BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (73 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI           154   7e-37
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    62   7e-09
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    57   2e-07
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...    55   9e-07
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    55   1e-06
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    54   1e-06
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    53   3e-06
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    53   3e-06
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    53   3e-06
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    52   6e-06
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          52   8e-06
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...    51   9e-06
UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...    51   1e-05
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    51   1e-05
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    50   2e-05
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    50   2e-05
UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    49   4e-05
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    49   4e-05
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    49   5e-05
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    49   5e-05
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    49   7e-05
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...    48   8e-05
UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD      48   1e-04
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    47   2e-04
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    47   3e-04
UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc...    45   5e-04
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    45   5e-04
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    45   6e-04
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    45   6e-04
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    45   7e-04
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    45   8e-04
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    45   9e-04
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    45   9e-04
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    45   0.001
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    45   0.001
UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B...    44   0.001
UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=...    44   0.002
UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ...    43   0.003
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    43   0.004
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    43   0.004
UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri...    42   0.005
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    42   0.005
UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.006
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.006
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  42   0.006
UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10...    42   0.008
UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc...    41   0.009
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   41   0.012
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    41   0.013
UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ...    41   0.015
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    40   0.016
UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3...    40   0.017
UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ...    40   0.020
UniRef50_B8GPY8 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.026
UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact...    40   0.028
UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto...    40   0.028
UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba...    39   0.035
UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.037
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    39   0.043
UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono...    39   0.044
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.055
UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo...    39   0.061
UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto...    39   0.061
UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM...    39   0.071

>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE
Sbjct: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60

Query: 61 CQAYQERQRKHYA 73
          CQAYQERQRKHYA
Sbjct: 61 CQAYQERQRKHYA 73


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE +   S    L    I RIRQ++   GI    C+ CG P+P  RR++ PGV  CV 
Sbjct: 1  MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58

Query: 61 CQAYQERQRKHY 72
          CQ  QE Q +HY
Sbjct: 59 CQEVQEIQARHY 70


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59
          MSD AD+A  V EQ LT +  NR +  IN        C+ C + IPEARR+  PGV LCV
Sbjct: 1  MSDIADQAQDVIEQHLTASLANR-KHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCV 59

Query: 60 ECQAYQERQRKH 71
          +C + QE + +H
Sbjct: 60 DCASLQEIKGRH 71


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 11 VTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
          V EQ+  T    INR R  ++        C  CG  IPEARR I PGV LCVECQA ++ 
Sbjct: 11 VQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVELCVECQAKEDA 70

Query: 68 QRKHYA 73
          + K ++
Sbjct: 71 REKAFS 76


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ DEA ++ E+     I R   +I  HG     C  CG PI EARRK  P  T CV+
Sbjct: 1  MTDQLDEAQALEERERDDCIARAAGQIKGHG--ATHCVVCGEPIDEARRKAMPSATRCVD 58

Query: 61 CQAYQERQRKHY 72
          CQ  +ER  + +
Sbjct: 59 CQESRERWSRSH 70


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS++ ++  A + T   T  GIN IR K+++      +CE CG  IP AR+   PGV LC
Sbjct: 1  MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60

Query: 59 VECQAYQERQRKHYA 73
            CQ  +E+Q  H A
Sbjct: 61 AACQDVKEKQDVHRA 75


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A    ++     I+  R +   H +  ++CE C  PIPEARR+  PGV  CV 
Sbjct: 1  MADAMDLAQLREQEDRERHISNARSR--RHEVSAFICEECDAPIPEARRRAIPGVQCCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQEILELKSKHY 70


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D      E+     I++ R +  A     +LCE+C  PIPEARR   PGV LCV 
Sbjct: 1  MADVMDLVQQRVEEERERHIHKARSRQAAPS--RFLCESCNGPIPEARRAALPGVELCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ  +E +  HY
Sbjct: 59 CQEIKELKSLHY 70


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K  A    ++ C  CG PIPE RR+  PGVT C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQNRFK-PATTPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59

Query: 61 CQAYQERQRK 70
          CQA  ER+++
Sbjct: 60 CQAIIERRQR 69


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 1  MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MSD+ D+  A +VT       I  +R++++   + +  CE CG+ I E RR+I PGV LC
Sbjct: 1  MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60

Query: 59 VECQAYQE 66
          V CQ   E
Sbjct: 61 VGCQEVAE 68


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D+ D A     ++  T + R   K +  G+ ++ CE C +PIPEARR   PGV LCV CQ
Sbjct: 2  DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61

Query: 63 AYQER 67
             E+
Sbjct: 62 TRIEQ 66


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 10 SVTEQL---TMTGINRIRQKINAHGI--PVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
          +V EQ+   T   I R+R +    G       CE C  PIPEARR+  PGV LCV+CQ+ 
Sbjct: 10 AVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQSG 69

Query: 65 QER 67
          ++R
Sbjct: 70 RDR 72


>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
          +V EQ+  T    I R R +I   G  +  CE CG PIP+ARR+  PGV LC+ CQ  ++
Sbjct: 10 AVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68

Query: 67 RQRKHY 72
           Q+  Y
Sbjct: 69 LQKPAY 74


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K  +    ++ C  CG PIPE RR+  PG+T C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQSRFKPGS-APSLFHCRVCGKPIPEKRRQTLPGITTCKE 59

Query: 61 CQAYQER 67
          CQ   ER
Sbjct: 60 CQEKLER 66


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
          CE CG+PIPEARR+ +P  T C ECQA  ER  K+
Sbjct: 34 CEDCGDPIPEARRRAYPSATRCTECQARHERHAKN 68


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           LCE CGNPI +AR + FP  TLCVEC+  QER+
Sbjct: 206 LCENCGNPIGKARMQAFPRATLCVECKQKQERR 238


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQK-INAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59
          M D  D A    E L    I + R K I A     ++C +C   IPE RR   PGV  CV
Sbjct: 1  MPDLMDIAQERQEMLLAMQIAKARSKPITASA---FICASCEAEIPEQRRITVPGVIFCV 57

Query: 60 ECQAYQERQRKHY 72
           CQ   E ++KHY
Sbjct: 58 ACQQLHEEKKKHY 70


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 35 YLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
          +LCE C  PIPEARR   PGV LC+ CQ   E + KH
Sbjct: 33 FLCEECDAPIPEARRMAVPGVALCITCQEIAEMKNKH 69


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 34/72 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE D      E L    I   RQ+    G     CE CGN IP  R++  PGV  C E
Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 75 CQRVLEIRQKQY 86


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D A       T   I   R + +   +    C+ CG+PIPEARRK  PG T C++
Sbjct: 1  MPDPTDRAQEAAADYTRFSIEAARSRGSQSTL--ADCQDCGDPIPEARRKAVPGCTRCLD 58

Query: 61 CQAYQERQR 69
          CQ   E++R
Sbjct: 59 CQETYEQRR 67


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 1  MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS + D+  A + TEQL  + ++ I + ++   I    C+ACGN IPEARR   PGV LC
Sbjct: 1  MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60

Query: 59 VECQAYQERQRK 70
          V CQ  +E   K
Sbjct: 61 VGCQEVEEHLTK 72


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
          +V EQ+  +    I R R ++   G  +  CE C   IPEARR+  PGV LCV+CQA  +
Sbjct: 10 AVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEHD 68

Query: 67 RQRKHYA 73
          R+   Y+
Sbjct: 69 RENAAYS 75


>UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD
          Length = 75

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          +D  D A ++++      ++RI++     G+  + C  CG+ IP+ RR++  GVT CV+C
Sbjct: 6  ADPLDRAAALSQAHLEVSLSRIKK---FEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62

Query: 62 QAYQERQRKHY 72
           A +E   K+Y
Sbjct: 63 AAIKETLSKNY 73


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D+ D A  + E+     + ++R K  A    +  CE C  PIPEARR+   G T C++
Sbjct: 1  MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 59 CQQIYEYKQKGY 70


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M  EA+E  +    L+M G  R      A       C  CG PIPE RR   PGVTLCV 
Sbjct: 7  MGHEAEE-LARKAALSMAGTRR------ADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59

Query: 61 CQAYQE 66
          CQA +E
Sbjct: 60 CQAAKE 65


>UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales
           RepID=A4XDN2_SALTO
          Length = 139

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A S+ E++T   + R  ++++  G     CE CGNPIP  R   FP  TLCV C+   ER
Sbjct: 83  ANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQLAER 138

Query: 68  Q 68
           +
Sbjct: 139 R 139


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 22 RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
          R+  ++   G  +Y CE CG  IP ARR++ PGV  C+ CQ Y E
Sbjct: 18 RLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYLE 62


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A  + E      + + R       +    CE C  PIPE RR++  GVT CV 
Sbjct: 1  MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57

Query: 61 CQAYQERQRKHY 72
          CQ   E Q++++
Sbjct: 58 CQQRFEIQQRNF 69


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
          + +   G+    CE CG PIP AR+   PG T CV+CQ  +ER R+
Sbjct: 23 RDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQNRRERPRR 68


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60
          D+ D A  + EQ     I    + +++       C  EACG PIPE RR+   G   CVE
Sbjct: 2  DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61

Query: 61 CQAYQE 66
          CQ  +E
Sbjct: 62 CQERRE 67


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 1  MSDEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59
          M+DE D A  ++E+ L       +  K  A  +    CE CG PIPE RR+  PG T CV
Sbjct: 1  MADEIDLAQEISERHLEAALAGHLDHKPAAESL--THCEECGRPIPEGRRQAQPGCTRCV 58

Query: 60 ECQA 63
           CQ+
Sbjct: 59 RCQS 62


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 29 AHGIPVY------LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
          AH  PV        C  C   IPE RR+  PGV+ CV CQ   E Q++H+
Sbjct: 21 AHARPVVTQASAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSEAQQRHF 70


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 30 HGIPVYLC--EACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           G+    C  + CG PIPE RRK  PGV  CVECQ   E++
Sbjct: 36 QGLSALRCLYDGCGEPIPEQRRKALPGVKFCVECQQRLEKK 76


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
          CE CG PIP+ARR+  PG + C++CQ   ER+
Sbjct: 35 CEDCGEPIPQARRRAAPGCSRCIDCQDRHERR 66


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A    + L    + + R +I    +    CE C NPIPE RR    G   C+ 
Sbjct: 1  MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59

Query: 61 CQAYQERQR 69
          CQ+ +E++R
Sbjct: 60 CQSLREQRR 68


>UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH
          Length = 73

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS E D A   ++ L    I  +  +    G+  + CE CG  IPE RR    G T C +
Sbjct: 1  MSKEMDLACEQSQLLLDKQIKAVTGRYI--GVSAFECEDCGREIPEKRRIAVMGCTRCAD 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQTVYELKSKHY 70


>UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3
           Tax=Propionibacterium acnes RepID=D1YA14_PROAC
          Length = 159

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           CE+CG PI +AR + FP  T+CV+C+  QER+
Sbjct: 128 CESCGEPIGKARLQAFPRATMCVKCKQRQERR 159


>UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces
           RepID=D1X2L9_9ACTO
          Length = 248

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           LCE CG PI +AR + FP  TLCVE +  QER+
Sbjct: 215 LCEICGKPIGKARMQAFPRATLCVEDKQKQERR 247


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQE 66
          C  CG+ IP++RR+  PGV+LC+ CQ ++E
Sbjct: 40 CRDCGDEIPDSRRESIPGVSLCMYCQEWRE 69


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGI-NRI-RQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          M D  D A  +  QLT   + N++ R K  A       C  CG+PIPEARR+   G   C
Sbjct: 1  MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60

Query: 59 VECQAYQERQRK 70
            CQ+  E+ ++
Sbjct: 61 THCQSDLEKMKR 72


>UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae
          RepID=Q3ZL39_ESCBL
          Length = 76

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
          E+L    + R+++   ++G     C  C  PIP AR +  P    CV CQA +E +RKH
Sbjct: 17 ERLLNKHLRRVKELPESYG----FCNDCEQPIPAARLQALPDAVTCVTCQAIREHRRKH 71


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 42.0 bits (97), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 24/46 (52%)

Query: 26 KINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
          +IN + +    CE CG  IPE RR   PG   C ECQ+  E + K 
Sbjct: 23 RINRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQSVIELKNKQ 68


>UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas
          testosteroni KF-1 RepID=B7WXU2_COMTE
          Length = 76

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 39 ACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
          ACG  IPEARRK  PG   CV+C++ QER++
Sbjct: 42 ACGALIPEARRKAVPGCQRCVKCESAQERKK 72


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          DE DE+  V  + L      R  + + A     Y C  CG  IPE RR+   GV LC++C
Sbjct: 2  DEGDESVRVQARALNQYLAGRATKLLVAKASASY-CARCGEDIPEPRRQAVKGVQLCIDC 60

Query: 62 QAYQERQR 69
          Q   ER++
Sbjct: 61 QTLSERKQ 68


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL-CEACGNPIPEARRKIFPGVTLCVEC 61
          D  D+A    E +    +    Q+ N    P  L CE CG  IPEARR+  PG   C+ C
Sbjct: 2  DVIDQANERAENMVQAALA---QRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISC 58

Query: 62 QAYQE 66
          Q  +E
Sbjct: 59 QELRE 63


>UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10
           Tax=Actinomycetales RepID=A6WCW5_KINRD
          Length = 159

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 31  GIPVY-LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           G  VY +CE+C  P+ +AR + FP VTLCV C++  ER+
Sbjct: 121 GSGVYGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159


>UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales
           RepID=A1SL71_NOCSJ
          Length = 283

 Score = 41.2 bits (95), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +CE+CGNPI + R   FP  TLC+ C+  +ER+
Sbjct: 251 VCESCGNPIGKMRLMAFPRATLCMTCKQREERR 283


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 41.2 bits (95), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 23/47 (48%)

Query: 26 KINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
          +   HG     C  CG PIP ARR   P  T C ECQ   E++R  Y
Sbjct: 26 RAQCHGAGAEECVECGEPIPAARRACVPYATRCTECQGRFEQRRTGY 72


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 23 IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
          +  ++   G     C  CG  IP  RR++ PGV  C+ CQ  +ER    Y
Sbjct: 2  LSSRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51


>UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8
           Tax=Deltaproteobacteria RepID=A1AL35_PELPD
          Length = 118

 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 20  INRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
           IN+I++ ++      + +CE CG+ I EAR K+ P  TLC+ C+   E++ K 
Sbjct: 65  INKIKEALSRIDSGEFGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEKR 117


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 40.4 bits (93), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A    E+L  T    +R     +G+    CE CG PI +AR + FP   LCV+C+   ER
Sbjct: 176 AAGSRERLEQTERALLRMDAGTYGV----CENCGKPIGKARMQAFPHAILCVDCKQKSER 231

Query: 68  Q 68
           +
Sbjct: 232 R 232


>UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella
          RepID=Q0HYS5_SHESR
          Length = 68

 Score = 40.4 bits (93), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
          C  CG+ IPE RR+   GV LCV CQ ++E Q
Sbjct: 37 CAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68


>UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus
           RepID=A5UPY9_ROSS1
          Length = 121

 Score = 40.4 bits (93), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           +C  CG PIP  R +  P  TLCV CQ+ +ER R+
Sbjct: 86  ICADCGEPIPIERLEALPYATLCVRCQSTRERARR 120


>UniRef50_B8GPY8 Transcriptional regulator, TraR/DksA family n=1
           Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPY8_THISH
          Length = 114

 Score = 40.0 bits (92), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           +C ACG  IPEAR KI P   LC  C + QE
Sbjct: 82  ICAACGEAIPEARLKILPQARLCAACASRQE 112


>UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria
           RepID=Q2LSS1_SYNAS
          Length = 150

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           LCE CG PI E R    P  TLC++C+  QE+  K
Sbjct: 112 LCEVCGGPISEKRLMARPVTTLCIDCKTKQEKLEK 146


>UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V602_ACIBY
          Length = 72

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
          CE CGN IP  R++ +  VTLCVEC+  QE+  K Y
Sbjct: 37 CEECGNDIPIERQR-YGSVTLCVECKNTQEKLSKRY 71


>UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium
           modesticaldum Ice1 RepID=B0TGP7_HELMI
          Length = 238

 Score = 39.3 bits (90), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           +CE C   IP+AR    P  TLC+ECQ+++E
Sbjct: 90  ICERCHQKIPDARMAAMPTATLCIECQSHEE 120


>UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7QCE7_CATAD
          Length = 275

 Score = 39.3 bits (90), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +CE+CG P+ + R + FP  TLC+ C+  QER+
Sbjct: 243 VCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 39.3 bits (90), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS + D+A  + E+     ++   ++          C+ CG+ IPEARR+   G   C+E
Sbjct: 1  MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60

Query: 61 CQAYQERQRKHYA 73
          CQ   E  +  YA
Sbjct: 61 CQERIEHAKAQYA 73


>UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae
           RepID=A4X6U9_SALTO
          Length = 132

 Score = 39.3 bits (90), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
            CE CG  IP  R +IFP  T CV C+  +ER+
Sbjct: 98  FCEGCGASIPVERLEIFPSATTCVTCKQTRERR 130


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 38.9 bits (89), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQ 62
           LCE CG PIPE R +I P    CV CQ
Sbjct: 81  LCEKCGKPIPEGRLEILPYARCCVSCQ 107


>UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium
          extorquens AM1 RepID=C5B4E4_METEA
          Length = 73

 Score = 38.5 bits (88), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D    + E      +  IR +     +    C+ CG  IP  RR+  P    CV 
Sbjct: 1  MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60

Query: 61 CQAYQER 67
          CQ   ER
Sbjct: 61 CQTLAER 67


>UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B2I3M6_ACIBC
          Length = 66

