-related sporozoite protein (trsp);
c6bmzB_ 2.63 membrane protein Chain: B: matrix protein 2;
c5z58V_ 4.90 splicing Chain: V: pre-mrna-splicing factor cwc22 homolog;
c6gieA_ 2.10 membrane protein Chain: A: 33-36 kda outer membrane protein;
c6dzkY_ 3.60 ribosome Chain: Y: ribosome hibernation promoting factor;
c6dmxE_ 2.80 transcription Chain: E: bzip factor;
c6a69B_ 4.11 structural protein Chain: B: neuroplastin;
c6dnqA_ 2.35 transcription Chain: A: transcriptional activator myb;
c6bkkG_ 2.00 membrane protein Chain: G: matrix protein 2;
c5z581_ 4.90 splicing Chain: 1: splicing factor 3b subunit 1;
c6bkkA_ 2.00 membrane protein Chain: A: matrix protein 2;
c5z58w_ 4.90 splicing Chain: W:
c6czjA_ 2.10 de novo protein Chain: A: b10;
c6g04B_ UNK transport protein Chain: B: 40s ribosomal protein s26-a;
c6bmzG_ 2.63 membrane protein Chain: G: matrix protein 2;
c6e3yE_ 3.30 signaling protein Chain: E: receptor activity-modifying protein 1;
c5z58A_ 4.90 splicing Chain: A: pre-mrna-processing-splicing factor 8;
c6eeqA_ 2.60 lyase Chain: A: 4-hydroxyphenylacetaldehyde synthase;
c5zknA_ 2.21 isomerase Chain: A: putative n-acetylmannosamine-6-phosphate 2-epimerase;
c6bmzN_ 2.63 membrane protein Chain: N: matrix protein 2;
c6c48E_ 2.32 cell cycle/dna binding Chain: E: protein lin-52 homolog;
c6gg2A_ 2.60 oxidoreductase Chain: A: amino acid oxidase fmpa;
c6ebqB_ 1.95 flavoprotein Chain: B: protein nrdi;
c6dslA_ UNK splicing Chain: A: consensus engineered intein catn;
c6bklA_ 2.00 membrane protein Chain: A: matrix protein 2;
c6bmzH_ 2.63 membrane protein Chain: H: matrix protein 2;
c6bkkF_ 2.00 membrane protein Chain: F: matrix protein 2;
c6grvA_ UNK metal binding protein Chain: A: metallothionein;
c6dt1E_ 2.75 ligase/dna Chain: E: dna ligase;
c6dmxC_ 2.80 transcription Chain: C: transcriptional activator myb;
c6bmzJ_ 2.63 membrane protein Chain: J: matrix protein 2;
c5z58L_ 4.90 splicing Chain: L: cell division cycle 5-like protein;
c5z58X_ 4.90 splicing Chain: X: smad nuclear-interacting protein 1;
c6m8oA_ 2.50 signaling protein Chain: A: dna-binding response regulator;
c6bkkH_ 2.00 membrane protein Chain: H: matrix protein 2;
c6cw3F_ 1.98 gene regulation Chain: F: histone acetyltransferase gcn5;
c5ybxA_ 2.50 dna binding protein Chain: A: bouquet formation protein 4;
c6dnqE_ 2.35 transcription Chain: E: bzip factor;
c6af0A_ 2.88 transcription Chain: A: ctr9 protein;
c6dmxH_ 2.80 transcription Chain: H: transcriptional activator myb;
c6bklB_ 2.00 membrane protein Chain: B: matrix protein 2;
c6bmzM_ 2.63 membrane protein Chain: M: matrix protein 2;
c6a69A_ 4.11 structural protein Chain: A: plasma membrane calcium-transporting atpase 1;
c6cw2D_ 2.67 gene regulation Chain: D: histone acetyltransferase gcn5;
c6bmzF_ 2.63 membrane protein Chain: F: matrix protein 2;
c6bocB_ 2.25 membrane protein Chain: B: matrix protein 2;
c6bmzE_ 2.63 membrane protein Chain: E: matrix protein 2;
c6bklC_ 2.00 membrane protein Chain: C: matrix protein 2;


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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