Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A0F8
DateTue Jul 17 17:05:05 BST 2012
Unique Job ID1cbfe3e934ec482d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2gycj1
Top template information
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
Confidence and coverage
Confidence:100.0% Coverage: 96%
140 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKLHELKPAEGSRKERNRVGRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRR
Secondary structure 
SS confidence 
Disorder  ?????????????????????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LPKRGFTNINRKEYAIVNLDQLNKFEDGTEVTPALLVESGVVKNEKSGIKILGNGSLDKK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140......
Sequence  LTVKAHKFSASAAEAIDAKGGAHEVI
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gyc chain J domain 1

3D model

Region: 4 - 144
Aligned: 140
Modelled: 141
Confidence: 100.0%
Identity: 46%
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Family: Ribosomal proteins L15p and L18e

Phyre2

PDB 2zjr chain I domain 1

3D model

Region: 4 - 146
Aligned: 140
Modelled: 143
Confidence: 100.0%
Identity: 46%
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Family: Ribosomal proteins L15p and L18e

Phyre2

PDB 3bbo chain N

3D model

Region: 1 - 146
Aligned: 146
Modelled: 146
Confidence: 100.0%
Identity: 47%
PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein l15;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome

Phyre2

PDB 2j01 chain P domain 1

3D model

Region: 5 - 146
Aligned: 138
Modelled: 142
Confidence: 100.0%
Identity: 51%
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Family: Ribosomal proteins L15p and L18e

Phyre2

PDB 1vqo chain L domain 1

3D model

Region: 12 - 146
Aligned: 129
Modelled: 135
Confidence: 100.0%
Identity: 26%
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Family: Ribosomal proteins L15p and L18e

Phyre2

PDB 4a1c chain K

3D model

Region: 12 - 146
Aligned: 130
Modelled: 135
Confidence: 100.0%
Identity: 29%
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l27a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.

Phyre2

PDB 1s1i chain V

3D model

Region: 15 - 146
Aligned: 132
Modelled: 132
Confidence: 100.0%
Identity: 27%
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l28;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Phyre2

PDB 2zkr chain L

3D model

Region: 15 - 146
Aligned: 120
Modelled: 132
Confidence: 100.0%
Identity: 27%
PDB header:ribosomal protein/rna
Chain: L: PDB Molecule:rna expansion segment es20;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map

Phyre2

PDB 3iz5 chain O

3D model

Region: 12 - 146
Aligned: 126
Modelled: 135
Confidence: 100.0%
Identity: 31%
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l27a (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Phyre2

PDB 1vqo chain O domain 1

3D model

Region: 69 - 145
Aligned: 64
Modelled: 77
Confidence: 99.0%
Identity: 39%
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Family: Ribosomal proteins L15p and L18e

Phyre2

PDB 3iz5 chain R

3D model

Region: 69 - 143
Aligned: 62
Modelled: 75
Confidence: 98.6%
Identity: 18%
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Phyre2

PDB 2zkr chain O

3D model

Region: 69 - 143
Aligned: 61
Modelled: 61
Confidence: 98.5%
Identity: 21%
PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map

Phyre2

PDB 4a1a chain N

3D model

Region: 68 - 143
Aligned: 66
Modelled: 76
Confidence: 98.3%
Identity: 29%
PDB header:ribosome
Chain: N: PDB Molecule:rpl18;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.

Phyre2

PDB 3izc chain R

3D model

Region: 69 - 143
Aligned: 61
Modelled: 61
Confidence: 98.3%
Identity: 18%
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Phyre2

PDB 1s1i chain O

3D model

Region: 110 - 143
Aligned: 34
Modelled: 34
Confidence: 97.3%
Identity: 29%
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Phyre2

PDB 2qn6 chain B domain 1

3D model

Region: 130 - 146
Aligned: 17
Modelled: 17
Confidence: 26.1%
Identity: 6%
Fold: Ferredoxin-like
Superfamily: eIF-2-alpha, C-terminal domain
Family: eIF-2-alpha, C-terminal domain

Phyre2

PDB 2zjq chain 5

3D model

Region: 130 - 145
Aligned: 16
Modelled: 16
Confidence: 12.9%
Identity: 19%
PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit

Phyre2

PDB 2zjq chain 5 domain 1

3D model

Region: 130 - 145
Aligned: 16
Modelled: 16
Confidence: 12.9%
Identity: 19%
Fold: ClpS-like
Superfamily: ClpS-like
Family: Ribosomal protein L7/12, C-terminal domain