 Score = 38.5 bits (88), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 1  MSDEADEAYSVTEQLTMTGI-NRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59
          M+D  D+A    + L    I NR R      G     C  CG  IPE RR+   GV  C+
Sbjct: 1  MTDLIDKAQESADYLLQQEIANRCR----FEGESEKECVECGEEIPE-RRRALGGVKFCI 55

Query: 60 ECQAYQERQRK 70
          ECQ   ER+R+
Sbjct: 56 ECQTKLERKRR 66


>UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2
           RepID=C0QJK4_DESAH
          Length = 114

 Score = 38.5 bits (88), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60
           S   +EA     ++T++ + R   +I   G P + LC AC  PIP AR  I P   LCV+
Sbjct: 51  SKSMNEAALKRARITLSKLERALARI---GSPDFGLCSACEEPIPFARLMILPETELCVK 107

Query: 61  C 61
           C
Sbjct: 108 C 108


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI            99   5e-20
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    77   2e-13
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    77   2e-13
UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B...    76   2e-13
UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    76   3e-13
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          76   3e-13
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    76   5e-13
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    75   6e-13
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    75   7e-13
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    74   1e-12
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    74   1e-12
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    74   1e-12
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    74   2e-12
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    72   4e-12
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    71   1e-11
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    69   3e-11
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    69   3e-11
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    69   5e-11
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...    68   7e-11
UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD      67   1e-10
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    67   2e-10
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    67   2e-10
UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...    66   3e-10
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    66   5e-10
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    66   5e-10
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...    65   6e-10
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    65   8e-10
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    63   3e-09
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    63   3e-09
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...    62   5e-09
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    61   1e-08
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    58   1e-07
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    56   4e-07
UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc...    55   5e-07
UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=...    55   6e-07
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    55   9e-07
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    51   1e-05

Sequences not found previously or not previously below threshold:

UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri...    63   2e-09
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    61   2e-08
UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=...    59   4e-08
UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=...    59   6e-08
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    58   9e-08
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    57   1e-07
UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo...    57   2e-07
UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep...    57   2e-07
UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot...    56   3e-07
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  55   9e-07
UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12...    54   1e-06
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    54   1e-06
UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ...    54   2e-06
UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass...    53   2e-06
UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto...    53   2e-06
UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto...    53   2e-06
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    53   2e-06
UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob...    53   3e-06
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   53   4e-06
UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ...    52   5e-06
UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr...    52   6e-06
UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum...    51   1e-05
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    51   1e-05
UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ...    51   1e-05
UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc...    50   2e-05
UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ...    50   2e-05
UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10...    50   2e-05
UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5...    50   3e-05
UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ...    50   3e-05
UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ...    49   3e-05
UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ...    49   4e-05
UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact...    49   4e-05
UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ...    49   4e-05
UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi...    49   4e-05
UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom...    49   6e-05
UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p...    48   8e-05
UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7...    48   8e-05
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    48   1e-04
UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R...    48   1e-04
UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba...    47   1e-04
UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ...    47   1e-04
UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ...    47   1e-04
UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ...    47   2e-04
UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1...    47   2e-04
UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter...    47   2e-04
UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ...    47   2e-04
UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass...    47   2e-04
UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro...    47   2e-04
UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ...    47   2e-04
UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ...    47   2e-04
UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi...    47   3e-04
UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm...    47   3e-04
UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu...    47   3e-04
UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae...    46   3e-04
UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ...    46   3e-04
UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID...    46   3e-04
UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3...    46   3e-04
UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte...    46   4e-04
UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=...    46   4e-04
UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono...    46   4e-04
UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuens...    46   4e-04
UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n...    46   4e-04
UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ...    46   4e-04
UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ...    46   4e-04
UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a...    46   4e-04
UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop...    46   5e-04
UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil...    45   5e-04
UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT...    45   5e-04
UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ...    45   5e-04
UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1...    45   6e-04
UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu...    45   6e-04
UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ...    45   6e-04
UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete...    45   7e-04
UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom...    45   8e-04
UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon...    45   8e-04
UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ...    45   8e-04
UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr...    45   8e-04
UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ...    45   0.001
UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo...    44   0.001
UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact...    44   0.001
UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib...    44   0.001
UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy...    44   0.001
UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ...    44   0.001
UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ...    44   0.001
UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph...    44   0.001
UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1...    44   0.002
UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1...    44   0.002
UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteur...    44   0.002
UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.002
UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium...    44   0.002
UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.002
UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.002
UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa...    44   0.002
UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM...    44   0.002
UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim...    43   0.002
UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ...    43   0.003
UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm...    43   0.003
UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=...    43   0.003
UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr...    43   0.003
UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi...    43   0.003
UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega...    43   0.004
UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ...    43   0.004
UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.004
UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253...    42   0.004
UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ...    42   0.004
UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magneto...    42   0.005
UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R...    42   0.006
UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3...    42   0.006
UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens...    42   0.007
UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo...    42   0.007
UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac...    42   0.007
UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact...    42   0.008
UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.008
UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ...    42   0.008
UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1...    42   0.008
UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ...    42   0.008
UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Maripro...    41   0.009
UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.009
UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.009
UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida...    41   0.009
UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.010
UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=...    41   0.010
UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ...    41   0.010
UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati...    41   0.011
UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria...    41   0.011
UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.012
UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.012
UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9...    41   0.013
UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ...    41   0.013
UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ...    41   0.013
UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther...    41   0.014
UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.015
UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ...    40   0.016
UniRef50_B7J8S5 Putative uncharacterized protein n=1 Tax=Acidith...    40   0.016
UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.017
UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto...    40   0.018
UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini...    40   0.019
UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ...    40   0.020
UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ...    40   0.020
UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.021
UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ...    40   0.022
UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ...    40   0.024
UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68...    40   0.025
UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress...    40   0.025
UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1...    40   0.025
UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11...    40   0.025
UniRef50_UPI00016C3CE0 transcriptional regulators, TraR/DksA fam...    40   0.026
UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re...    40   0.026
UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.026
UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.027
UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3...    40   0.028
UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro...    40   0.029
UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ...    40   0.030
UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6...    40   0.030
UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5...    40   0.032
UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.034
UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.034
UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.036
UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte...    39   0.036
UniRef50_A3IED4 DnaK suppressor protein n=2 Tax=Bacillaceae RepI...    39   0.036
UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro...    39   0.037
UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1...    39   0.038
UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr...    39   0.040
UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1...    39   0.040
UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.040
UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.041
UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ...    39   0.042
UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4...    39   0.042
UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax...    39   0.043
UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br...    39   0.043
UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana...    39   0.044
UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax...    39   0.045
UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri...    39   0.046
UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ...    39   0.046
UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.049
UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 ...    39   0.050
UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ...    39   0.050
UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro...    39   0.053
UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep...    39   0.053
UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ...    39   0.054
UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family prot...    39   0.054
UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil...    39   0.058
UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1...    39   0.060
UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitroco...    39   0.063
UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel...    39   0.065
UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge...    39   0.067
UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2...    39   0.070
UniRef50_A1VFA5 Transcriptional regulator, TraR/DksA family n=3 ...    39   0.071
UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.073
UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.075
UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum...    38   0.076
UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ...    38   0.085
UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac...    38   0.087

>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE
Sbjct: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60

Query: 61 CQAYQERQRKHYA 73
          CQAYQERQRKHYA
Sbjct: 61 CQAYQERQRKHYA 73


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 77.1 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1  MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MSD+ D   A +VT       I  +R++++   + +  CE CG+ I E RR+I PGV LC
Sbjct: 1  MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60

Query: 59 VECQAYQERQRK 70
          V CQ   E   +
Sbjct: 61 VGCQEVAEHWEQ 72


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 76.7 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D      E+     I++ R +        +LCE+C  PIPEARR   PGV LCV 
Sbjct: 1  MADVMDLVQQRVEEERERHIHKARSR--QAAPSRFLCESCNGPIPEARRAALPGVELCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ  +E +  HY
Sbjct: 59 CQEIKELKSLHY 70


>UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH
          Length = 73

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS E D A   ++ L    I  +  +    G+  + CE CG  IPE RR    G T C +
Sbjct: 1  MSKEMDLACEQSQLLLDKQIKAVTGRYI--GVSAFECEDCGREIPEKRRIAVMGCTRCAD 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQTVYELKSKHY 70


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D A    E L    I + R K        ++C +C   IPE RR   PGV  CV 
Sbjct: 1  MPDLMDIAQERQEMLLAMQIAKARSKPITA--SAFICASCEAEIPEQRRITVPGVIFCVA 58

Query: 61 CQAYQERQRKHY 72
          CQ   E ++KHY
Sbjct: 59 CQQLHEEKKKHY 70


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D+ D A     ++  T + R   K +  G+ ++ CE C +PIPEARR   PGV LCV CQ
Sbjct: 2  DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61

Query: 63 AYQERQRK 70
             E+  +
Sbjct: 62 TRIEQLAR 69


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K       ++ C  CG PIPE RR+  PG+T C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQSRFKP-GSAPSLFHCRVCGKPIPEKRRQTLPGITTCKE 59

Query: 61 CQAYQERQR 69
          CQ   ER  
Sbjct: 60 CQEKLERHS 68


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A    ++     I+  R + +   +  ++CE C  PIPEARR+  PGV  CV 
Sbjct: 1  MADAMDLAQLREQEDRERHISNARSRRHE--VSAFICEECDAPIPEARRRAIPGVQCCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQEILELKSKHY 70


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 74.8 bits (182), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K  A    ++ C  CG PIPE RR+  PGVT C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQNRFKP-ATTPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59

Query: 61 CQAYQERQRK 70
          CQA  ER+++
Sbjct: 60 CQAIIERRQR 69


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 74.4 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 34/72 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE D      E L    I   RQ+    G     CE CGN IP  R++  PGV  C E
Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 75 CQRVLEIRQKQY 86


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 74.4 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE +   S    L    I RIRQ++   GI    C+ CG P+P  RR++ PGV  CV 
Sbjct: 1  MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58

Query: 61 CQAYQERQRKHY 72
          CQ  QE Q +HY
Sbjct: 59 CQEVQEIQARHY 70


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 74.4 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D+ D A  + E+     + ++R K  A    +  CE C  PIPEARR+   G T C++
Sbjct: 1  MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 59 CQQIYEYKQKGY 70


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 39/71 (54%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSD AD+A  V EQ     +   +  IN        C+ C + IPEARR+  PGV LCV+
Sbjct: 1  MSDIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVD 60

Query: 61 CQAYQERQRKH 71
          C + QE + +H
Sbjct: 61 CASLQEIKGRH 71


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A +  ++     I+  R++  +     +LCE C  PIPEARR   PGV LC+ 
Sbjct: 1  MADFIDLAQAREQEDRERHIHHARRRPAS--PSRFLCEECDAPIPEARRMAVPGVALCIT 58

Query: 61 CQAYQERQRKH 71
          CQ   E + KH
Sbjct: 59 CQEIAEMKNKH 69


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A  + E      + + R       +    CE C  PIPE RR++  GVT CV 
Sbjct: 1  MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57

Query: 61 CQAYQERQRKHY 72
          CQ   E Q++++
Sbjct: 58 CQQRFEIQQRNF 69


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 69.4 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS++ ++  A + T   T  GIN IR K+++      +CE CG  IP AR+   PGV LC
Sbjct: 1  MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60

Query: 59 VECQAYQERQRKHYA 73
            CQ  +E+Q  H A
Sbjct: 61 AACQDVKEKQDVHRA 75


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 69.4 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A    + L    + + R +I    +    CE C NPIPE RR    G   C+ 
Sbjct: 1  MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59

Query: 61 CQAYQERQR 69
          CQ+ +E++R
Sbjct: 60 CQSLREQRR 68


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 69.0 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE D A  ++E+     +             +  CE CG PIPE RR+  PG T CV 
Sbjct: 1  MADEIDLAQEISERHLEAALAGHLDH-KPAAESLTHCEECGRPIPEGRRQAQPGCTRCVR 59

Query: 61 CQAYQE 66
          CQ+  E
Sbjct: 60 CQSGIE 65


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 1  MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
          M++       V EQ+  T    INR R  ++        C  CG  IPEARR I PGV L
Sbjct: 1  MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60

Query: 58 CVECQAYQERQRKHYA 73
          CVECQA ++ + K ++
Sbjct: 61 CVECQAKEDAREKAFS 76


>UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD
          Length = 75

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          +D  D A ++++      ++RI++     G+  + C  CG+ IP+ RR++  GVT CV+C
Sbjct: 6  ADPLDRAAALSQAHLEVSLSRIKK---FEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62

Query: 62 QAYQERQRKHY 72
           A +E   K+Y
Sbjct: 63 AAIKETLSKNY 73


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 67.1 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ DEA ++ E+     I R   +I  HG     C  CG PI EARRK  P  T CV+
Sbjct: 1  MTDQLDEAQALEERERDDCIARAAGQIKGHG--ATHCVVCGEPIDEARRKAMPSATRCVD 58

Query: 61 CQAYQERQRKHY 72
          CQ  +ER  + +
Sbjct: 59 CQESRERWSRSH 70


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 66.7 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D A       T   I   R + +     +  C+ CG+PIPEARRK  PG T C++
Sbjct: 1  MPDPTDRAQEAAADYTRFSIEAARSRGSQS--TLADCQDCGDPIPEARRKAVPGCTRCLD 58

Query: 61 CQAYQERQR 69
          CQ   E++R
Sbjct: 59 CQETYEQRR 67


>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score = 66.3 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D             I R R +I   G  +  CE CG PIP+ARR+  PGV LC+ CQ  +
Sbjct: 9  DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67

Query: 66 ERQRKHYA 73
          + Q+  Y 
Sbjct: 68 DLQKPAYT 75


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAH------GIPVYLC--EACGNPIPEARRKIF 52
          M D+ D A    +      +     +          G+    C  + CG PIPE RRK  
Sbjct: 1  MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60

Query: 53 PGVTLCVECQAYQERQ 68
          PGV  CVECQ   E++
Sbjct: 61 PGVKFCVECQQRLEKK 76


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A      +    I   R  +         C  C   IPE RR+  PGV+ CV 
Sbjct: 1  MADTIDMAQERQALMLEKQIAHARPVVTQA--SAQFCADCDGEIPEVRRRAIPGVSRCVA 58

Query: 61 CQAYQERQRKHY 72
          CQ   E Q++H+
Sbjct: 59 CQEVSEAQQRHF 70


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D      +      I R R ++   G  +  CE C   IPEARR+  PGV LCV+CQA  
Sbjct: 9  DAVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEH 67

Query: 66 ERQRKHYA 73
          +R+   Y+
Sbjct: 68 DRENAAYS 75


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 1  MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS + D+  A + TEQL  + ++ I + ++   I    C+ACGN IPEARR   PGV LC
Sbjct: 1  MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60

Query: 59 VECQAYQERQRK 70
          V CQ  +E   K
Sbjct: 61 VGCQEVEEHLTK 72


>UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae
          RepID=Q3ZL39_ESCBL
          Length = 76

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+   D A  +  +     +N+  +++         C  C  PIP AR +  P    CV 
Sbjct: 1  MTKAFDRASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVTCVT 60

Query: 61 CQAYQERQRKH 71
          CQA +E +RKH
Sbjct: 61 CQAIREHRRKH 71


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A  +  +     I   R  +   G+    CE CG PIP AR+   PG T CV+CQ
Sbjct: 2  DPFDRAQELEMEQREAAIAAAR-DLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQ 60

Query: 63 AYQERQRK 70
            +ER R+
Sbjct: 61 NRRERPRR 68


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A    E+       R+  ++   G  +Y CE CG  IP ARR++ PGV  C+ CQ
Sbjct: 2  DIVDIANDYAERELA---ERLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQ 58

Query: 63 AYQE 66
           Y E
Sbjct: 59 EYLE 62


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHG--IPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
          D      E  T   I R+R +    G       CE C  PIPEARR+  PGV LCV+CQ+
Sbjct: 9  DAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQS 68

Query: 64 YQER 67
           ++R
Sbjct: 69 GRDR 72


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 61.3 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60
          D+ D A  + EQ     I    + +++       C  EACG PIPE RR+   G   CVE
Sbjct: 2  DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61

Query: 61 CQAYQER 67
          CQ  +E+
Sbjct: 62 CQERREQ 68


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          M D  D A  +  QLT   +     R K  A       C  CG+PIPEARR+   G   C
Sbjct: 1  MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60

Query: 59 VECQAYQERQRK 70
            CQ+  E+ ++
Sbjct: 61 THCQSDLEKMKR 72


>UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter
          arcticus 273-4 RepID=Q4FUG7_PSYA2
          Length = 66

 Score = 59.4 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+AD A    +      ++R           +  C  CG  IP A+R+   GVTLCV+
Sbjct: 1  MADDADRANDYVDLTMAHCLSRA---PKFDKPSLTECMECGEDIP-AKRQAMGGVTLCVD 56

Query: 61 CQAYQERQRK 70
          CQ+  E++ K
Sbjct: 57 CQSVFEKRGK 66


>UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas
          putida KT2440 RepID=Q88IG2_PSEPK
          Length = 72

 Score = 58.6 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A    +      ++   +        +  C  CG  IPE RR    G   C+E
Sbjct: 1  MADIADLANDRAQWHLDLVLSA--RLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIE 58

Query: 61 CQAYQERQRKHYA 73
          CQ + E++   YA
Sbjct: 59 CQGFFEKKGARYA 71


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A  + E      ++  R  IN + +    CE CG  IPE RR   PG   C ECQ
Sbjct: 2  DIIDTAAEIEELQRNAALSAHR--INRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQ 59

Query: 63 AYQERQRKHY 72
          +  E + K  
Sbjct: 60 SVIELKNKQR 69


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A + T +  ++   R   +++A    +  CE CGNPI +AR + FP  TLCVEC+ 
Sbjct: 176 EHELALAATAREVLSQTERALDRLDAGTYGL--CENCGNPIGKARMQAFPRATLCVECKQ 233

Query: 64  YQERQ 68
            QER+
Sbjct: 234 KQERR 238


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS + D+A  + E+     ++   ++          C+ CG+ IPEARR+   G   C+E
Sbjct: 1  MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60

Query: 61 CQAYQERQRKHYA 73
          CQ   E  +  YA
Sbjct: 61 CQERIEHAKAQYA 73


>UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium
          extorquens AM1 RepID=C5B4E4_METEA
          Length = 73

 Score = 56.7 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D    + E      +  IR +     +    C+ CG  IP  RR+  P    CV 
Sbjct: 1  MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60

Query: 61 CQAYQER 67
          CQ   ER
Sbjct: 61 CQTLAER 67


>UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7
          Length = 69

 Score = 56.7 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A +   Q     +   + ++   G  +  C+ CG  IPEARR    G+  C  
Sbjct: 1  MADCFDRAQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIRCTP 59

Query: 61 CQAYQERQRK 70
          CQA  E+  +
Sbjct: 60 CQARFEKGGR 69


>UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=45 Tax=root RepID=A7ZJE9_ECO24
          Length = 73

 Score = 56.3 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A  + E    T I    +++N   I    C  CG+PI E RR +  G   C  
Sbjct: 1  MADIIDSASEIEELQRNTAIK--MRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCAS 58

Query: 61 CQAYQERQRKHY 72
          CQ   E   K  
Sbjct: 59 CQEDLELISKQR 70


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A  +        +    +   A       CE CG PIP+ARR+  PG + C++
Sbjct: 1  MADLADHANELVLARLDGLLAA--RPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCID 58

Query: 61 CQAYQERQ 68
          CQ   ER+
Sbjct: 59 CQDRHERR 66


>UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales
           RepID=A4XDN2_SALTO
          Length = 139

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E   A S+ E++T   + R  ++++  G     CE CGNPIP  R   FP  TLCV C+ 
Sbjct: 79  EISLANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQ 134

Query: 64  YQERQ 68
             ER+
Sbjct: 135 LAERR 139


>UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3
           Tax=Propionibacterium acnes RepID=D1YA14_PROAC
          Length = 159

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIFP 53
           D  D   S  E+     + R  + +                  CE+CG PI +AR + FP
Sbjct: 85  DTIDVGSSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFP 144

Query: 54  GVTLCVECQAYQERQ 68
             T+CV+C+  QER+
Sbjct: 145 RATMCVKCKQRQERR 159


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D+A    E +    + +  +           CE CG  IPEARR+  PG   C+ CQ
Sbjct: 2  DVIDQANERAENMVQAALAQ--RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQ 59

Query: 63 AYQERQRK 70
            +E   +
Sbjct: 60 ELREHPAR 67


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D  +   E      ++    +  A       C  CG PIPE RR   PGVTLCV 
Sbjct: 1  MPDFCDMGHEAEELARKAALSMAGTR-RADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59

Query: 61 CQAYQE 66
          CQA +E
Sbjct: 60 CQAAKE 65


>UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12
          Tax=Desulfovibrio RepID=A1VE28_DESVV
          Length = 78

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAH-----GIPVYLCEACGNPIPEARRKIFPGV 55
          M+D  D+A     +     I+  R ++ +            C  CG  IPEAR K  PG 
Sbjct: 6  MADIFDQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGC 65

Query: 56 TLCVECQAYQE 66
           LC EC    E
Sbjct: 66 GLCRECAEEME 76


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           ++   G     C  CG  IP  RR++ PGV  C+ CQ  +ER    Y
Sbjct: 4  SRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51


>UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root
          RepID=YO82_BPP2
          Length = 74

 Score = 53.6 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D       +L    IN  R  +   G    +CE C  PIP ARR  +P  T CV 
Sbjct: 1  MPDNVDFIQEQQAELLERQINAAR--VKHCGASALVCEECDAPIPAARRAAYPSATRCVS 58

Query: 61 CQAYQERQRKHY 72
          CQ+  E + KHY
Sbjct: 59 CQSVFEAKNKHY 70


>UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=A8R990_9CAUD
          Length = 85

 Score = 53.2 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 9  YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
              E +    I   R+++         C  C   IPEARR+   GV  C+ CQ+  +
Sbjct: 12 QLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIYCIGCQSMHD 69


>UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V602_ACIBY
          Length = 72

 Score = 53.2 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A  +  QL    I    Q  +     +  CE CGN IP  R++ +  VTLCVE
Sbjct: 7  MTDKIDIAQEL--QLKQVQI----QPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCVE 59

Query: 61 CQAYQERQRKHY 72
          C+  QE+  K Y
Sbjct: 60 CKNTQEKLSKRY 71


>UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B2I3M6_ACIBC
          Length = 66

 Score = 53.2 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D+A    + L    I     +    G     C  CG  IPE RR+   GV  C+E
Sbjct: 1  MTDLIDKAQESADYLLQQEIA---NRCRFEGESEKECVECGEEIPE-RRRALGGVKFCIE 56

Query: 61 CQAYQERQRK 70
          CQ   ER+R+
Sbjct: 57 CQTKLERKRR 66


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 53.2 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A +   +  +    R   +++A    V  CE CG PI +AR + FP   LCV+C+ 
Sbjct: 170 EHELALAAGSRERLEQTERALLRMDAGTYGV--CENCGKPIGKARMQAFPHAILCVDCKQ 227

Query: 64  YQERQ 68
             ER+
Sbjct: 228 KSERR 232


>UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67Q17_SYMTH
          Length = 269

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53
             AD      E+    G+     +                  +CE CG PI   R K FP
Sbjct: 46  HPADLGTETFERSKDLGLRSHMLRRIQEIESALQRMDQGTYGICEECGRPIDPERLKAFP 105

Query: 54  GVTLCVECQAYQERQ 68
             T C+ CQ  +E +
Sbjct: 106 SATTCITCQQRREAR 120


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          DE DE+  V  +     +     K+         C  CG  IPE RR+   GV LC++CQ
Sbjct: 2  DEGDESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61

Query: 63 AYQERQR 69
             ER++
Sbjct: 62 TLSERKQ 68


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 4  EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
          E + A  + +      I   R + +  G     C  CG PIP ARR   P  T C ECQ 
Sbjct: 6  EFELAQQIEQMQRDVAIELARAQCHGAG--AEECVECGEPIPAARRACVPYATRCTECQG 63

Query: 64 YQERQRKHY 72
            E++R  Y
Sbjct: 64 RFEQRRTGY 72


>UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas
          testosteroni KF-1 RepID=B7WXU2_COMTE
          Length = 76

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQK----INAHGIPVYLCEACGNPIPEARRKIFPGVT 56
          M+D  D A +   QL    +    ++              C  CG  IPEARRK  PG  
Sbjct: 1  MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATECA-CGALIPEARRKAVPGCQ 59

Query: 57 LCVECQAYQERQR 69
           CV+C++ QER++
Sbjct: 60 RCVKCESAQERKK 72


>UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1
          Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM
          Length = 73

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGI----PVYLCEACGNPIPEARRKIFPGVTLC 58
          DE D A    +      I    ++ +            C  CG  IP  R K  P V  C
Sbjct: 2  DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61

Query: 59 VECQAYQER 67
          V CQ  +ER
Sbjct: 62 VSCQDKKER 70


>UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1
          RepID=Q2WA51_MAGSA
          Length = 74

 Score = 51.3 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 26/71 (36%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A    E      +   R +    G   Y C +CG  IP+ RR   PG   C  
Sbjct: 1  MADLADLAKEREEANREAALAAFRARARPTGESAYFCRSCGERIPDERRAAVPGTNHCTF 60

Query: 61 CQAYQERQRKH 71
          C         H
Sbjct: 61 CAQQITAASPH 71


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1  MSDEADEAYSVTE----QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVT 56
          MS + D++ +  E            R   +I  H +    C  CG+ IP++RR+  PGV+
Sbjct: 1  MSIDVDDSMAQNESQVNIDNRFAEIRAALRIKGH-VSRRHCRDCGDEIPDSRRESIPGVS 59

Query: 57 LCVECQAYQERQRK 70
          LC+ CQ ++E   K
Sbjct: 60 LCMYCQEWRESGDK 73


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D AD+A  + E      +   R+   A G     CE CG+PIPEARR+ +P  T C ECQ
Sbjct: 2  DIADKAAEIEEMNRAQALAARRRIPAAPGCA--ECEDCGDPIPEARRRAYPSATRCTECQ 59

Query: 63 AYQERQRKHY 72
          A  ER  K+ 
Sbjct: 60 ARHERHAKNR 69


>UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7QCE7_CATAD
          Length = 275

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E   A +  E L  T   R   ++ A    V  CE+CG P+ + R + FP  TLC+ C+
Sbjct: 214 HEMAIANNAREMLQQT--ERALARLAADTYGV--CESCGEPVGKYRLQAFPRATLCMSCK 269

Query: 63  AYQERQ 68
             QER+
Sbjct: 270 QKQERR 275


>UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales
           RepID=A1SL71_NOCSJ
          Length = 283

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +E+  +  I R   +I+     V  CE+CGNPI + R   FP  TLC+ C+  +ER+
Sbjct: 229 SERDKLAQIERALARIDDGTYGV--CESCGNPIGKMRLMAFPRATLCMTCKQREERR 283


>UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces
           RepID=D1X2L9_9ACTO
          Length = 248

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E   A +  E L  T   R   ++ A    +  CE CG PI +AR + FP  TLCVE +
Sbjct: 186 HELSLAANAQEMLEQT--ERALARLEAGTYGL--CEICGKPIGKARMQAFPRATLCVEDK 241

Query: 63  AYQERQ 68
             QER+
Sbjct: 242 QKQERR 247


>UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10
           Tax=Actinomycetales RepID=A6WCW5_KINRD
          Length = 159

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             +  +    R   ++ +    V  CE+C  P+ +AR + FP VTLCV C++  ER+
Sbjct: 105 NARELLEQTQRALVRLGSGVYGV--CESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159


>UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium
           RepID=A3DD29_CLOTH
          Length = 212

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A  V E+  +  IN    K++        CE CG  I E R +  P   LC++C+ 
Sbjct: 61  ELNNALKVHEERLLEDINEALTKMDKGSFGK--CELCGKEIDEERLEALPYTRLCIDCEN 118

Query: 64  YQE 66
            +E
Sbjct: 119 AKE 121


>UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus
           RepID=A5UPY9_ROSS1
          Length = 121

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D A     +  +  +N   ++++       +C  CG PIP  R +  P  TLCV CQ+
Sbjct: 56  ERDLALRSNARELLEQVNAALRRLDEGTYG--ICADCGEPIPIERLEALPYATLCVRCQS 113

Query: 64  YQERQRK 70
            +ER R+
Sbjct: 114 TRERARR 120


>UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBC7_TOLAT
          Length = 76

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSD  D A  + +Q     + R  + +    +    C  C  PIP  R         CVE
Sbjct: 1  MSDVVDRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVE 60

Query: 61 CQAYQERQR 69
          CQA  E Q 
Sbjct: 61 CQALFEEQE 69


>UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root
          RepID=A5EYQ4_VIBC3
          Length = 69

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQLTMTGIN--RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D  D+A     +     +   R R    A+      C  C +PIP+ R++   G   C  
Sbjct: 2  DVIDDAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTP 61

Query: 61 CQAYQERQ 68
          CQA +E++
Sbjct: 62 CQAAKEQR 69


>UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria
          RepID=B3B1J8_ECO57
          Length = 75

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQLTMTGI--NRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D++D A +V E+ +   +     R++         +C  CG  IP AR    P    CV 
Sbjct: 2  DDSDRAQAVMERGSERALCNRLTRKRQAVDTPGRRVCADCGGEIPAARLVAVPDAIRCVN 61

Query: 61 CQAYQERQ 68
          CQ   E +
Sbjct: 62 CQNIMEAR 69


>UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex
          degensii KC4 RepID=C9R7U4_AMMDK
          Length = 176

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D A      L +  I    +++         CE+CG PIP  R +  P  TLC  C+  Q
Sbjct: 39 DLALREDALLKLQVIEDALRRLEEGTYG--YCESCGAPIPRERLEAVPYTTLCHACKERQ 96

Query: 66 ERQ 68
          E +
Sbjct: 97 EAK 99


>UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding
          protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO
          Length = 76

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A   TE +    I + +QK       V  C  C   IPE R+K   G   C++
Sbjct: 1  MTDQVDRANEYTEIMQQLAIQKHQQK-TREKSTVKYCLDCQEEIPEIRQKN--GYCRCID 57

Query: 61 CQAYQERQRKHY 72
          CQ   E+ ++ Y
Sbjct: 58 CQRIIEKHQRIY 69


>UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D3H2_PELTS
          Length = 242

 Score = 48.6 bits (114), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  I+R   KI         C+ CG  IP  R +  P    C +C+  +
Sbjct: 68  DFALRENAMLAVAAIDRALAKIENGTYGK--CDNCGREIPLERLEAVPSTVCCKKCKEAE 125

Query: 66  ERQRK 70
           E+  +
Sbjct: 126 EKNTR 130


>UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage
          gene n=1 Tax=Aliivibrio salmonicida LFI1238
          RepID=B6EIS7_ALISL
          Length = 71

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 3  DEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D  D A ++  + T   +     +QK          C  C   IP+AR++   G   CV 
Sbjct: 2  DAFDRASALEAKQTEVALANHMAKQKNKVEIKSAEECIECEKAIPKARQEAVKGCQYCVN 61

Query: 61 CQAYQER 67
          CQ   ++
Sbjct: 62 CQELADK 68


>UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7
           Tax=Actinomycetales RepID=A0LTP3_ACIC1
          Length = 527

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E   A     +  +        +I         CE CGNPI + R +  P  TLCV C+
Sbjct: 466 HEMSLAN--NARDLLVQTEHALARIADGTYGR--CENCGNPINKLRLQANPRATLCVSCK 521

Query: 63  AYQERQ 68
             +ER+
Sbjct: 522 QREERR 527


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
            D+     +   + T+  I     ++      +  CE CG PIPE R +I P    CV C
Sbjct: 49  PDDTALVQADALRQTLEDIEEALLRLRQGRYGL--CEKCGKPIPEGRLEILPYARCCVSC 106

Query: 62  QAYQERQR 69
           Q  +  + 
Sbjct: 107 QQRRRGRA 114


>UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT
          Length = 202

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTM-TGINRIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52
            D  D A    E +       R R+ I    + +          CE+CG  I   R +  
Sbjct: 121 PDSLDRAAKEEEFMLELRKRERERKLIAKIDLSLKDLEDNLYGYCESCGVEIGIKRLEAR 180

Query: 53  PGVTLCVECQAYQERQRKH 71
           P  T C++C+   E + K 
Sbjct: 181 PTATKCIDCKTVDEIKEKQ 199


>UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium
           modesticaldum Ice1 RepID=B0TGP7_HELMI
          Length = 238

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           I + +++I+       +CE C   IP+AR    P  TLC+ECQ+++E
Sbjct: 76  IAKAKRRISEGIYG--ICERCHQKIPDARMAAMPTATLCIECQSHEE 120


>UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2J7_9PLAN
          Length = 148

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE +   +  E   +  I+   +++ +       CE C  PIP  R +  P   +C++CQ
Sbjct: 53  DEINSQLAEVESRELAHIDTALERMRSGNYGA--CEGCNEPIPLLRLQALPYAVMCIKCQ 110

Query: 63  AYQER 67
              E+
Sbjct: 111 REAEK 115


>UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum
          intermedium LMG 3301 RepID=C4WG44_9RHIZ
          Length = 76

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          + A    EQ    GI   R  +   G     C  CG+ I   RR   P    CV+CQ   
Sbjct: 9  ELADMRAEQERDAGIAAARAPLKQTG--TLDCIRCGDEIEAERRAALPSARRCVDCQESF 66

Query: 66 ERQR 69
          ER +
Sbjct: 67 ERWQ 70


>UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2
           Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD
          Length = 222

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53
             AD A  V E+     I+                       LCE C   IP  R +  P
Sbjct: 45  HPADIATEVYERSRDVAIHDRLHHRIQAIDSALQRYEEGKYGLCEHCQKEIPLGRLEALP 104

Query: 54  GVTLCVECQAYQERQRKH 71
             T+C EC   +E + +H
Sbjct: 105 FTTVCTECSRLEEMEEQH 122


>UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V43_DESDG
          Length = 149

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIF 52
            DE ++A  + E      +     +  A                CE CG+ I EAR K  
Sbjct: 61  PDENEQASRLAELTLDVALRGRLARQLAAVESALHRIATGGFGRCEECGDEIGEARLKAN 120

Query: 53  PGVTLCVECQAYQERQR 69
           P  TLC+ CQ  +E + 
Sbjct: 121 PTTTLCIHCQEDREAEA 137


>UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria
           RepID=A6T2Z9_JANMA
          Length = 310

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGIN----RIRQKINAHGIPVY-----LCEACGNPIPEARRKIF 52
            D AD A    E            ++ +K+    + +       CE  G PI   R    
Sbjct: 229 PDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGEYGWCEETGEPIGVPRLLAR 288

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P  TL +E Q  +E ++K Y
Sbjct: 289 PTATLSLEAQQRRELKQKLY 308


>UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CWL7_HALOH
          Length = 228

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D       Q+ +  +     ++      +  CE CG  I E R +  P  TLC  CQA
Sbjct: 60  EKDRGLRDNAQVLLNKVENALNRLEEGNYGL--CEKCGQEIREERLETIPYATLCERCQA 117

Query: 64  YQERQRKHY 72
            +E +  + 
Sbjct: 118 KEEGKDYNR 126


>UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=Q6U9H2_9CAUD
          Length = 84

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 29 AHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            G     CE C  PIPEARR        CV+CQ   +
Sbjct: 31 YKGDTPEFCEECDEPIPEARRMAI-STAYCVQCQTVHD 67


>UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria
           RepID=DKSA_BUCBP
          Length = 151

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTE--------QLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52
            D  D A    E              I +I + +       +  CE+CG  I   R +  
Sbjct: 70  PDPIDRAVQEEEFSFELRHRDRERKLIEKIEKTLKKVENKDFGYCESCGIEIGIKRLEAR 129

Query: 53  PGVTLCVECQAYQERQRKH 71
           P   LC++C+   E + K 
Sbjct: 130 PTANLCIDCKTLSEIREKQ 148


>UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM
          Length = 203

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           CE CG PIPE R    P    CV+C+   E
Sbjct: 91  CENCGKPIPEERLDALPYAEFCVQCKKKSE 120


>UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE
          Length = 143

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D     TE+                +    Q+I      V  C  C N IP  R K
Sbjct: 54  ADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGV--CSECDNEIPGKRLK 111

Query: 51  IFPGVTLCVECQAYQERQR 69
             P    C++CQ   +R+R
Sbjct: 112 AVPWTPYCLDCQDSADRRR 130


>UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4
          RepID=B9JYG7_AGRVS
          Length = 72

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 5  ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
           + A    EQ     +   R  +   G     C  CG  IP+ARR  +P    C +CQ  
Sbjct: 7  FELAEERIEQERDAKVAAARADLKKAG--ATECLDCGRAIPQARRFAYPSAIRCFDCQVS 64

Query: 65 QERQ 68
           ER+
Sbjct: 65 IERE 68


>UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM
          2246 RepID=UPI00016C4B65
          Length = 95

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 9  YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           +  E   +  I R  +++ A       CE C   IP AR    P  T CV+CQ   ER
Sbjct: 1  MAELEAKELAQIERALRRLKAGTYGK--CEVCSIKIPVARLNALPFSTFCVDCQREMER 57


>UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4
           RepID=B3DUR8_METI4
          Length = 249

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A S+  Q   + I               +C+ CG PIP  R +  P     V+CQ 
Sbjct: 147 DRDFALSLLSQENDSLIEIDDSLKRIEDNTYGICQMCGKPIPIIRLQAIPYARFTVDCQR 206

Query: 64  YQERQR 69
             E+++
Sbjct: 207 QLEKEK 212


>UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae
          RepID=A1F607_VIBCH
          Length = 76

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINR--------IRQKINAHGIPVYLCEACGNPIPEARRKIF 52
          MSD  D+A    ++     +N         I+++ +        C +CG+ IP+ R +  
Sbjct: 1  MSDLFDKAQERDQEFLALALNNHHAARRNMIQEQPDEDEEGNRYCLSCGSEIPKRRIEAQ 60

Query: 53 PGVTLCVECQAYQE 66
          P    CV CQ+ +E
Sbjct: 61 PEAVRCVSCQSRKE 74


>UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6I0P9_9BACT
          Length = 136

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M +  D A           +++   ++         CE CG  I E R    P   LC++
Sbjct: 56  MGEGVDLALLEMRNRMKRSVDQALLRLEEGSYGN--CEDCGGEIEEKRLMAMPFAQLCIK 113

Query: 61  CQAYQERQRK 70
           CQ  +E   K
Sbjct: 114 CQRKKEELEK 123


>UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS
          Length = 120

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 2   SDEADEAY----SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           SD+ D       S  +   +  I     +I         C  CG  IPE R +  P   +
Sbjct: 48  SDDMDRKMLESLSAKDLRCLQQIESALLRIEQGRYGK--CADCGESIPEDRLRAIPYSLM 105

Query: 58  CVECQAYQERQRKHY 72
           C+ECQ+ +E +R+ +
Sbjct: 106 CIECQSARESKRRAF 120


>UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella
          RepID=Q0HYS5_SHESR
          Length = 68

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D         E            K          C  CG+ IPE RR+   GV LCV CQ
Sbjct: 5  DLVTREQLRAEHRFEQQRKAQAAKPVP--PSATDCAECGDEIPEGRRQAILGVRLCVTCQ 62

Query: 63 AYQERQ 68
           ++E Q
Sbjct: 63 TWRESQ 68


>UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria
           RepID=A4SHJ5_AERS4
          Length = 128

 Score = 46.3 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 1   MSDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           M+DE D A     +                +    ++IN        CE+CG+ I   R 
Sbjct: 43  MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGDFG--YCESCGDEISLKRL 100

Query: 50  KIFPGVTLCVECQAYQERQRKH 71
           +  P    CVECQ+ +E    H
Sbjct: 101 QARPESRFCVECQSTKEFNDTH 122


>UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Shewanella
          oneidensis RepID=Q8EDR9_SHEON
          Length = 71

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIR----QKINAHGIPVYLCEACGNPIPEARRKIFPGVT 56
          M D+ D A  V +Q     ++R R    ++ + +      C  CG  I   R    P   
Sbjct: 1  MIDQFDRAQEVEQQFRDNALSRQRKHKVEQPDINNKGERCCLDCGVVIEARRLVFMPTAV 60

Query: 57 LCVECQAYQER 67
           CVECQ  +ER
Sbjct: 61 RCVECQTAKER 71


>UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae
           RepID=A4X6U9_SALTO
          Length = 132

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D A S+   +                     CE CG  IP  R +IFP  T CV C+ 
Sbjct: 66  ERDTAQSLLRTILDRRAQFEHALTRLEEGTYGFCEGCGASIPVERLEIFPSATTCVTCKQ 125

Query: 64  YQERQR 69
            +ER+ 
Sbjct: 126 TRERRA 131


>UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
          RepID=Q2SPX6_HAHCH
          Length = 78

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D+A  + E+L  + + R R            C  C + IP  R++   GV+ CVEC+
Sbjct: 4  DILDQAAELQERLNASALARQRAGSALGQPSRAHCIDCEDAIPPLRQQ-LGGVSRCVECE 62

Query: 63 AYQERQRKH 71
           Y +  ++ 
Sbjct: 63 DYYQHAQRQ 71


>UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2
           Tax=Betaproteobacteria RepID=A1K6D2_AZOSB
          Length = 135

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           I   R++I        +C  CG  IP AR +  P  T CV CQ+  ER
Sbjct: 76  IEAARERIAEG--EAGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121


>UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD
          Length = 213

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 7   EAYSVTEQLTMTG----INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
              +V E+L        +     +I         CE+CG PIP  R +  P    CV+C+
Sbjct: 58  RNQAVGERLRDERALADVEDALSRIRQGTYGQ--CESCGRPIPPDRLEAIPTTRRCVDCE 115

Query: 63  AYQERQR 69
              E ++
Sbjct: 116 REVEARQ 122


>UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L3E3_9DELT
          Length = 131

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
           +D AD A + +++     +    +++                 +C+ CG  I  AR +  
Sbjct: 39  ADVADRATAESDRHLTILMRERDRQLIGEINEALARVKDGDYGICQECGEEIGLARLRAQ 98

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P  TLCV C++  E   + Y
Sbjct: 99  PTATLCVHCKSMLEEMGRPY 118


>UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155
           RepID=A6DK24_9BACT
          Length = 147

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E +      E + +  + +  ++++        C  C + IPEAR    P   LCV C+ 
Sbjct: 69  EINLNVMSDEGIKVQLVQQAIERLDEGKYGR--CVDCRDDIPEARLDAIPYAKLCVACKE 126

Query: 64  YQERQ 68
            +E Q
Sbjct: 127 TRESQ 131


>UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A3ZQT2_9PLAN
          Length = 134

 Score = 45.9 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE     +  E   +  I++  ++I   G     CE C   IP AR +  P  TLC++CQ
Sbjct: 54  DELSSQLAEVESRELAQIDKALERI--RGGSFGECEGCTCKIPTARLQALPYATLCIKCQ 111

Query: 63  AYQE 66
              E
Sbjct: 112 RELE 115


>UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus
          RepID=Y1497_HAEIN
          Length = 75

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPG 54
          M+D  D+     E L    +           +++A       C  CG PIP  R +  P 
Sbjct: 1  MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPF 60

Query: 55 VTLCVECQAYQE 66
             CV CQ   E
Sbjct: 61 AHRCVSCQQDWE 72


>UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis
           ortholog n=1 Tax=Clostridium acetobutylicum
           RepID=Q97H97_CLOAB
          Length = 200

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
            E+  +  I     K+   G    +CE CG PI E R +  P    CVECQ   
Sbjct: 69  NEEALLNKIGNAIDKVEHGGYG--ICEVCGKPISEERLEFVPYAENCVECQNKL 120


>UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas
          mendocina ymp RepID=A4XZG1_PSEMY
          Length = 72

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPG--VTLC 58
          M+D  D A           +      +         CE CG+PIP  R +         C
Sbjct: 1  MADAVDIANDRMLDELDRRLANHA--LARQCPVAEECEDCGDPIPFERVQALAKLPCLRC 58

Query: 59 VECQAYQERQ 68
          VECQ Y ER+
Sbjct: 59 VECQGYHERK 68


>UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella
           thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA
          Length = 251

 Score = 45.5 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A     Q+ +  I    Q I         C  CG  IP  R +  P  TLC+EC+   
Sbjct: 63  DLALRDNVQVQLRKIEDALQSIAEGTYG--YCRRCGREIPRERLEAIPETTLCLECRRKM 120

Query: 66  ERQRKHYA 73
           E +   ++
Sbjct: 121 EGKADKHS 128


>UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus
          SB RepID=Q2LQQ9_SYNAS
          Length = 86

 Score = 45.5 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGI---------------PVYLCEACGNPIPEA 47
          DE D A           +    ++ + +                    +C  CG  I  A
Sbjct: 2  DEIDHAQQHEAMHREIALREHFRRRDNYSERGRNPGLHPKGAGPGERRICRDCGEEIQPA 61

Query: 48 RRKIFPGVTLCVECQAYQERQRKH 71
          R    P    C+ECQ  +ER+ +H
Sbjct: 62 RLAAMPFAVRCIECQGIKERRERH 85


>UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7
           Tax=Cystobacterineae RepID=A7H9X1_ANADF
          Length = 120

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINA------------HGIPVYLCEACGNPIPEAR 48
           + DE D A S   + T + I R+R +                     +CE C   I   R
Sbjct: 39  LPDEIDLASS---EYTQSMIFRLRDREKFLLAKIDKALARIENGTFGICERCEEEISVKR 95

Query: 49  RKIFPGVTLCVECQAYQERQRKHY 72
            +  P  TLC+ C+  QE++ K +
Sbjct: 96  LEARPVTTLCIRCKEEQEQKEKSF 119


>UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM
          12804 RepID=A9ID32_BORPD
          Length = 94

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 4  EADEAYSVTEQLTMTGINRIRQKINAH--GIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          + + A  + E      +  +R +++    G     C  CG+ I  AR  + PG   C++C
Sbjct: 21 QYELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDC 80

Query: 62 QAYQERQRKHYA 73
          Q   E+Q+  +A
Sbjct: 81 QTAHEKQQTRHA 92


>UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15
          RepID=Q52PP5_9CAUD
          Length = 77

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60
          +DE+D A  + E      I ++ +        V   C  C   IP+ R     G   C+ 
Sbjct: 5  TDESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIH 62

Query: 61 CQAYQERQRKHY 72
          CQ   E  +++Y
Sbjct: 63 CQTKFEFNQRNY 74


>UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1
          RepID=B0ZSI9_9CAUD
          Length = 75

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPV--YLCEACGNPIPEARRKIFPGVTLC 58
          MSD AD A     +L      R  ++  A         C  CG  I   RRK  P    C
Sbjct: 1  MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60

Query: 59 VECQAYQERQRKHY 72
            CQ + +R  K Y
Sbjct: 61 FGCQEFVDRTAKGY 74


>UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales
           RepID=C1DXT7_SULAA
          Length = 144

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
             ++ T+  I+   +KI++      +CE CG  I E R +  P V LC++C   +E 
Sbjct: 56  QADRETLYLIDLALRKIDSGIYG--ICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110


>UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales
           RepID=A7K6F3_VIBSE
          Length = 208

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTM--------TGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52
            D  D A    E              I +I + ++      +  CE+CG  I   R +  
Sbjct: 67  PDPVDRASQEEEFSLELRNRDRERRLIKKIEKTLDKIKEDDFGFCESCGVEIGVRRLEAR 126

Query: 53  PGVTLCVECQAYQERQRKH 71
           P   LC++C+   E + K 
Sbjct: 127 PTADLCIDCKTLAEIKEKQ 145


>UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W4E4_DESAS
          Length = 231

 Score = 44.7 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  +    + I        +C+ CG  I  AR    P  TLC EC+  Q
Sbjct: 63  DFALRDDAMLKIRAVEDALKNIEMGKYG--ICDICGKEIGYARLTALPRTTLCKECKEAQ 120

Query: 66  ER 67
           ER
Sbjct: 121 ER 122


>UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria
           RepID=DKSA_HAEIN
          Length = 145

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY----------LCEACGNPIPEARRKI 51
            D AD A    E       NR R++     I              C+ CG  I   R + 
Sbjct: 64  PDPADRATQEEEFSLELR-NRDRERKLMKKIEATLKKLDTDDFGYCDCCGEEIGIRRLEA 122

Query: 52  FPGVTLCVECQAYQERQRKHYA 73
            P   LC++C+   E + K  A
Sbjct: 123 RPTADLCIDCKTLAEIREKQVA 144


>UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria
           RepID=Q2LSS1_SYNAS
          Length = 150

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
            D  D A   +++     +    +K+ A               LCE CG PI E R    
Sbjct: 69  PDPTDRASLESDRNFELRMRDRERKLIAKMQEAIKRIDEGEFGLCEVCGGPISEKRLMAR 128

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC++C+  QE+  K
Sbjct: 129 PVTTLCIDCKTKQEKLEK 146


>UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii
           DSM 11347 RepID=B5YGE3_THEYD
          Length = 129

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           +S++       T +  +  I    +K+        +CE CG+ IPE R KI P    C +
Sbjct: 56  LSEDISLKQLSTHRDILKKIEEALRKLEEGTYG--ICEMCGDEIPEERLKILPFAIYCRD 113

Query: 61  CQAYQERQRK 70
           CQ   E   K
Sbjct: 114 CQEKIEMIEK 123


>UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter
           RepID=A1VXK8_CAMJJ
          Length = 120

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A S   +  +  I     KI        +CE+C + I   R K+ P    C+ C+ 
Sbjct: 53  QIDFAISTNLKEELIEIEDSLDKIKNGTYG--ICESCDDEIDSQRLKVKPHARYCITCRQ 110

Query: 64  YQERQRKH 71
             E+ +KH
Sbjct: 111 IAEQGKKH 118


>UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8
           Tax=Deltaproteobacteria RepID=A1AL35_PELPD
          Length = 118

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
            D  D A   +++     I    +K+                 +CE CG+ I EAR K+ 
Sbjct: 39  PDPTDRATQESDRNFELRIRDRERKLINKIKEALSRIDSGEFGICEECGDEIGEARLKVR 98

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC+ C+   E++ K
Sbjct: 99  PVTTLCINCKLEAEKKEK 116


>UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales
           RepID=D0LZD2_HALO1
          Length = 124

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 1   MSDEADEAYSVTEQ--------LTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKI 51
           ++DE D A S + Q           + +N++   +   G   + +CE C  PI + R + 
Sbjct: 43  LADEMDLASSESYQSFEFRLRGREKSLLNKLDLALRKLGEGTFGICEVCEEPIGKKRLEA 102

Query: 52  FPGVTLCVECQAYQERQRKHY 72
            P  TLC++C+  QER  + +
Sbjct: 103 RPETTLCIQCKEAQERDERVF 123


>UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          3655 RepID=A4NCL4_HAEIN
          Length = 78

 Score = 43.9 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAH------GIPVYLCEACGNPIPEARRKIFPG 54
          M+D  D+      Q+        R    +             C+ CG  IP+AR    P 
Sbjct: 1  MTDILDQLVERESQIEALQQAARRINPLSAEAIQQIAEDGRNCDECGELIPKARLLAQPF 60

Query: 55 VTLCVECQAYQERQRK 70
             CV+CQA  E+  K
Sbjct: 61 ARCCVDCQALLEKTNK 76


>UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1
          Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK
          Length = 72

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D A  +  +    GI   + +    G     C+ CG  I E  R+   GV  C+ CQ   
Sbjct: 5  DWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEI-EKERRAIKGVKRCIFCQERY 63

Query: 66 ER 67
          ER
Sbjct: 64 ER 65


>UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LEV8_RALME
          Length = 123

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           I   R ++        +C  C  PIP  R + +P    C  CQ   E++R
Sbjct: 72  IAAARGRMTLG--SYAICRECEEPIPFERLQAYPTAKRCTACQREHEQKR 119


>UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae
          RepID=C5S4P2_9PAST
          Length = 77

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQK------INAHGIPVYLCEACGNPIPEARRKIFPG 54
          MSD+ D      EQL    +    +       I    +    C  CG PIP  R +  P 
Sbjct: 1  MSDDVDRIMEQDEQLLSLQLAPHLENQLSDDEIEQIALSGRDCIECGLPIPIQRLRAVPF 60

Query: 55 VTLCVEC 61
             C+ C
Sbjct: 61 AVRCICC 67


>UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HSA8_9FIRM
          Length = 227

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  +    +K+ A      +C+ CG  I   R +  P    C+ C+   
Sbjct: 63  DLALRDNAHLLLEQVEHALEKVAAGNYG--ICDNCGREIGIERLQAIPYAARCIVCEKKY 120


>UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1
           RepID=A2SLK5_METPP
          Length = 122

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE D       Q  +  ++   Q++N        CE CG PI   R +  P    C++CQ
Sbjct: 55  DELDITLISHWQRELDEVSAALQRLNTGSYG--HCERCGEPIGLPRLRALPEARHCLDCQ 112

Query: 63  AYQER 67
              +R
Sbjct: 113 EQADR 117


>UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM
          Length = 119

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCV 59
           M D     Y   +Q T T +  +R  +       +  C+ CGN IP AR    P  T CV
Sbjct: 42  MPDVEGMTYRSWKQRTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCV 101

Query: 60  ECQAYQERQRKH 71
            C + +E +   
Sbjct: 102 HCMSAREERGAQ 113


>UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C120_SPHTD
          Length = 130

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 16  TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
               I R   K++        CE C  PIP  R +  P    C++CQA  +R++
Sbjct: 74  RKVLIERAITKMDQGEYG--YCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125


>UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2
           Tax=Cystobacterineae RepID=Q1D0G7_MYXXD
          Length = 130

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 22  RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           +   K+         CE CG+ IP  R +  P    CV CQ  ++
Sbjct: 71  KALGKLRDDPDAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115


>UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2
           RepID=C0QJK4_DESAH
          Length = 114

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           S   +EA     ++T++ + R   +I        LC AC  PIP AR  I P   LCV+C
Sbjct: 51  SKSMNEAALKRARITLSKLERALARI--GSPDFGLCSACEEPIPFARLMILPETELCVKC 108


>UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776
           RepID=C1ZKC1_PLALI
          Length = 152

 Score = 43.2 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 10  SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           +  E   +  INR    I      V  C+ C   IP AR +  P  T+CVECQ  QE
Sbjct: 59  AALETRELMQINRALALIEEGHYGV--CQKCSKAIPLARLQAVPFTTVCVECQRRQE 113


>UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4
          Length = 242

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 4   EADEA-YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           E D A    +EQL    I+   + I         CE CG  IP  R +  P    C++  
Sbjct: 62  EKDIALNEHSEQLLDE-IDNALKAIEEGSYGK--CEVCGTDIPYERLEAIPNARRCIQHA 118

Query: 63  AYQERQRK 70
             +    K
Sbjct: 119 EEKSVSNK 126


>UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria
           RepID=A5EW31_DICNV
          Length = 143

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           E+  +  I++  ++I         CE C   I   R +  P   LC++C+   ER+ K +
Sbjct: 80  ERKLLRKIDKALERIKQGHFG--YCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF 137


>UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9
          Length = 127

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 3   DEAD----EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
           D  D    EA S  E+  +  IN+   +I+ +      C AC   I   R    P   LC
Sbjct: 55  DNMDGNNLEALSSVEKKKLHLINQALYRISQNTYGN--CLACDKSITRERLVAIPYAFLC 112

Query: 59  VECQAYQERQRK 70
           + CQ  +E++ K
Sbjct: 113 ISCQTKKEKKGK 124


>UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268
           RepID=C8PIH5_9PROT
          Length = 118

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
           +D+ D A   T+      +N  +QK                  LCE+CG  I   R K+ 
Sbjct: 40  ADDFDVASMNTDLSIEYSLNVNQQKAFLEIESALKRIENGTYGLCESCGEQISLERLKVN 99

Query: 53  PGVTLCVECQAYQERQRKH 71
           P   LC+ C+   E+Q + 
Sbjct: 100 PEARLCISCKEQAEKQNRS 118


>UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UR73_RHOBA
          Length = 140

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE +      E   +  I     +          CE CG PIP  R K  P    C+ C+
Sbjct: 53  DELNSQLVEVESRELLAIEEAIARFEEGRFG--DCEDCGKPIPLNRLKAIPYAVDCINCR 110

Query: 63  AYQERQR 69
              ER+ 
Sbjct: 111 RAAERET 117


>UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter
          actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD
          Length = 72

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTM--TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          M+D  D+     E +           Q+          C  CG  I  +R K  P    C
Sbjct: 1  MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60

Query: 59 VECQAYQERQRK 70
          + CQ   E  +K
Sbjct: 61 ISCQQLHEESQK 72


>UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfonatronospira thiodismutans ASO3-1
           RepID=C0GTL3_9DELT
          Length = 243

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A     +  +  I+    ++        +C++CG  I EAR +  P    C  C    E 
Sbjct: 57  ALDSQARSELNHIDHALDRMIIGNYG--ICDSCGQEISEARLQAVPWARYCRVCVNKAEE 114

Query: 68  QR 69
           + 
Sbjct: 115 KT 116


>UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis
           vadensis ATCC BAA-548 RepID=D1N407_9BACT
          Length = 133

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E +      E   +  I    +++         C+ CG PI E R  I P    CV+C+
Sbjct: 64  HEMELQLLSEEGDVLRLIEDAIKRLVDGEYGK--CQECGEPISEGRLAIRPYAVYCVKCK 121

Query: 63  AYQERQRKH 71
              E+Q  H
Sbjct: 122 EMHEKQGWH 130


>UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF
          Length = 124

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 2   SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           +D  D   S+     E   +  INR  +KI        +C+  G  IP AR    P  T+
Sbjct: 51  TDTFDRTISLEVTTKEYELLRQINRALEKIEESSYG--ICDVSGEEIPLARLMAIPYATM 108

Query: 58  CVECQAYQER 67
            V+ Q+  E+
Sbjct: 109 TVKAQSQFEK 118


>UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia
           RepID=A4XKS6_CALS8
          Length = 209

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 18  TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
             I +   KI         C +C   IP  R    P    C+ECQ   E++ 
Sbjct: 75  ELIEKALSKIEKGNFG--YCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRE 124


>UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magnetospirillum
           magneticum AMB-1 RepID=Q2W8C2_MAGSA
          Length = 128

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D+ D A    E      +  +  ++        +C+ C +PI   R  + P    C  C 
Sbjct: 52  DDIDCAAERIEAFRDVALKAVLNRMTGPR-SSGICKTCYDPIEPQRIAVNPHARHCSFCA 110

Query: 63  AYQERQRKH 71
           A +E+ ++ 
Sbjct: 111 AEEEQAQRQ 119


>UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD
          Length = 118

 Score = 42.0 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           E+  +  I +  ++I         CE C  PI   R +  P  TLC++C+  QER+ K
Sbjct: 61  ERKLIMKIRQALERIEQGTFG--ECECCEEPIGAERLRARPVTTLCIDCKTEQERKEK 116


>UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium
           RepID=A0Q071_CLONN
          Length = 206

 Score = 42.0 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 3   DEADEAYSVTEQLTMTGINRI-RQKINAHGIPVY--------LCEACGNPIPEARRKIFP 53
             AD      ++     + +   +K++     +Y        +C  C N IP+ R +  P
Sbjct: 49  HPADIGQEFLDKAKGIALEKAELEKLHEISESLYDMEHGTYGICRICKNQIPDDRLEAVP 108

Query: 54  GVTLCVECQAYQER 67
               CV C+  Q++
Sbjct: 109 YAKYCVHCKNNQDK 122


>UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SPR7_HAHCH
          Length = 107

 Score = 42.0 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D+   A  V  ++ +  + +  Q++      V  C ACG  IPE+R ++ P   LCV C 
Sbjct: 46  DDVLNALKVETEIEINQVKKALQRLQQGEYGV--CVACGEDIPESRLQVLPFAELCVSCA 103

Query: 63  AYQE 66
           +  E
Sbjct: 104 SKSE 107


>UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ
          Length = 213

 Score = 41.6 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           LC  CG  IP  R    P    CV CQ   E + 
Sbjct: 87  LCIDCGQKIPVDRLFANPVAIRCVACQKRVEERT 120


>UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae
           RepID=Y250_AQUAE
          Length = 145

 Score = 41.6 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           +CE CG  IPE R    P    C +C    ER+   Y
Sbjct: 85  ICERCGEEIPEPRLCAIPWTRYCAKCAEEVERESGTY 121


>UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria
           RepID=Q1MS84_LAWIP
          Length = 133

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +           E+  +  I    Q+I+     V  CE CG+ I   R K
Sbjct: 52  ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDGTYGV--CEDCGDDIGTPRLK 109

Query: 51  IFPGVTLCVECQAYQE 66
             P   LC+ C++ QE
Sbjct: 110 ARPVTKLCINCKSRQE 125


>UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora
           aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO
          Length = 103

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           CE CG  IP AR +I P    CV CQ  +
Sbjct: 75  CERCGQDIPTARLEILPSARFCVPCQQRR 103


>UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus
           RepID=C6D536_PAESJ
          Length = 234

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A    E L +T I++  + ++        C ACG PIP+ R +  P    CVE    Q
Sbjct: 64  DLALLENEDLHLTRISQALEAMDNGTYGQ--CRACGKPIPDERLEALPDSLYCVEHAPRQ 121

Query: 66  ERQRKH 71
           E   + 
Sbjct: 122 ETSHRQ 127


>UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12E87_POLSJ
          Length = 134

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D A    EQ+    + R+    N        C  CG  I   R    P    C  CQA 
Sbjct: 65  VDHAAHELEQVLA-ALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQAI 123

Query: 65  QERQRK 70
            E +R+
Sbjct: 124 HEHERQ 129


>UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia
           multivorans RepID=A9AKZ2_BURM1
          Length = 256

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A    +   +  I R +Q++         C  C  P+  AR +  P    C  CQA
Sbjct: 185 DVDHALIGMKLAELRAIRRAQQRMVDGSYG--DCIDCDGPVGYARLRARPTAERCTHCQA 242

Query: 64  YQERQ 68
             ER+
Sbjct: 243 LYERR 247


>UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Mariprofundus
          ferrooxydans PV-1 RepID=Q0EWC9_9PROT
          Length = 73

 Score = 41.2 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAH----GIPVYLCEACGNPIPEARRKIFPGVT 56
          M+D  D      E      ++R+R +             +C  C   IP AR    P   
Sbjct: 1  MADPCDMGSEREEISRQEALDRVRYRPLEAPLLDEEYRRICRDCECLIPSARLAAVPHAV 60

Query: 57 LCVECQAYQE 66
           C  CQ   E
Sbjct: 61 RCASCQEEHE 70


>UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE
          Length = 149

 Score = 41.2 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 2   SDEADEAYSVTEQL-----------TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           SDE D +    E+             +  I     +++     V  C  C  PI   R  
Sbjct: 59  SDEGDLSQQHHEEWIFLNRNTIDMKLLREIADALHRMDTGHYGV--CPECEEPISAKRLD 116

Query: 51  IFPGVTLCVECQAYQERQ 68
             P    CV CQ     +
Sbjct: 117 AVPWARYCVTCQEKIAAR 134


>UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LGY5_SYNFM
          Length = 257

 Score = 41.2 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 18  TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             I+    KI        +CE+CG+ I   R +  P   LCV+C    E++
Sbjct: 65  EQIDLALGKIAIGEYG--ICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113


>UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VG86_9BACT
          Length = 148

 Score = 41.2 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           +E+  +  +N   Q+I+       +CE CG  I E R +I P  T CV C+   E +++
Sbjct: 88  SEREKIRQLNEALQRISDGTYG--ICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKR 144


>UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS
          Length = 157

 Score = 41.2 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           C+ CG  IP+AR    P  T CV C+   +++ 
Sbjct: 98  CKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130


>UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72G22_DESVH
          Length = 176

 Score = 41.2 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 2   SDEADEAYSVTEQLTM-TGINRIRQKINA--------HGIPVYLCEACGNPIPEARRKIF 52
           +DE + A  + E     T ++R   +I                +CE CG  IP AR K  
Sbjct: 87  ADENEFASRLAEMALSVTLLHRAEHRIGLLENALRRLEAYDYGVCEGCGEDIPVARLKAS 146

Query: 53  PGVTLCVECQAYQE 66
           P   LCV CQ   E
Sbjct: 147 PATRLCVFCQQESE 160


>UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia
           RepID=B4D0A5_9BACT
          Length = 233

 Score = 41.2 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 2   SDEADEAYSV----TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           SD  D  +++     EQ  +  I    ++I      V  CE  G PI   R +  P    
Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRIELGTYGV--CEMSGKPIAHPRLEALPFARY 187

Query: 58  CVECQAYQERQRK 70
            VECQ+  E+Q K
Sbjct: 188 TVECQSQIEKQGK 200


>UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A882_GEMAT
          Length = 127

 Score = 41.2 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 1   MSDEADEAYSVTEQLTMT--------GINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D+  +A    +              +++  +++         C  CG  I   R    
Sbjct: 49  MADQGTDAMEREKAFLFASKEGRFLWHLDQALRRLYKAPATFGKCHQCGEDIAFERLDAL 108

Query: 53  PGVTLCVECQAYQERQRKH 71
           P    C+ C+  +E  +K 
Sbjct: 109 PNARYCIACKQREEDAKKS 127


>UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57
          Length = 151

 Score = 41.2 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY----------LCEACGNPIPEARRKI 51
            D  D A    E       NR R++     I              CE+CG  I   R + 
Sbjct: 70  PDPVDRAAQEEEFSLELR-NRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEA 128

Query: 52  FPGVTLCVECQAYQERQRKHYA 73
            P   LC++C+   E + K  A
Sbjct: 129 RPTADLCIDCKTLAEIREKQMA 150


>UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LMB8_SYNFM
          Length = 122

 Score = 40.9 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIFP 53
           DE D     TEQ  +  ++   +++    +             CE CG  I   R K  P
Sbjct: 42  DEVDRTSIRTEQEFLLHMHCRNERLVQEILNGLQRIRTGDFGVCEECGKDIELNRLKAHP 101

Query: 54  GVTLCVECQAYQERQRK 70
             T C++C+   ER+ +
Sbjct: 102 SATQCIKCKKAAERKAR 118


>UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R5D7_9PLAN
          Length = 150

 Score = 40.9 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           E   +  I+R  +K+ A    +  C++CG PI   R +  P    C+EC    ER+ 
Sbjct: 62  ESRELMQIDRAIEKMRAGRYGL--CDSCGGPIKLIRLQAVPYAIECIECARRDERRE 116


>UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9
           Tax=Campylobacterales RepID=A0RMM0_CAMFF
          Length = 122

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGI-NRIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52
           SDE D A    + +    I  + R ++N     +         +C+ C + I   R K+ 
Sbjct: 40  SDEFDFASINADAILEHSISAKQRSELNEIDESLKKIANRTYGICDMCEDEIDIERLKVK 99

Query: 53  PGVTLCVECQAYQERQRKH 71
           P    C+ C+   E+  K+
Sbjct: 100 PNAKYCITCREIIEKNNKN 118


>UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L9K5_9DELT
          Length = 120

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 2   SDEADEAYSVTEQ--------LTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52
           +D AD A + +++             I +I++ ++      Y  C  CG  I  AR K  
Sbjct: 39  ADPADRATAESDRAFTLRLRDRERRLIKKIKEALDRIDEGTYGECVECGEDISVARMKAR 98

Query: 53  PGVTLCVECQAYQE 66
           P  TLC++C++ QE
Sbjct: 99  PVTTLCIKCKSRQE 112


>UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria
           RepID=B5EG80_GEOBB
          Length = 118

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
            D  D A   +++     I    +K+                 +CE C   I EAR K  
Sbjct: 39  PDPTDRATQESDRTFELRIRDRERKLIVKIQEALARIEAGTFGICEVCEEDISEARLKAR 98

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC++C+  QE++ +
Sbjct: 99  PVTTLCIDCKMEQEKKER 116


>UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YK78_THEYD
          Length = 123

 Score = 40.9 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           E+  +  I +  +KIN       +CEACG  IP  R +  P   LC+EC+  QE   K
Sbjct: 64  ERKLLKKIEKTLEKINNGTYG--ICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119


>UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium
           retbaense DSM 5692 RepID=C8X580_DESRD
          Length = 115

 Score = 40.9 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           LCE CG  I   R    P   LC+ECQ   ER
Sbjct: 82  LCEECGEEIGVPRLVACPSARLCIECQEQLER 113


>UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8EWK7_ARCB4
          Length = 123

 Score = 40.5 bits (93), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 3   DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D+ D A  V++                 I    +KI        +C+ CG  IP  R K 
Sbjct: 42  DDLDYAELVSDSFIEGMITNHQLDELKQIEEALKKITLGTYG--ICDMCGINIPLGRLKA 99

Query: 52  FPGVTLCVECQAYQERQR 69
            P    C EC+   E++ 
Sbjct: 100 KPFAKFCTECRTVYEQEN 117


>UniRef50_B7J8S5 Putative uncharacterized protein n=1 Tax=Acidithiobacillus
          ferrooxidans ATCC 23270 RepID=B7J8S5_ACIF2
          Length = 104

 Score = 40.5 bits (93), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPGV 55
          SD  D A  + EQ     ++  RQ      K +        C  C + IP  R +    V
Sbjct: 6  SDILDIAADLAEQERAWRVSVARQAMQASEKPDEDVAGNRYCLDCADVIPPERVQAVQAV 65

Query: 56 TLCVECQAYQERQR 69
            CV C   +E++ 
Sbjct: 66 R-CVVCAGIREKKA 78


>UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella
           koreensis DSM 16069 RepID=C7R8Q8_KANKD
          Length = 120

 Score = 40.5 bits (93), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M     EA    ++  +  + +  ++I         C  C  PI   R ++ P   LC++
Sbjct: 52  MDQAMSEASVERDKKRLVAVRKALKRIEEGQYG--FCLECDEPISAKRLEVAPETELCLD 109

Query: 61  CQAYQERQRK 70
           CQ+++E   +
Sbjct: 110 CQSFKEEHDR 119


>UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6C001_9PLAN
          Length = 141

 Score = 40.5 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + +   +  E   +  I R    I         CE+C   IP AR K  P    CV C  
Sbjct: 44  DLESHLAEIEYKELMQIRRAISLIQEGRYG--HCESCNKNIPIARLKAVPYAMFCVSCAE 101

Query: 64  YQE 66
            +E
Sbjct: 102 QRE 104


>UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas
           arsenicoxydans RepID=A4G7K6_HERAR
          Length = 106

 Score = 40.5 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
             + D+A    E + +  I    ++I+ H   +  C  CG  I  AR +  P    C +C
Sbjct: 40  PTDVDDAMIKMELVELADIEAAHRRIDNHQYGL--CIDCGCTIDYARLQASPTAKRCTQC 97

Query: 62  QAYQERQ 68
           Q   E++
Sbjct: 98  QRLHEQR 104


>UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter
           RepID=C6E710_GEOSM
          Length = 130

 Score = 40.1 bits (92), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M  +A  A +   +  +T +   ++++         CE CG  I   R ++ P    CV 
Sbjct: 57  MLSDAGLAIADIRRNQLTALEEAQRRVEQGTYGK--CENCGEVIDIQRLRLMPFAAYCVS 114

Query: 61  CQAYQERQRK 70
           CQ  +E   K
Sbjct: 115 CQKEKEGPGK 124


>UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=B8J371_DESDA
          Length = 120

 Score = 40.1 bits (92), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +           E+  +  I     +I+       +CE CG+ I   R K
Sbjct: 39  ADPADRATAESDRAFTLRIRDRERRLIRKIQAALTRIDDGTYG--ICEDCGDDISIPRLK 96

Query: 51  IFPGVTLCVECQAYQE 66
             P   LC+ C+A QE
Sbjct: 97  ARPVTRLCINCKAKQE 112


>UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP
          Length = 212

 Score = 40.1 bits (92), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A     +  +  +     +++        C+ CG  I   R +  P  T C EC+A  
Sbjct: 67  DFALRENARFRLLAVEDALARMDRGTYGR--CDECGVDIDLERLEAVPFTTKCRECKARA 124

Query: 66  ERQR 69
           E + 
Sbjct: 125 EGKD 128


>UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae
           RepID=B4U7Z4_HYDS0
          Length = 118

 Score = 40.1 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            CE CG  IP  R K  P  ++C+ C+  +E
Sbjct: 83  YCEVCGAEIPYERLKARPVTSMCIRCKELEE 113


>UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4
           Tax=Anaeromyxobacter RepID=A7HEW6_ANADF
          Length = 130

 Score = 40.1 bits (92), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +   +  I+R   K+ +      LCE C   I   R  + P  T C  CQA  E +
Sbjct: 63  QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTEPR 118


>UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68
           Tax=Alphaproteobacteria RepID=A7HW84_PARL1
          Length = 146

 Score = 40.1 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52
            D AD A S TE+         ++K+ +                CE  G PI   R    
Sbjct: 64  PDIADRASSETERSLELRTRDRQRKLVSKIDAAIRRIDEGTYGYCEETGEPISLKRLDAR 123

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P  TL +E Q   ER+ K Y
Sbjct: 124 PIATLSIEAQERHERREKVY 143


>UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog
           n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS
          Length = 138

 Score = 40.1 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
           E+     I     +I         C+  G PI   R    P  +   E Q   ER  KH
Sbjct: 76  ERAEAMAIKAALVRIEEDAYG--WCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKH 132


>UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL
          Length = 121

 Score = 40.1 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 9   YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
            S  ++  +  +     +I         C +CG+ I   R +  P    C+ CQ   E+
Sbjct: 58  QSANDRNLLQMVEGALIRIGEGTYG--ECVSCGSEINSKRLEAVPWARYCIGCQEKIEK 114


>UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas
           RepID=A5W685_PSEP1
          Length = 154

 Score = 40.1 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D    +  QL    ++RI  +          C+  G PI   R  I P    C+E Q  
Sbjct: 91  IDRDQRLLPQL-EMALDRIADE------SFGWCDDSGEPIGLKRLLISPTTKYCIEAQER 143

Query: 65  QERQRKH 71
            E+  +H
Sbjct: 144 HEQLDRH 150


>UniRef50_UPI00016C3CE0 transcriptional regulators, TraR/DksA family protein n=1
           Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CE0
          Length = 253

 Score = 40.1 bits (92), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           S E D      E            +I+        C +CG  + E R    P V  CV C
Sbjct: 59  SQELDTTLLENETYLRDEAVAALGRIDDGTFGR--CTSCGGDVGEERLDALPYVRQCVAC 116

Query: 62  QAYQE 66
              ++
Sbjct: 117 AQAEQ 121


>UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM
          Length = 137

 Score = 39.7 bits (91), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D    A      L+   I+   +++         CE  G+ I   R  + P    CV+ Q
Sbjct: 61  DIIMSAQKRNSLLSE--IDEALERMEQGVYG--YCEETGDEIGFGRLDLEPTARYCVDVQ 116

Query: 63  AYQERQRK 70
              +++ +
Sbjct: 117 ERLDKKNR 124


>UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfomicrobium baculatum DSM 4028
           RepID=C7LTL7_DESBD
          Length = 133

 Score = 39.7 bits (91), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 33  PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
              +CE CG  I + R    P    C+ECQ   +R
Sbjct: 81  SYGICEMCGEHIADRRLLAIPSALFCIECQEMIDR 115


>UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZJ9_DESAD
          Length = 115

 Score = 39.7 bits (91), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFPGVTLCVEC 61
           + + +  + I + RQ+I      +           CE CG  IP AR    P    CV C
Sbjct: 50  LNQGINKSSIAQSRQRILNLEDALNRLEKDSFFGECEECGEDIPLARLLTLPESRYCVYC 109

Query: 62  QAYQE 66
             + E
Sbjct: 110 AEHLE 114


>UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae
           RepID=Q221D7_RHOFD
          Length = 124

 Score = 39.7 bits (91), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           + E + A    +   +  ++   ++I      +  C  CG  IP AR    P    C+ C
Sbjct: 55  ARELEFALDARDSEELDRLDAALRRIEDGSYGL--CVDCGVGIPAARLHAAPDALRCIAC 112

Query: 62  QAYQERQR 69
           Q   E+ +
Sbjct: 113 QEKLEKAQ 120


>UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3
           Tax=Proteobacteria RepID=Q0AHN9_NITEC
          Length = 135

 Score = 39.7 bits (91), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           +  EA  + +   +  I     +I      +  C  CG P+   R   +P    C  CQ 
Sbjct: 64  DITEAEVIRDIGEVRDIVAAEDRIATGKYGL--CIDCGEPVRYKRLDAYPTAKRCFTCQV 121

Query: 64  YQER 67
            +ER
Sbjct: 122 RRER 125


>UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia
           RepID=B2UIX3_RALPJ
          Length = 120

 Score = 39.7 bits (91), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
            ++ ++   V  +  +  +N  R+++  H     +C  CG  IP  R +  P    C+ C
Sbjct: 54  GEQTNDVMLVRYRSELEQLNAARERMQQHSYG--ICVDCGEAIPFLRLQAQPTAMRCLPC 111

Query: 62  QAYQERQ 68
           Q   ER+
Sbjct: 112 QTACERR 118


>UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65
           Tax=Betaproteobacteria RepID=Q12EM6_POLSJ
          Length = 450

 Score = 39.7 bits (91), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E                 I +   +I++       C+  G PI   R  
Sbjct: 369 PDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGDYG--YCDETGEPIGVGRLI 426

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P   L +E Q  +E ++K +
Sbjct: 427 ARPTANLSLEAQQRRELKQKMF 448


>UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58
           Tax=Betaproteobacteria RepID=Q21SV6_RHOFD
          Length = 429

 Score = 39.7 bits (91), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E                 I +   +I++       C+  G  I   R  
Sbjct: 348 PDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGDYG--YCDETGEAIGVGRLL 405

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P   L +E Q  +E ++K +
Sbjct: 406 ARPTANLSLEAQQRRELKQKMF 427


>UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6C0K2_DESAD
          Length = 116

 Score = 39.3 bits (90), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           +CE CG  I  AR K  P    CV CQ+  E
Sbjct: 78  ICEDCGEEIALARIKANPTTRFCVSCQSRME 108


>UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UB56_9DELT
          Length = 116

 Score = 39.3 bits (90), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIR-QKINAHGIPVYL--------CEACGNPIPEARRKIF 52
            DE D A  + +Q     + R R  +I  +   +          C+ CG+PI  AR K  
Sbjct: 35  PDETDFATQLAQQGVNLAMQRRRMARIKEYECAIKRLRETDYGTCDECGDPIGLARLKAN 94

Query: 53  PGVTLCVECQAYQERQR 69
           P   LC+ CQ+  E + 
Sbjct: 95  PSARLCIVCQSAAEEED 111


>UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium
           ochraceum DSM 14365 RepID=D0LUD2_HALO1
          Length = 127

 Score = 39.3 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           E   +  I+   +++ A  I    CE CG  I   R    P  TLC++C++ +E+
Sbjct: 64  ETFLLNKIDAALERLKAGTID--ECEECGGEISVQRLIARPVTTLCIDCKSEREQ 116


>UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria
           RepID=A8PLZ9_9COXI
          Length = 295

 Score = 39.3 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKI 51
           + D +D A    E           +K+                  C +CG  I   R + 
Sbjct: 213 LPDMSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGHYGFCSSCGVEIGIRRLEA 272

Query: 52  FPGVTLCVECQAYQERQRKH 71
            P   LC++C+   E + K 
Sbjct: 273 RPTANLCIDCKTLDEIREKQ 292


>UniRef50_A3IED4 DnaK suppressor protein n=2 Tax=Bacillaceae RepID=A3IED4_9BACI
          Length = 150

 Score = 39.3 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53
             AD A  +T+QLT   I+  R                     C  CG  IP  R +  P
Sbjct: 41  HPADNASDLTDQLTEMAIDEHRGDNAEEIKEALQAMADGTYGECTVCGKEIPIGRLEAMP 100

Query: 54  GVTLCVECQAYQE 66
               CVE    +E
Sbjct: 101 QALTCVEHAEKKE 113


>UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT
          Length = 123

 Score = 39.3 bits (90), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           E+  +  I++  ++I         C+ACG PI   R +  P  TLC+EC+  QE++ +
Sbjct: 64  ERRLIKKIDQAIERIQNGEFG--ECDACGGPISVKRLEARPVTTLCIECKTAQEQEER 119


>UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12HC6_POLSJ
          Length = 130

 Score = 39.3 bits (90), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            +      +Q  +  I + ++++         C  CG PIP  R K  P  + C+ CQ  
Sbjct: 60  LEHVDLQRDQEELRAIQQAQERMADGSYGG--CIDCGQPIPFERLKAQPSASRCIACQTR 117

Query: 65  QER 67
            E+
Sbjct: 118 FEQ 120


>UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK
           suppressor protein n=2 Tax=Brachyspira
           RepID=C0QW50_BRAHW
          Length = 121

 Score = 39.3 bits (90), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 10  SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           S  E+  +  +N   ++I         C  C   I E R    P    CV C +  E ++
Sbjct: 59  SQKEKDKLDMLNNALKRIEEGTYGK--CIDCKEEINEERLTALPYTLRCVNCMSKYEDKK 116

Query: 70  K 70
           +
Sbjct: 117 R 117


>UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD
          Length = 130

 Score = 39.3 bits (90), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D    +  +  +  + R  QKI      V  C+  G PIP+ R +  P     VE Q 
Sbjct: 63  EMDATVGLQTRRRLEDVERALQKIEEGTYGV--CDDTGEPIPKGRLEAMPEAIRTVEAQQ 120

Query: 64  YQERQRK 70
             +R R+
Sbjct: 121 RHDRVRR 127


>UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium
           minutum Pei191 RepID=B2KE71_ELUMP
          Length = 258

 Score = 39.3 bits (90), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 18  TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
             I    +KI+        CE C   +P+ R K  P    CV CQ+ +E
Sbjct: 210 DQIESALRKIDKGIYGK--CENCRQLLPKKRIKALPFARYCVVCQSSKE 256


>UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C5L2_SPHTD
          Length = 132

 Score = 39.3 bits (90), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           C  CG  I  AR K  P  T C+ CQ + E + 
Sbjct: 98  CIDCGEMIDPARLKALPTATRCLRCQTHFEYRT 130


>UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter
           RepID=B3EAN1_GEOLS
          Length = 218

 Score = 39.3 bits (90), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGIN-RIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52
            D  D+A S  ++     +N R R+K+++    +         +CE C   IP  R K+ 
Sbjct: 119 GDIYDQASSERDRELGLLLNDREREKLHSIDEALLRIAEGEYGICEECDEDIPMGRLKVL 178

Query: 53  PGVTLCVECQAYQERQRKH 71
           P    CV+C++  E+ +  
Sbjct: 179 PFTRHCVKCKSDLEKFQAQ 197


>UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter
           RepID=Q39WX5_GEOMG
          Length = 130

 Score = 39.3 bits (90), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVEC 61
           D  ++       +    + R+ + +       Y  C+ CG  I E R ++ P    C+ C
Sbjct: 56  DTLEDTGMAVADIRRQELTRMDEALGRLKEGRYGFCDECGAEIDEGRLRVAPYAPCCISC 115

Query: 62  QAYQE 66
           Q  +E
Sbjct: 116 QTRRE 120


>UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis
           ATCC 14672 RepID=UPI0001AEFD73
          Length = 111

 Score = 39.3 bits (90), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           +D+         +  +T I+    +++        C+ CG  IP  R +I P    CV C
Sbjct: 49  ADDLLMMQKYAVRQALTDIDAAFTRLDEGTYGT--CQGCGRDIPVERLEILPYARCCVPC 106

Query: 62  QA 63
           Q 
Sbjct: 107 QQ 108


>UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZG84_BREBN
          Length = 257

 Score = 39.3 bits (90), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           E D A    ++ T+  I++  Q++      +  C  CG  IP  R +  P    C E
Sbjct: 63  EKDLALDSLDRETLKEIDQALQRMEEGTYGL--CTVCGEQIPVERLEALPQSQTCKE 117


>UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551
           RepID=A3RXC3_RALSO
          Length = 224

 Score = 38.9 bits (89), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E                 + +  Q+I+        C+  G PI   R  
Sbjct: 143 PDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEGNYG--YCDETGEPIGVPRLL 200

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P  TL +E Q  +E+++K +
Sbjct: 201 ARPTATLTLEAQERREKRQKLF 222


>UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus
           RepID=Q473A0_RALEJ
          Length = 124

 Score = 38.9 bits (89), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 3   DEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D+AD A     Q                I   R+++ A       C  CG  IP +R + 
Sbjct: 44  DDADLAEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGT--CTDCGEAIPYSRLQA 101

Query: 52  FPGVTLCVECQAYQER 67
           +P    C +CQ   ER
Sbjct: 102 YPTARRCADCQRGHER 117


>UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I8K1_9CLOT
          Length = 204

 Score = 38.9 bits (89), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            A    E+  +  I+   + I+        C+ CG  I + R    P    C+EC+  
Sbjct: 64  RALEANERALLDKIDDAVRAIDEGSYGK--CQKCGKEIDKERLDFLPYALNCIECEDV 119


>UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula
           baltica RepID=Q7UEL7_RHOBA
          Length = 121

 Score = 38.9 bits (89), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           + E     + +E   +  I    +++         CE CG  IP  R ++ P    CV C
Sbjct: 52  ASELTSRMAESESRELADIEEALERLRDGTFG--DCEDCGKSIPMNRLQVVPHARRCVRC 109

Query: 62  QAYQE 66
           Q   E
Sbjct: 110 QKASE 114


>UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia
           profundicola AmH RepID=B9L783_NAUPA
          Length = 117

 Score = 38.9 bits (89), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           + ++  +  IN   +KI+       +CE C +PI EAR KI P    C+ C+   E++ K
Sbjct: 60  INQKKELEEINDALKKIDEGTFG--ICEMCEDPIQEARLKIKPYAKYCIICREIIEKEGK 117


>UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 Tax=Desulfovibrio
           vulgaris RepID=A1VGY3_DESVV
          Length = 113

 Score = 38.9 bits (89), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
            +E    T +  + G+    +++         C  CG  IP AR    P  + CV C  
Sbjct: 55  VNEVALATARKRLAGLEYAVKRLGDDDPEYGYCVECGEAIPFARLMSMPEASRCVNCAE 113


>UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2
           Tax=Planctomycetaceae RepID=D2R7B0_9PLAN
          Length = 123

 Score = 38.9 bits (89), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 18  TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             I    ++I A    V  C  CG  IP+AR ++ P    CV+C      +
Sbjct: 75  EQIEAALERIEAGAYGV--CTECGCKIPKARLEVLPYTAHCVKCAEKASPR 123


>UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis
           HTCC2594 RepID=Q2NBT1_ERYLH
          Length = 104

 Score = 38.9 bits (89), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINA-HGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           DEA    + +    I ++R  +          C  CG PIP+ R +  P  T C++C
Sbjct: 47  DEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKC 103


>UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI
          Length = 119

 Score = 38.9 bits (89), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           I R  +KI        +CE C  PI   R K  P    C+ C+   E+
Sbjct: 68  IERALEKIENGEYG--ICEMCDEPISIQRLKAKPHARFCIICREIVEK 113


>UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema
           denticola RepID=Q73KX9_TREDE
          Length = 119

 Score = 38.9 bits (89), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 14  QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           Q   + + RIR+           C  C   IPE R K  P    C+ CQA  E++
Sbjct: 68  QKIDSALERIREGKYGK------CITCKEQIPEDRLKALPYALKCIHCQAKSEKK 116


>UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family protein n=1
           Tax=Plesiocystis pacifica SIR-1 RepID=A6FZV7_9DELT
          Length = 130

 Score = 38.9 bits (89), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M+     + +      +  I      I+       +CE C  PI   R ++ P V++CV+
Sbjct: 49  MTQSIASSRNRERAQKLAAIREALLLIDEDPEEYGMCEDCEEPIKRRRLELMPWVSVCVQ 108

Query: 61  CQAYQERQRK 70
           CQ  +ER  +
Sbjct: 109 CQEKRERDGR 118


>UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879
           RepID=C3XG00_9HELI
          Length = 122

 Score = 38.5 bits (88), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D++     Q  M  I+    K +       +CE C + I   R +  P    C+ C+  
Sbjct: 54  FDDSMLERNQKEMKEISASLAKFDDGIYG--ICEMCEDEIGIERLQAKPHARFCINCREI 111

Query: 65  QERQRKH 71
            E+  K 
Sbjct: 112 YEKSEKQ 118


>UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSA0_ACIC1
          Length = 113

 Score = 38.5 bits (88), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 3   DEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
           D AD A +       Q     +    Q+I      +  C +CG P+PE R +  P    C
Sbjct: 45  DLADHARATALLEVAQEQRRQVLEALQRIENGTYGL--CVSCGAPLPEGRLEAKPEAARC 102

Query: 59  VECQAYQE 66
           + CQA  E
Sbjct: 103 LSCQAKLE 110


>UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231
           RepID=A4BMT6_9GAMM
          Length = 132

 Score = 38.5 bits (88), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           I    +K+         C  CG  I   R +  P V  C  CQ   E++ 
Sbjct: 77  IEAALRKLADGSYG--YCMDCGEAIAAQRLQANPAVARCYACQTRFEQEE 124


>UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes
           RepID=Q7MQQ3_WOLSU
          Length = 113

 Score = 38.5 bits (88), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 36  LCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           +C+ C  PIP  R    P  T+CV+C   +
Sbjct: 83  ICQICDEPIPYKRLFALPEATICVDCANER 112


>UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V318_9AQUI
          Length = 133

 Score = 38.5 bits (88), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
          I+   ++I+        CE CG PI E R +  P  TLC E     E+
Sbjct: 53 IDEALERISEGTYG--YCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98


>UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2
           Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU
          Length = 131

 Score = 38.5 bits (88), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 37  CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
           C  CG  I   R  ++P    CV CQ   E+   H
Sbjct: 91  CIDCGGEIGFDRLMVYPTAQRCVRCQEVHEKTYMH 125


>UniRef50_A1VFA5 Transcriptional regulator, TraR/DksA family n=3 Tax=Desulfovibrio
           vulgaris RepID=A1VFA5_DESVV
          Length = 118

 Score = 38.5 bits (88), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY--------LCEACGNPIPEARRKIFPG 54
           D+ +     +       I +++ ++ +    +          C+ CG+ I   R    P 
Sbjct: 41  DDVEHRQVFSMAEQRANIEQLKGRLRSLRTALARTDDEEFGWCDECGDAIGVQRLLSVPT 100

Query: 55  VTLCVECQAYQERQ 68
             LC+ C   +E Q
Sbjct: 101 TRLCIACARRREDQ 114


>UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J2D3_DESDA
          Length = 130

 Score = 38.5 bits (88), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 2   SDEADEAYSVTEQLTMTG-INRIRQKIN--------AHGIPVYLCEACGNPIPEARRKIF 52
           SDEAD A  +           R  Q+I+                C  CG  IP  R    
Sbjct: 34  SDEADAASHMEAAYIACCRARRSVQRIHDLERLLHLLRHNGPRQCVDCGEDIPLKRLVAA 93

Query: 53  PGVTLCVECQAYQER 67
           PG   C  CQ  +ER
Sbjct: 94  PGTVRCFSCQQQEER 108


>UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT
          Length = 123

 Score = 38.5 bits (88), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 16  TMTGINRIRQKINAHGIPVYL-----CEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
                NR RQ I+   + +       C  C   I E R  + P   LCVECQ   E   K
Sbjct: 56  LQEKRNRERQMIDEALVSLEEGTYGICVECNTEISEKRLAVMPFARLCVECQEKIELLEK 115


>UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum
          RepID=A4TVR6_9PROT
          Length = 76

 Score = 38.2 bits (87), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D+ D A    +      +  +  +  +      +C ACG  I   R +  P    C EC 
Sbjct: 2  DDIDCAAERIDAFNAVALQAVLAR-TSGAPSSGICRACGCDIEPERLRATPHARHCKECA 60

Query: 63 AYQERQRKHY 72
          A  E + + +
Sbjct: 61 AEIEAENRRH 70


>UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio
           sp. JE062 RepID=B6R7R7_9RHOB
          Length = 118

 Score = 38.2 bits (87), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M+   D   +   Q     + RI+++          C  CG  IPEAR ++ P    CV 
Sbjct: 59  MAQANDRQRARELQRIDGALQRIKEEEYG------FCLECGEDIPEARLRVDPAALYCVS 112

Query: 61  CQAY 64
           C   
Sbjct: 113 CAKL 116


>UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8ESP2_OCEIH
          Length = 224

 Score = 38.2 bits (87), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 9   YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
              TE+     IN     I        +C  CG  IP  R +  P    CV+
Sbjct: 68  QEHTEKELED-INAALHAIEEGTYG--ICTVCGEDIPHERLEAIPTTDRCVK 116


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI            88   1e-16
UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter...    78   8e-14
UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri...    77   1e-13
UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    77   2e-13
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    76   2e-13
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    76   3e-13
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    76   3e-13
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    76   4e-13
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    75   5e-13
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    75   7e-13
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    75   9e-13
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    74   1e-12
UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B...    74   1e-12
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          74   2e-12
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    73   2e-12
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    73   2e-12
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    73   3e-12
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    72   5e-12
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    72   5e-12
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    71   1e-11
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    71   1e-11
UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro...    71   2e-11
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    70   2e-11
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    70   2e-11
UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=...    70   2e-11
UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=...    70   3e-11
UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ...    70   3e-11
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    70   3e-11
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    70   3e-11
UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ...    70   3e-11
UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob...    69   4e-11
UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ...    69   5e-11
UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ...    68   8e-11
UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr...    68   8e-11
UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr...    68   8e-11
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    68   9e-11
UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep...    68   9e-11
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    68   9e-11
UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R...    68   1e-10
UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12...    67   2e-10
UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7...    67   2e-10
UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo...    67   2e-10
UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1...    66   2e-10
UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu...    66   2e-10
UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom...    66   2e-10
UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ...    66   3e-10
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    66   3e-10
UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...    66   3e-10
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...    66   3e-10
UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc...    66   3e-10
UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ...    66   4e-10
UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba...    66   4e-10
UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ...    66   4e-10
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    66   5e-10
UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte...    66   5e-10
UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1...    65   5e-10
UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo...    65   5e-10
UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ...    65   6e-10
UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=...    65   7e-10
UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ...    65   7e-10
UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ...    65   7e-10
UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ...    65   9e-10
UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ...    65   1e-09
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    65   1e-09
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...    64   1e-09
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    64   1e-09
UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5...    64   1e-09
UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD      64   2e-09
UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy...    64   2e-09
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    64   2e-09
UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc...    64   2e-09
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    64   2e-09
UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ...    63   2e-09
UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID...    63   2e-09
UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ...    63   2e-09
UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm...    63   3e-09
UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10...    63   4e-09
UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ...    63   4e-09
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    63   4e-09
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...    62   4e-09
UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact...    62   4e-09
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    62   5e-09
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    62   5e-09
UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop...    62   6e-09
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    62   6e-09
UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot...    62   7e-09
UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib...    62   7e-09
UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT...    61   7e-09
UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi...    61   8e-09
UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu...    61   9e-09
UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ...    61   1e-08
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  61   1e-08
UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto...    61   1e-08
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   61   2e-08
UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a...    61   2e-08
UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom...    61   2e-08
UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ...    61   2e-08
UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil...    60   2e-08
UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ...    60   2e-08
UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact...    60   3e-08
UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=...    60   4e-08
UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n...    59   4e-08
UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae...    59   4e-08
UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto...    59   4e-08
UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass...    59   5e-08
UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ...    59   5e-08
UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium...    58   7e-08
UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ...    58   8e-08
UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteur...    58   9e-08
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    58   9e-08
UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ...    57   1e-07
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    57   1e-07
UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono...    57   2e-07
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    57   2e-07
UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum...    57   2e-07
UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete...    57   2e-07
UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p...    57   2e-07
UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ...    56   3e-07
UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1...    56   3e-07
UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon...    55   7e-07
UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1...    55   9e-07
UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph...    55   9e-07
UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ...    54   1e-06
UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3...    54   1e-06
UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi...    54   2e-06
UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuens...    52   7e-06

Sequences not found previously or not previously below threshold:

UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5...    71   1e-11
UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6...    67   2e-10
UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana...    65   6e-10
UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ...    64   1e-09
UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo...    64   2e-09
UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria...    64   2e-09
UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte...    63   2e-09
UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ...    63   2e-09
UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ...    63   3e-09
UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ...    62   5e-09
UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253...    62   7e-09
UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ...    62   7e-09
UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact...    61   1e-08
UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm...    61   1e-08
UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ...    61   1e-08
UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68...    60   2e-08
UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi...    60   2e-08
UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=...    60   2e-08
UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35...    59   4e-08
UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ...    59   5e-08
UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ...    59   5e-08
UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ...    59   6e-08
UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R...    58   6e-08
UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ...    58   6e-08
UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr...    58   7e-08
UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ...    58   8e-08
UniRef50_Q6SHS2 DnaK suppressor protein n=1 Tax=uncultured marin...    58   9e-08
UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ...    58   9e-08
UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ...    58   1e-07
UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri...    58   1e-07
UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1...    58   1e-07
UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ...    57   1e-07
UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim...    57   1e-07
UniRef50_Q31G85 Transcriptional regulators, TraR/DksA family n=1...    57   2e-07
UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10...    57   2e-07
UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B...    57   2e-07
UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther...    57   2e-07
UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami...    57   2e-07
UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3...    57   2e-07
UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro...    57   2e-07
UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 ...    56   3e-07
UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term...    56   3e-07
UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ...    56   3e-07
UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11...    56   4e-07
UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ...    56   4e-07
UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re...    56   4e-07
UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr...    56   4e-07
UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa...    56   5e-07
UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3...    56   5e-07
UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ...    56   5e-07
UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu...    55   5e-07
UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress...    55   6e-07
UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ...    55   6e-07
UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ...    55   6e-07
UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14...    55   6e-07
UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida...    55   6e-07
UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br...    55   7e-07
UniRef50_Q0A892 Transcriptional regulators, TraR/DksA family n=1...    55   8e-07
UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=...    55   8e-07
UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac...    55   9e-07
UniRef50_Q0VNX0 DnaK suppressor protein homolog, DksA/TraR famil...    55   9e-07
UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ...    55   9e-07
UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ...    55   9e-07
UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ...    55   9e-07
UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 ...    55   1e-06
UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=...    55   1e-06
UniRef50_Q1GI88 Transcriptional regulators TraR/DksA family n=26...    55   1e-06
UniRef50_Q2GI38 DnaK suppressor protein n=9 Tax=Anaplasmataceae ...    55   1e-06
UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1...    55   1e-06
UniRef50_A0LCU1 Transcriptional regulator, TraR/DksA family n=2 ...    54   1e-06
UniRef50_Q2SLB9 DnaK suppressor protein n=7 Tax=Gammaproteobacte...    54   1e-06
UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ...    54   1e-06
UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil...    54   1e-06
UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ...    54   1e-06
UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens...    54   1e-06
UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ...    54   1e-06
UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ...    54   1e-06
UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati...    54   2e-06
UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ...    54   2e-06
UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ...    54   2e-06
UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi...    54   2e-06
UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ...    54   2e-06
UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4...    54   2e-06
UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ...    53   2e-06
UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subt...    53   2e-06
UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ...    53   2e-06
UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum ...    53   2e-06
UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ...    53   2e-06
UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ...    53   2e-06
UniRef50_A0AZX7 Transcriptional regulators, TraR/DksA family n=3...    53   2e-06
UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID...    53   2e-06
UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto...    53   3e-06
UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1...    53   3e-06
UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot...    53   3e-06
UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1...    53   3e-06
UniRef50_B8H0C0 DnaK suppressor protein homolog n=110 Tax=Bacter...    53   3e-06
UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1...    53   3e-06
UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacte...    53   3e-06
UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID...    53   3e-06
UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9...    53   3e-06
UniRef50_UPI0001AEC064 DnaK suppressor protein n=1 Tax=Alteromon...    53   4e-06
UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 ...    53   4e-06
UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ...    53   4e-06
UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ...    53   4e-06
UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini...    53   4e-06
UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2...    52   5e-06
UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ...    52   5e-06
UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 ...    52   5e-06
UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magneto...    52   5e-06
UniRef50_B1J6V4 Transcriptional regulator, TraR/DksA family n=4 ...    52   6e-06
UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep...    52   6e-06
UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax...    52   6e-06
UniRef50_D1C0D4 Transcriptional regulator, TraR/DksA family n=2 ...    52   7e-06
UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1...    52   7e-06
UniRef50_P42408 Uncharacterized protein yteA n=2 Tax=Bacillus su...    52   7e-06
UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ...    52   7e-06
UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac...    52   7e-06
UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge...    52   7e-06
UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 ...    52   7e-06
UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega...    51   8e-06

>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score = 87.7 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE
Sbjct: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60

Query: 61 CQAYQERQRKHYA 73
          CQAYQERQRKHYA
Sbjct: 61 CQAYQERQRKHYA 73


>UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria
           RepID=A6T2Z9_JANMA
          Length = 310

 Score = 78.0 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGIN----RIRQKINAHGIP-----VYLCEACGNPIPEARRKIF 52
            D AD A    E            ++ +K+    +         CE  G PI   R    
Sbjct: 229 PDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGEYGWCEETGEPIGVPRLLAR 288

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P  TL +E Q  +E ++K Y
Sbjct: 289 PTATLSLEAQQRRELKQKLY 308


>UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae
          RepID=Q3ZL39_ESCBL
          Length = 76

 Score = 77.3 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+   D A  +  +     +N+  +++         C  C  PIP AR +  P    CV 
Sbjct: 1  MTKAFDRASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVTCVT 60

Query: 61 CQAYQERQRKH 71
          CQA +E +RKH
Sbjct: 61 CQAIREHRRKH 71


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 76.9 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D A    E L    I + R K        ++C +C   IPE RR   PGV  CV 
Sbjct: 1  MPDLMDIAQERQEMLLAMQIAKARSKPITA--SAFICASCEAEIPEQRRITVPGVIFCVA 58

Query: 61 CQAYQERQRKHY 72
          CQ   E ++KHY
Sbjct: 59 CQQLHEEKKKHY 70


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 76.5 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A    ++     I+  R + +   +  ++CE C  PIPEARR+  PGV  CV 
Sbjct: 1  MADAMDLAQLREQEDRERHISNARSRRHE--VSAFICEECDAPIPEARRRAIPGVQCCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQEILELKSKHY 70


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 76.5 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE D A  ++E+     +             +  CE CG PIPE RR+  PG T CV 
Sbjct: 1  MADEIDLAQEISERHLEAALAGHLDH-KPAAESLTHCEECGRPIPEGRRQAQPGCTRCVR 59

Query: 61 CQAYQE 66
          CQ+  E
Sbjct: 60 CQSGIE 65


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 76.1 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D      E+     I++ R +        +LCE+C  PIPEARR   PGV LCV 
Sbjct: 1  MADVMDLVQQRVEEERERHIHKARSR--QAAPSRFLCESCNGPIPEARRAALPGVELCVT 58

Query: 61 CQAYQERQRKHY 72
          CQ  +E +  HY
Sbjct: 59 CQEIKELKSLHY 70


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 76.1 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 39/71 (54%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSD AD+A  V EQ     +   +  IN        C+ C + IPEARR+  PGV LCV+
Sbjct: 1  MSDIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVD 60

Query: 61 CQAYQERQRKH 71
          C + QE + +H
Sbjct: 61 CASLQEIKGRH 71


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 75.3 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A +  ++     I+  R++  +     +LCE C  PIPEARR   PGV LC+ 
Sbjct: 1  MADFIDLAQAREQEDRERHIHHARRRPAS--PSRFLCEECDAPIPEARRMAVPGVALCIT 58

Query: 61 CQAYQERQRKH 71
          CQ   E + KH
Sbjct: 59 CQEIAEMKNKH 69


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 74.9 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D+ D A  + E+     + ++R K  A    +  CE C  PIPEARR+   G T C++
Sbjct: 1  MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 59 CQQIYEYKQKGY 70


