Email l.a.kelley@imperial.ac.uk Description P27862 Date Thu Jan 5 11:44:25 GMT 2012 Unique Job ID fc7015bb594b735c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vi7A_ 100.0 100 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 2 c2cveA_ 100.0 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 3 d1vi7a1 100.0 100 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 4 d2cvea1 100.0 45 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 5 d1vi7a2 99.0 100 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 6 c2xexA_ 97.6 10 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 7 c2bm0A_ 97.6 14 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 8 c3b8hA_ 97.6 14 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 9 c2dy1A_ 97.5 12 PDB header:signaling protein, translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of ef-g-2 from thermus thermophilus 10 c2rdo7_ 97.5 11 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 11 c1zn0B_ 97.0 14 PDB header:translation/biosynthetic protein/rna Chain: B: PDB Molecule:elongation factor g; PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf 12 d2dy1a5 97.0 15 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 13 d1n0ua5 96.9 18 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 14 d2bv3a5 96.9 13 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 15 c2ywfA_ 96.7 22 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 16 d2cvea2 96.4 19 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 17 c3cb4D_ 96.3 26 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 18 c3degC_ 96.3 26 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 19 c2kdoA_ 95.6 11 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 20 d1p9qc3 95.5 10 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 21 c1t95A_ not modelled 95.0 9 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 22 d1t95a3 not modelled 94.5 11 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 23 c2wbmA_ not modelled 93.5 18 PDB header:rna-binding protein Chain: A: PDB Molecule:ribosome maturation protein sdo1 homolog; PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus 24 c1jqsC_ not modelled 93.5 13 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 25 d1lrza2 not modelled 57.4 17 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 26 d1kona_ not modelled 52.9 5 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 27 d1mw7a_ not modelled 47.9 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 28 d1lfpa_ not modelled 35.2 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 29 c2p5xB_ not modelled 35.1 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 30 d1tzfa_ not modelled 25.1 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 31 d1ex2a_ not modelled 22.6 19 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 32 d2cz4a1 not modelled 20.7 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 33 d2c71a1 not modelled 20.5 27 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 34 d1v4aa1 not modelled 19.3 50 Fold:Four-helical up-and-down bundle Superfamily:Nucleotidyltransferase substrate binding subunit/domain Family:Glutamine synthase adenylyltransferase GlnE, domain 2 35 c3polA_ not modelled 17.6 21 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 36 c3okrA_ not modelled 16.5 29 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 37 c3t18D_ not modelled 16.2 10 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 38 c3q3jA_ not modelled 15.3 22 PDB header:membrane protein/protein binding Chain: A: PDB Molecule:plexin-a2; PDBTitle: crystal structure of plexin a2 rbd in complex with rnd1 39 d2f1fa2 not modelled 15.3 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 40 c2qs0A_ not modelled 14.2 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 41 d1vh3a_ not modelled 14.0 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 42 d2amha1 not modelled 13.0 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 43 c2vshB_ not modelled 12.1 21 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 44 d2fgca1 not modelled 12.1 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 45 d1qwja_ not modelled 11.7 27 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 46 d1vh1a_ not modelled 11.1 29 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 47 c3e3xA_ not modelled 11.1 17 PDB header:hydrolase Chain: A: PDB Molecule:bipa; PDBTitle: the c-terminal part of bipa protein from vibrio parahaemolyticus rimd2 2210633 48 d1vgwa_ not modelled 10.9 27 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 49 c3lkwA_ not modelled 10.8 45 PDB header:viral protein,hydrolase Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active2 site mutant 50 c2kr6A_ not modelled 10.7 36 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 51 d1v3aa_ not modelled 10.7 20 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 52 d1rxda_ not modelled 9.9 18 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 53 d2ijob1 not modelled 9.9 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 54 c2np3A_ not modelled 9.8 43 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family regulator; PDBTitle: crystal structure of tetr-family regulator (sco0857) from streptomyces2 coelicolor a3. 55 c2exeA_ not modelled 9.7 8 PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase clk3; PDBTitle: crystal structure of the phosphorylated clk3 56 d2fomb1 not modelled 9.6 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 57 c3e90B_ not modelled 9.4 45 PDB header:hydrolase Chain: B: PDB Molecule:ns3 protease; PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h 58 d1t4lb_ not modelled 8.9 39 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 59 d1befa_ not modelled 8.8 36 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 60 d1ny1a_ not modelled 8.5 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 61 d1t4oa_ not modelled 8.3 38 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 62 c1t4oA_ not modelled 8.3 38 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 63 d2fp7b1 not modelled 8.0 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 64 d1pnoa_ not modelled 7.9 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 65 c2gv1A_ not modelled 7.7 8 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli 66 c2w3zA_ not modelled 7.6 21 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 67 c1up6F_ not modelled 7.6 26 PDB header:hydrolase Chain: F: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate 68 d1eyra_ not modelled 7.4 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 69 c1l2yA_ not modelled 7.4 56 PDB header:de novo protein Chain: A: PDB Molecule:tc5b; PDBTitle: nmr structure of trp-cage miniprotein construct tc5b 70 c3b4oB_ not modelled 7.4 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 71 c2wv9A_ not modelled 7.3 41 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 72 d1jo0a_ not modelled 7.2 14 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 73 c2hfuB_ not modelled 7.2 17 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 74 d1d4oa_ not modelled 6.9 27 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 75 c2kduB_ not modelled 6.8 25 PDB header:metal binding protein/exocytosis Chain: B: PDB Molecule:protein unc-13 homolog a; PDBTitle: structural basis of the munc13-1/ca2+-calmodulin2 interaction: a novel 1-26 calmodulin binding motif with a3 bipartite binding mode 76 c3oamD_ not modelled 6.8 33 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 77 c2jphA_ not modelled 6.7 25 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:plexin-b1; PDBTitle: nmr solution structure of the rho gtpase binding domain of2 human plexin-b1 78 c2jofA_ not modelled 6.6 56 PDB header:de novo protein Chain: A: PDB Molecule:trp-cage; PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein 79 d1tmka_ not modelled 6.4 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 80 d2pc6a1 not modelled 6.4 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 81 c1s6yA_ not modelled 6.4 30 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 82 c1v4aA_ not modelled 6.3 50 PDB header:transferase Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase; PDBTitle: structure of the n-terminal domain of escherichia coli2 glutamine synthetase adenylyltransferase 83 d1vm6a2 not modelled 6.3 80 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 84 d1f61a_ not modelled 6.3 50 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 85 d1h7ea_ not modelled 6.2 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 86 c1uv7A_ not modelled 6.2 14 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 87 d1uv7a_ not modelled 6.2 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 88 c3k7dA_ not modelled 6.1 30 PDB header:transferase Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase; PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase 89 c2vbcA_ not modelled 6.0 36 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 90 d1w55a1 not modelled 5.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 91 c2ux8G_ not modelled 5.8 14 PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. 92 c2xwlB_ not modelled 5.8 39 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 93 c2bruC_ not modelled 5.8 33 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 94 c3rz2B_ not modelled 5.7 16 PDB header:hydrolase Chain: B: PDB Molecule:protein tyrosine phosphatase type iva 1; PDBTitle: crystal of prl-1 complexed with peptide 95 d2ieca1 not modelled 5.7 57 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 96 c3pnnA_ not modelled 5.6 20 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 97 d2f06a1 not modelled 5.6 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 98 c3okrC_ not modelled 5.5 35 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 99 d1diha2 not modelled 5.5 80 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like