Phyre2

PDB 1dd3 chain A domain 2

3D model

Region: 130 - 145
Aligned: 16
Modelled: 16
Confidence: 12.6%
Identity: 13%
Fold: ClpS-like
Superfamily: ClpS-like
Family: Ribosomal protein L7/12, C-terminal domain

Phyre2

PDB 1ctf chain A

3D model

Region: 130 - 145
Aligned: 16
Modelled: 16
Confidence: 12.3%
Identity: 25%
Fold: ClpS-like
Superfamily: ClpS-like
Family: Ribosomal protein L7/12, C-terminal domain

Phyre2
1
d2gycj1
2
d2zjri1
3
c3bboN_
4
d2j01p1
5
d1vqol1
6
c4a1cK_
7
c1s1iV_
8
c2zkrl_
9
c3iz5O_
10
d1vqoo1
11
c3iz5R_
12
c2zkro_
13
c4a1aN_
14
c3izcR_
15
c1s1iO_
16
d2qn6b1
17
c2zjq5_
18
d2zjq51
19
d1dd3a2
20
d1ctfa_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gycj1
100.0 46 Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
2d2zjri1
100.0 46 Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
3c3bboN_
100.0 47 PDB header:ribosome
Chain: N: PDB Molecule:ribosomal protein l15;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
4d2j01p1
100.0 51 Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
5d1vqol1
100.0 26 Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
6c4a1cK_
100.0 29 PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l27a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
7c1s1iV_
100.0 27 PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l28;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
8c2zkrl_
100.0 27 PDB header:ribosomal protein/rna
Chain: L: PDB Molecule:rna expansion segment es20;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
9c3iz5O_
100.0 31 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l27a (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
10d1vqoo1
99.0 39 Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
11c3iz5R_
98.6 18 PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
12c2zkro_
98.5 21 PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
13c4a1aN_
98.3 29 PDB header:ribosome
Chain: N: PDB Molecule:rpl18;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
14c3izcR_
98.3 18 PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
15c1s1iO_
97.3 29 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
16d2qn6b1
26.1 6 Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
17c2zjq5_
12.9 19 PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit
18d2zjq51
12.9 19 Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
19d1dd3a2
12.6 13 Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
20d1ctfa_
12.3 25 Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
21d1a9xa3
not modelled 12.2 20 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
22c2qyfD_
not modelled 12.0 26 PDB header:cell cycle
Chain: D: PDB Molecule:mad2l1-binding protein;
PDBTitle: crystal structure of the mad2/p31(comet)/mad2-binding2 peptide ternary complex
23d1q8ka2
not modelled 12.0 35 Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
24c2jo4C_
not modelled 11.8 39 PDB header:de novo protein
Chain: C: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
25c2jo4A_
not modelled 11.8 39 PDB header:de novo protein
Chain: A: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
26c2jo4B_
not modelled 11.8 39 PDB header:de novo protein
Chain: B: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
27c2jo4D_
not modelled 11.8 39 PDB header:de novo protein
Chain: D: PDB Molecule:kia7;
PDBTitle: tetrameric structure of kia7 peptide
28c2jo5C_
not modelled 11.6 39 PDB header:de novo protein
Chain: C: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
29c2jo5D_
not modelled 11.6 39 PDB header:de novo protein
Chain: D: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
30c2jo5B_
not modelled 11.6 39 PDB header:de novo protein
Chain: B: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
31c2jo5A_
not modelled 11.6 39 PDB header:de novo protein
Chain: A: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
32c1giyJ_
not modelled 11.0 13 PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix
33c2gya3_
not modelled 10.9 25 PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056
34d1nlna_
not modelled 8.5 40 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
35c2ftcF_
not modelled 8.1 25 PDB header:ribosome
Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
36c3jywD_
not modelled 6.4 16 PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l4(b);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
37d1fe0a_
not modelled 6.4 10 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
38d2zjrc1
not modelled 5.7 26 Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
39d2gycc1
not modelled 5.7 26 Fold:Ribosomal protein L4
Superfamily:Ribosomal protein L4
Family:Ribosomal protein L4
40c2jz2A_
not modelled 5.5 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
41c4dnhA_
not modelled 5.3 43 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein smc04132 from sinorhizobium2 meliloti 1021
42d1a9xa4
not modelled 5.2 16 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite