Secondary structure and disorder prediction

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Sequence		M	S	D	E	A	D	E	A	Y	S	V	T	E	Q	L	T	M	T	G	I	N	R	I	R	Q	K	I	N	A	H	G	I	P	V	Y	L	C	E	A	C	G	N	P	I	P	E	A	R	R	K	I	F	P	G	V	T	L	C	V	E
Secondary structure
SS confidence
Disorder		?	?	?																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.
Sequence		C	Q	A	Y	Q	E	R	Q	R	K	H	Y	A
Secondary structure
SS confidence
Disorder										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tjl chain D Region: 2 - 73 Aligned: 70 Modelled: 72 Confidence: 99.8% Identity: 27% PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli Phyre2 PDB 2kgo chain A Region: 6 - 73 Aligned: 67 Modelled: 68 Confidence: 99.8% Identity: 36% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 Phyre2 PDB 2kq9 chain A Region: 13 - 64 Aligned: 50 Modelled: 52 Confidence: 99.6% Identity: 32% PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 Phyre2 PDB 1tjl chain A domain 2 Region: 34 - 73 Aligned: 40 Modelled: 40 Confidence: 99.6% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Prokaryotic DksA/TraR C4-type zinc finger Phyre2 PDB 2gvi chain A Region: 37 - 63 Aligned: 27 Modelled: 27 Confidence: 76.3% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution Phyre2 PDB 1tjl chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 72.4% Identity: 20% Fold: Long alpha-hairpin Superfamily: DnaK suppressor protein DksA, alpha-hairpin domain Family: DnaK suppressor protein DksA, alpha-hairpin domain Phyre2 PDB 3mhs chain E Region: 34 - 44 Aligned: 11 Modelled: 11 Confidence: 67.8% Identity: 45% PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde Phyre2 PDB 2b0o chain F Region: 16 - 73 Aligned: 52 Modelled: 58 Confidence: 67.0% Identity: 19% PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain Phyre2 PDB 2owa chain B Region: 18 - 73 Aligned: 55 Modelled: 56 Confidence: 66.5% Identity: 15% PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) Phyre2 PDB 2p57 chain A Region: 19 - 73 Aligned: 53 Modelled: 55 Confidence: 66.3% Identity: 25% PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein Phyre2 PDB 3jue chain A Region: 32 - 73 Aligned: 41 Modelled: 42 Confidence: 64.5% Identity: 29% PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 Phyre2 PDB 3d00 chain A Region: 37 - 62 Aligned: 20 Modelled: 26 Confidence: 59.6% Identity: 40% PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution Phyre2 PDB 3lvr chain E Region: 32 - 73 Aligned: 41 Modelled: 42 Confidence: 59.3% Identity: 17% PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium Phyre2 PDB 1dcq chain A domain 2 Region: 20 - 73 Aligned: 53 Modelled: 54 Confidence: 54.6% Identity: 21% Fold: ArfGap/RecO-like zinc finger Superfamily: ArfGap/RecO-like zinc finger Family: Pyk2-associated protein beta ARF-GAP domain Phyre2 PDB 1dcq chain A Region: 20 - 73 Aligned: 52 Modelled: 54 Confidence: 48.6% Identity: 21% PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta. Phyre2 PDB 2iqj chain B Region: 21 - 73 Aligned: 44 Modelled: 53 Confidence: 46.4% Identity: 18% PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like Phyre2 PDB 3feh chain A Region: 12 - 65 Aligned: 48 Modelled: 48 Confidence: 43.2% Identity: 21% PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 Phyre2 PDB 1rut chain X domain 1 Region: 33 - 44 Aligned: 12 Modelled: 12 Confidence: 39.3% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 2d9l chain A Region: 21 - 71 Aligned: 49 Modelled: 51 Confidence: 39.0% Identity: 12% PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip Phyre2 PDB 3dwd chain B Region: 21 - 73 Aligned: 51 Modelled: 53 Confidence: 38.3% Identity: 18% PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 Phyre2 1 c1tjlD_ 2 c2kgoA_ 3 c2kq9A_ 4 d1tjla2 5 c2gviA_ 6 d1tjla1 7 c3mhsE_ 8 c2b0oF_ 9 c2owaB_ 10 c2p57A_ 11 c3jueA_ 12 c3d00A_ 13 c3lvrE_ 14 d1dcqa2 15 c1dcqA_ 16 c2iqjB_ 17 c3fehA_ 18 d1rutx1 19 c2d9lA_ 20 c3dwdB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tjlD_ 99.8 27 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 2 c2kgoA_ 99.8 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 3 c2kq9A_ 99.6 32 PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 4 d1tjla2 99.6 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Prokaryotic DksA/TraR C4-type zinc finger 5 c2gviA_ 76.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 6 d1tjla1 72.4 20 Fold:Long alpha-hairpin Superfamily:DnaK suppressor protein DksA, alpha-hairpin domain Family:DnaK suppressor protein DksA, alpha-hairpin domain 7 c3mhsE_ 67.8 45 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 8 c2b0oF_ 67.0 19 PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain 9 c2owaB_ 66.5 15 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 10 c2p57A_ 66.