Phyre 2 alignment of P41065 with c1d4uA_

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Job Description | P41065
Confidence | 12.26% | Date | Thu Jan 5 12:01:22 GMT 2012
Rank | 42 | Aligned Residues | 30
% Identity | 20% | Template | c1d4uA_
PDB info | PDB header:dna binding protein | Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); | PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | I | P | V | Y | L | C | E | A | C | G | N | P | I | P | E | A | R | R | K | I | F | P | G | V | T | L | C | V | E | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | F | D | Y | V | I | C | E | E | C | G | K | E | F | M | D | S | Y | L | M | D | H | F | D | L | P | T | C | D | D | C
Template Known Secondary structure |  |  |  |  |  |  |  | T | T | T |  |  |  |  | S |  | S | S | S | T | T | T | T | S |  |  |  |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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