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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5z581_

Fold library idPDB HeaderMoleculeTitle
c5z581_4.90PDB header: splicingChain: 1: PDB Molecule: splicing factor 3b subunit 1;


Added to library: Sat Sep 22 08:54:48 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PGYHAPVADPFAEHRPPKIADREDEYKKHRRTMIISAEKAKAGELKVVNGAAASDQTPGATPKKLSSWDQ
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Known secondary structure (DSSP)
TT


TTTSS




TTGGGGGG




GGGT



TTTTGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence AETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSAETPRTDRGGDSIGETPTPGASKRKERNRPL
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Known secondary structure (DSSP) TT


SSS
TTTT

T

TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence SDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEMKSVNDQPSGNLPFLKPDDI
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Known secondary structure (DSSP)
S
SS




S
SSTTSSS


















SS





TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QYFDKLLVDVDESEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLED
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Known secondary structure (DSSP) S





TTSS
T
T
TT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence QERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPD
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Known secondary structure (DSSP) TT
SGGGGGGS
S
S
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence IDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSL
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Known secondary structure (DSSP) SS
SS
TT

S
GGGGGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence VEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
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Known secondary structure (DSSP) GGGTT
SSSTTTS
GGGGGGG

SGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALD
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Known secondary structure (DSSP) S
TTGGG
S
T
TTS
TTSSTTTTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence RRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGI
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Known secondary structure (DSSP) S
GGGGG
S
T
GGG

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence LYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQ
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Known secondary structure (DSSP)

SS

GGGGGGGSSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCI
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Known secondary structure (DSSP)
TT
S
TTS
STT
SS
GGGGG

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence DLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
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Known secondary structure (DSSP) TT
SSS
GGGGG
SS
T



SST
 .........850.........860.........870.........880.........890.........900.........910
Sequence QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
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Known secondary structure (DSSP) TTSS
T
SS
GGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRM
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Known secondary structure (DSSP) S
SSTTTSS
GGGG




 .........990.........1000.........1010.........1020.........1030........
Sequence LQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
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Known secondary structure (DSSP) TTTSS
SSTTTTTTGGGS





SS




GGGG



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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