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 11 c3jueA_ 64.5 29 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 12 c3d00A_ 59.6 40 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 13 c3lvrE_ 59.3 17 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 14 d1dcqa2 54.6 21 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain 15 c1dcqA_ 48.6 21 PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta. 16 c2iqjB_ 46.4 18 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 17 c3fehA_ 43.2 21 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 18 d1rutx1 39.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 19 c2d9lA_ 39.0 12 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 20 c3dwdB_ 38.3 18 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 21 c3o47A_ not modelled 32.4 23 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 22 d1j2oa1 not modelled 31.3 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 23 d1rutx3 not modelled 27.9 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 d1wyha1 not modelled 27.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 25 d1x4ka1 not modelled 27.5 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 26 d1xpaa2 not modelled 26.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 27 d2cura1 not modelled 24.9 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 28 d1x3ha1 not modelled 19.1 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 29 c2d8xA_ not modelled 17.9 21 PDB header:structural protein, cell cycle Chain: A: PDB Molecule:protein pinch; PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch) 30 d2cora1 not modelled 16.9 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 31 c2curA_ not modelled 16.4 24 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of skeletal muscle lim-protein 1 32 c2d8zA_ not modelled 16.3 21 PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2) 33 c3na7A_ not modelled 16.3 15 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 34 d2cupa3 not modelled 15.2 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 35 d2dloa1 not modelled 13.3 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 36 c1x4lA_ not modelled 13.1 18 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 37 c2cuqA_ not modelled 12.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2 38 c3f6qB_ not modelled 12.5 28 PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:lim and senescent cell antigen-like-containing PDBTitle: crystal structure of integrin-linked kinase ankyrin repeat2 domain in complex with pinch1 lim1 domain 39 d1twfj_ not modelled 12.3 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 40 d1x4la2 not modelled 12.3 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 41 c1wyhA_ not modelled 12.3 24 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 2; PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2 42 c1d4uA_ not modelled 12.3 20 PDB header:dna binding protein Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies 43 c3h0gL_ not modelled 12.2 36 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 44 d2dara2 not modelled 11.9 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 45 c2darA_ not modelled 11.8 21 PDB header:metal binding protein Chain: A: PDB Molecule:pdz and lim domain protein 5; PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein 46 d1ef4a_ not modelled 11.8 50 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 47 d1m3va1 not modelled 11.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 48 c1j2oA_ not modelled 11.4 23 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of rhombotin-2 and lim domain-binding PDBTitle: structure of flin2, a complex containing the n-terminal lim2 domain of lmo2 and ldb1-lid 49 c2pmzN_ not modelled 11.3 50 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 50 c2ja6L_ not modelled 10.4 23 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 51 c1x63A_ not modelled 10.2 21 PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1 52 c2cu8A_ not modelled 10.2 10 PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: solution structure of the lim domain of human cysteine-rich2 protein 2 53 d1ee8a3 not modelled 9.7 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 54 c2egqA_ not modelled 9.1 18 PDB header:structural protein Chain: A: PDB Molecule:fhl1 protein; PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1 55 c1x61A_ not modelled 9.0 16 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor interacting protein 6; PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6) 56 c1x64A_ not modelled 8.9 14 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 57 c2bzwB_ not modelled 8.7 67 PDB header:transcription Chain: B: PDB Molecule:bcl2-antagonist of cell death; PDBTitle: the crystal structure of bcl-xl in complex with full-length2 bad 58 c1x62A_ not modelled 8.6 25 PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1 59 c1x4kA_ not modelled 8.6 28 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in lim-protein 3 60 c2l4zA_ not modelled 8.3 31 PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82) 61 c3a44D_ not modelled 8.2 20 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 62 c2d8yA_ not modelled 7.9 17 PDB header:structural protein Chain: A: PDB Molecule:eplin protein; PDBTitle: solution structure of the lim domain of epithelial protein2 lost in neoplasm 63 c2o10A_ not modelled 7.7 20 PDB header:metal binding protein Chain: A: PDB Molecule:muscle lim protein; PDBTitle: solution structure of the n-terminal lim domain of mlp/crp3 64 d1u5ka2 not modelled 7.6 33 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like 65 c2iybG_ not modelled 7.4 36 PDB header:metal-binding Chain: G: PDB Molecule:testin; PDBTitle: structure of complex between the 3rd lim domain of tes and2 the evh1 domain of mena 66 c2i5oA_ not modelled 7.4 56 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 67 c1rutX_ not modelled 7.3 33 PDB header:protein binding Chain: X: PDB Molecule:fusion protein of lmo4 protein and lim domain- PDBTitle: complex of lmo4 lim domains 1 and 2 with the ldb1 lid domain 68 d2czra1 not modelled 7.3 27 Fold:Restriction endonuclease-like Superfamily:TBP-interacting protein-like Family:TBP-interacting protein-like 69 d1xx6a2 not modelled 7.3 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 70 c2dloA_ not modelled 7.2 29 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor-interacting protein 6; PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6 71 c1ibiA_ not modelled 6.8 24 PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures 72 c3q8dB_ not modelled 6.7 25 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus 73 c1x68A_ not modelled 6.6 33 PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein 74 c1x3hA_ not modelled 6.6 14 PDB header:metal binding protein Chain: A: PDB Molecule:leupaxin; PDBTitle: solution structure of the lim domain of human leupaxin 75 c2qgpA_ not modelled 6.4 33 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 76 d1v6ga1 not modelled 6.4 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 77 c2ko5A_ not modelled 6.4 40 PDB header:transcription Chain: A: PDB Molecule:ring finger protein z; PDBTitle: nmr solution structure of lfv-z 78 d2ak3a2 not modelled 6.3 20 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 79 d2cuqa1 not modelled 6.2 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 80 c2xjyA_ not modelled 6.2 25 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2; PDBTitle: crystal structure of the lmo2:ldb1-lid complex, p21 crystal2 form 81 d2d8za2 not modelled 6.0 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 82 d1e4va2 not modelled 6.0 10 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 83 c2f9iD_ not modelled 5.9 17 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 84 d1l1ta3 not modelled 5.9 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 85 d1x63a2 not modelled 5.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c1a7iA_ not modelled 5.7 17 PDB header:lim domain containing proteins Chain: A: PDB Molecule:qcrp2 (lim1); PDBTitle: amino-terminal lim domain from quail cysteine and glycine-2 rich protein, nmr, minimized average structure 87 d1bboa1 not modelled 5.6 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 88 d1k3xa3 not modelled 5.6 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 89 d1rzsa_ not modelled 5.6 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 90 c1loiA_ not modelled 5.5 50 PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures 91 c1m3vA_ not modelled 5.5 27 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of the lim interacting domain of ldb1 and PDBTitle: flin4: fusion of the lim binding domain of ldb1 and the n-2 terminal lim domain of lmo4 92 d2d8ua1 not modelled 5.5 33 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 93 c2l3kA_ not modelled 5.4 33 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid) 94 d1k82a3 not modelled 5.3 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 95 c1b8tA_ not modelled 5.3 16 PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1 96 d1wjva2 not modelled 5.2 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger 97 d1zina2 not modelled 5.2 33 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 98 c2jtnA_ not modelled 5.2 19 PDB header:protein binding/transcription Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex 99 d1u5sb1 not modelled 5.1 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0