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 74.6 bits (182), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K       ++ C  CG PIPE RR+  PGVT C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQNRFKPAT-TPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59

Query: 61 CQAYQERQRK 70
          CQA  ER+++
Sbjct: 60 CQAIIERRQR 69


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 74.2 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M DE D      EQ     I + R K       ++ C  CG PIPE RR+  PG+T C E
Sbjct: 1  MPDEIDRDQEFNEQRLEEMIEQSRFKP-GSAPSLFHCRVCGKPIPEKRRQTLPGITTCKE 59

Query: 61 CQAYQERQR 69
          CQ   ER  
Sbjct: 60 CQEKLERHS 68


>UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH
          Length = 73

 Score = 74.2 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS E D A   ++ L    I  +  +    G+  + CE CG  IPE RR    G T C +
Sbjct: 1  MSKEMDLACEQSQLLLDKQIKAVTGR--YIGVSAFECEDCGREIPEKRRIAVMGCTRCAD 58

Query: 61 CQAYQERQRKHY 72
          CQ   E + KHY
Sbjct: 59 CQTVYELKSKHY 70


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 73.8 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D+ D A     ++  T + R   K +  G+ ++ CE C +PIPEARR   PGV LCV CQ
Sbjct: 2  DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61

Query: 63 AYQERQRK 70
             E+  +
Sbjct: 62 TRIEQLAR 69


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 73.4 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1  MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MSD+ D   A +VT       I  +R++++   + +  CE CG+ I E RR+I PGV LC
Sbjct: 1  MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60

Query: 59 VECQAYQERQRK 70
          V CQ   E   +
Sbjct: 61 VGCQEVAEHWEQ 72


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 73.4 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 34/72 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE D      E L    I   RQ+    G     CE CGN IP  R++  PGV  C E
Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74

Query: 61 CQAYQERQRKHY 72
          CQ   E ++K Y
Sbjct: 75 CQRVLEIRQKQY 86


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 73.0 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A  + E      + + R       +    CE C  PIPE RR++  GVT CV 
Sbjct: 1  MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57

Query: 61 CQAYQERQRKHY 72
          CQ   E Q++++
Sbjct: 58 CQQRFEIQQRNF 69


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 72.2 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGI------PVYLC--EACGNPIPEARRKIF 52
          M D+ D A    +      +     +                C  + CG PIPE RRK  
Sbjct: 1  MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60

Query: 53 PGVTLCVECQAYQERQR 69
          PGV  CVECQ   E++ 
Sbjct: 61 PGVKFCVECQQRLEKKG 77


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 72.2 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A + T +  ++   R   +++A    +  CE CGNPI +AR + FP  TLCVEC+ 
Sbjct: 176 EHELALAATAREVLSQTERALDRLDAGTYGL--CENCGNPIGKARMQAFPRATLCVECKQ 233

Query: 64  YQERQ 68
            QER+
Sbjct: 234 KQERR 238


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 71.1 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ DEA ++ E+     I R   +I   G     C  CG PI EARRK  P  T CV+
Sbjct: 1  MTDQLDEAQALEERERDDCIARAAGQIK--GHGATHCVVCGEPIDEARRKAMPSATRCVD 58

Query: 61 CQAYQERQRKHY 72
          CQ  +ER  + +
Sbjct: 59 CQESRERWSRSH 70


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A    + L    + + R +I    +    CE C NPIPE RR    G   C+ 
Sbjct: 1  MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59

Query: 61 CQAYQERQR 69
          CQ+ +E++R
Sbjct: 60 CQSLREQRR 68


>UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58
           Tax=Betaproteobacteria RepID=Q21SV6_RHOFD
          Length = 429

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E                 I +   +I++       C+  G  I   R  
Sbjct: 348 PDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGDYG--YCDETGEAIGVGRLL 405

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P   L +E Q  +E ++K +
Sbjct: 406 ARPTANLSLEAQQRRELKQKMF 427


>UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria
           RepID=DKSA_BUCBP
          Length = 151

 Score = 70.7 bits (172), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 2   SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D  D A    E           +  +  I +  +K+         CE+CG  I   R +
Sbjct: 70  PDPIDRAVQEEEFSFELRHRDRERKLIEKIEKTLKKVENKDFG--YCESCGIEIGIKRLE 127

Query: 51  IFPGVTLCVECQAYQERQRKH 71
             P   LC++C+   E + K 
Sbjct: 128 ARPTANLCIDCKTLSEIREKQ 148


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A      +    I   R  +         C  C   IPE RR+  PGV+ CV 
Sbjct: 1  MADTIDMAQERQALMLEKQIAHARPVVTQA--SAQFCADCDGEIPEVRRRAIPGVSRCVA 58

Query: 61 CQAYQERQRKHY 72
          CQ   E Q++H+
Sbjct: 59 CQEVSEAQQRHF 70


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D A       T   I   R + +     +  C+ CG+PIPEARRK  PG T C++
Sbjct: 1  MPDPTDRAQEAAADYTRFSIEAARSRGSQST--LADCQDCGDPIPEARRKAVPGCTRCLD 58

Query: 61 CQAYQERQR 69
          CQ   E++R
Sbjct: 59 CQETYEQRR 67


>UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter
          arcticus 273-4 RepID=Q4FUG7_PSYA2
          Length = 66

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+AD A    +      ++R           +  C  CG  IP  R +   GVTLCV+
Sbjct: 1  MADDADRANDYVDLTMAHCLSRA---PKFDKPSLTECMECGEDIPAKR-QAMGGVTLCVD 56

Query: 61 CQAYQERQRK 70
          CQ+  E++ K
Sbjct: 57 CQSVFEKRGK 66


>UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas
          putida KT2440 RepID=Q88IG2_PSEPK
          Length = 72

 Score = 69.9 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A    +      ++            +  C  CG  IPE RR    G   C+E
Sbjct: 1  MADIADLANDRAQWHLDLVLSARL--PAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIE 58

Query: 61 CQAYQERQRKHYA 73
          CQ + E++   YA
Sbjct: 59 CQGFFEKKGARYA 71


>UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CWL7_HALOH
          Length = 228

 Score = 69.6 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D       Q+ +  +     ++      +  CE CG  I E R +  P  TLC  CQA
Sbjct: 60  EKDRGLRDNAQVLLNKVENALNRLEEGNYGL--CEKCGQEIREERLETIPYATLCERCQA 117

Query: 64  YQERQRKHY 72
            +E +  + 
Sbjct: 118 KEEGKDYNR 126


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 69.6 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          M D  D A  +  QLT   +     R K  A       C  CG+PIPEARR+   G   C
Sbjct: 1  MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60

Query: 59 VECQAYQERQRK 70
            CQ+  E+ ++
Sbjct: 61 THCQSDLEKMKR 72


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 69.6 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A +   +  +    R   +++A    V  CE CG PI +AR + FP   LCV+C+ 
Sbjct: 170 EHELALAAGSRERLEQTERALLRMDAGTYGV--CENCGKPIGKARMQAFPHAILCVDCKQ 227

Query: 64  YQERQ 68
             ER+
Sbjct: 228 KSERR 232


>UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R7U4_AMMDK
          Length = 176

 Score = 69.6 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  I    +++         CE+CG PIP  R +  P  TLC  C+  Q
Sbjct: 39  DLALREDALLKLQVIEDALRRLEEGTYG--YCESCGAPIPRERLEAVPYTTLCHACKERQ 96

Query: 66  ERQR 69
           E + 
Sbjct: 97  EAKG 100


>UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67Q17_SYMTH
          Length = 269

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D          +  I    Q+++       +CE CG PI   R K FP  T C+ CQ  +
Sbjct: 60  DLGLRSHMLRRIQEIESALQRMDQGTYG--ICEECGRPIDPERLKAFPSATTCITCQQRR 117

Query: 66  ERQRKHY 72
           E +   +
Sbjct: 118 EARPDRF 124


>UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7QCE7_CATAD
          Length = 275

 Score = 68.8 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A +   +  +    R   ++ A    V  CE+CG P+ + R + FP  TLC+ C+ 
Sbjct: 213 EHEMAIANNAREMLQQTERALARLAADTYGV--CESCGEPVGKYRLQAFPRATLCMSCKQ 270

Query: 64  YQERQ 68
            QER+
Sbjct: 271 KQERR 275


>UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus
           RepID=A5UPY9_ROSS1
          Length = 121

 Score = 68.0 bits (165), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D A     +  +  +N   ++++       +C  CG PIP  R +  P  TLCV CQ+
Sbjct: 56  ERDLALRSNARELLEQVNAALRRLDEGTYG--ICADCGEPIPIERLEALPYATLCVRCQS 113

Query: 64  YQERQRK 70
            +ER R+
Sbjct: 114 TRERARR 120


>UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1
          Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM
          Length = 73

 Score = 68.0 bits (165), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGI----PVYLCEACGNPIPEARRKIFPGVTLC 58
          DE D A    +      I    ++ +            C  CG  IP  R K  P V  C
Sbjct: 2  DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61

Query: 59 VECQAYQER 67
          V CQ  +ER
Sbjct: 62 VSCQDKKER 70


>UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales
           RepID=A7K6F3_VIBSE
          Length = 208

 Score = 68.0 bits (165), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52
            D  D A    E           +++                  CE+CG  I   R +  
Sbjct: 67  PDPVDRASQEEEFSLELRNRDRERRLIKKIEKTLDKIKEDDFGFCESCGVEIGVRRLEAR 126

Query: 53  PGVTLCVECQAYQERQRKH 71
           P   LC++C+   E + K 
Sbjct: 127 PTADLCIDCKTLAEIKEKQ 145


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 68.0 bits (165), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+DE +   S    L    I RIRQ++   GI    C+ CG P+P  RR++ PGV  CV 
Sbjct: 1  MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58

Query: 61 CQAYQERQRKHY 72
          CQ  QE Q +HY
Sbjct: 59 CQEVQEIQARHY 70


>UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7
          Length = 69

 Score = 68.0 bits (165), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A +   Q     +   + ++   G  +  C+ CG  IPEARR    G+  C  
Sbjct: 1  MADCFDRAQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIRCTP 59

Query: 61 CQAYQERQRK 70
          CQA  E+  +
Sbjct: 60 CQARFEKGGR 69


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 68.0 bits (165), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A  +  +     I   R  +   G+    CE CG PIP AR+   PG T CV+CQ
Sbjct: 2  DPFDRAQELEMEQREAAIAAARD-LVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQ 60

Query: 63 AYQERQRK 70
            +ER R+
Sbjct: 61 NRRERPRR 68


>UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT
          Length = 202

 Score = 67.6 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINA---------HGIPVYLCEACGNPIPEARRKIF 52
            D  D A    E +         +K+ A                CE+CG  I   R +  
Sbjct: 121 PDSLDRAAKEEEFMLELRKRERERKLIAKIDLSLKDLEDNLYGYCESCGVEIGIKRLEAR 180

Query: 53  PGVTLCVECQAYQERQRKH 71
           P  T C++C+   E + K 
Sbjct: 181 PTATKCIDCKTVDEIKEKQ 199


>UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12
          Tax=Desulfovibrio RepID=A1VE28_DESVV
          Length = 78

 Score = 67.2 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAH-----GIPVYLCEACGNPIPEARRKIFPGV 55
          M+D  D+A     +     I+  R ++ +            C  CG  IPEAR K  PG 
Sbjct: 6  MADIFDQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGC 65

Query: 56 TLCVECQAYQE 66
           LC EC    E
Sbjct: 66 GLCRECAEEME 76


>UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65
           Tax=Betaproteobacteria RepID=Q12EM6_POLSJ
          Length = 450

 Score = 67.2 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E                 I +   +I++       C+  G PI   R  
Sbjct: 369 PDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGDYG--YCDETGEPIGVGRLI 426

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P   L +E Q  +E ++K +
Sbjct: 427 ARPTANLSLEAQQRRELKQKMF 448


>UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7
           Tax=Actinomycetales RepID=A0LTP3_ACIC1
          Length = 527

 Score = 67.2 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E   A     +  +        +I         CE CGNPI + R +  P  TLCV C+
Sbjct: 466 HEMSLAN--NARDLLVQTEHALARIADGTYGR--CENCGNPINKLRLQANPRATLCVSCK 521

Query: 63  AYQERQ 68
             +ER+
Sbjct: 522 QREERR 527


>UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium
          extorquens AM1 RepID=C5B4E4_METEA
          Length = 73

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D    + E      +  IR +     +    C+ CG  IP  RR+  P    CV 
Sbjct: 1  MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60

Query: 61 CQAYQER 67
          CQ   ER
Sbjct: 61 CQTLAER 67


>UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella
           thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA
          Length = 251

 Score = 66.5 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A     Q+ +  I    Q I         C  CG  IP  R +  P  TLC+EC+   
Sbjct: 63  DLALRDNVQVQLRKIEDALQSIAEGTYG--YCRRCGREIPRERLEAIPETTLCLECRRKM 120

Query: 66  ERQRKHYA 73
           E +   ++
Sbjct: 121 EGKADKHS 128


>UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4
           RepID=B3DUR8_METI4
          Length = 249

 Score = 66.5 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A S+  Q   + I               +C+ CG PIP  R +  P     V+CQ 
Sbjct: 147 DRDFALSLLSQENDSLIEIDDSLKRIEDNTYGICQMCGKPIPIIRLQAIPYARFTVDCQR 206

Query: 64  YQERQRKHY 72
             E + K Y
Sbjct: 207 QLE-KEKMY 214


>UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D3H2_PELTS
          Length = 242

 Score = 66.5 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  I+R   KI         C+ CG  IP  R +  P    C +C+  +
Sbjct: 68  DFALRENAMLAVAAIDRALAKIENGTYGK--CDNCGREIPLERLEAVPSTVCCKKCKEAE 125

Query: 66  ERQRK 70
           E+  +
Sbjct: 126 EKNTR 130


>UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HSA8_9FIRM
          Length = 227

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  +    +K+ A      +C+ CG  I   R +  P    C+ C+   
Sbjct: 63  DLALRDNAHLLLEQVEHALEKVAAGNYG--ICDNCGREIGIERLQAIPYAARCIVCEKKY 120


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MS + D+A  + E+     ++   ++          C+ CG+ IPEARR+   G   C+E
Sbjct: 1  MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60

Query: 61 CQAYQERQRKHYA 73
          CQ   E  +  YA
Sbjct: 61 CQERIEHAKAQYA 73


>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D             I R R +I   G  +  CE CG PIP+ARR+  PGV LC+ CQ  +
Sbjct: 9  DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67

Query: 66 ERQRKHYA 73
          + Q+  Y 
Sbjct: 68 DLQKPAYT 75


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D      +      I R R ++   G  +  CE C   IPEARR+  PGV LCV+CQA  
Sbjct: 9  DAVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEH 67

Query: 66 ERQRKHYA 73
          +R+   Y+
Sbjct: 68 DRENAAYS 75


>UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales
           RepID=A1SL71_NOCSJ
          Length = 283

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +E+  +  I R   +I+     V  CE+CGNPI + R   FP  TLC+ C+  +ER+
Sbjct: 229 SERDKLAQIERALARIDDGTYGV--CESCGNPIGKMRLMAFPRATLCMTCKQREERR 283


>UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2J7_9PLAN
          Length = 148

 Score = 66.1 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE +   +  E   +  I+   +++ +       CE C  PIP  R +  P   +C++CQ
Sbjct: 53  DEINSQLAEVESRELAHIDTALERMRSGNYGA--CEGCNEPIPLLRLQALPYAVMCIKCQ 110

Query: 63  AYQER 67
              E+
Sbjct: 111 REAEK 115


>UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium
           modesticaldum Ice1 RepID=B0TGP7_HELMI
          Length = 238

 Score = 65.7 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A        +  I + +++I+       +CE C   IP+AR    P  TLC+ECQ+++
Sbjct: 62  DLATRDRFSRELDEIAKAKRRISEGIYG--ICERCHQKIPDARMAAMPTATLCIECQSHE 119

Query: 66  E 66
           E
Sbjct: 120 E 120


>UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W4E4_DESAS
          Length = 231

 Score = 65.7 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A      L +  +    + I        +C+ CG  I  AR    P  TLC EC+  Q
Sbjct: 63  DFALRDDAMLKIRAVEDALKNIEMGKYG--ICDICGKEIGYARLTALPRTTLCKECKEAQ 120

Query: 66  ER 67
           ER
Sbjct: 121 ER 122


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A  + E      ++    +IN + +    CE CG  IPE RR   PG   C ECQ
Sbjct: 2  DIIDTAAEIEELQRNAALSAH--RINRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQ 59

Query: 63 AYQERQRKHY 72
          +  E + K  
Sbjct: 60 SVIELKNKQR 69


>UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria
           RepID=A4SHJ5_AERS4
          Length = 128

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 1   MSDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           M+DE D A     +                +    ++IN        CE+CG+ I   R 
Sbjct: 43  MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGDFG--YCESCGDEISLKRL 100

Query: 50  KIFPGVTLCVECQAYQERQRKH 71
           +  P    CVECQ+ +E    H
Sbjct: 101 QARPESRFCVECQSTKEFNDTH 122


>UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V43_DESDG
          Length = 149

 Score = 65.3 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIF 52
            DE ++A  + E      +     +  A                CE CG+ I EAR K  
Sbjct: 61  PDENEQASRLAELTLDVALRGRLARQLAAVESALHRIATGGFGRCEECGDEIGEARLKAN 120

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P  TLC+ CQ  +E +    
Sbjct: 121 PTTTLCIHCQEDREAEAARR 140


>UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria
           RepID=DKSA_HAEIN
          Length = 145

 Score = 65.3 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52
            D AD A    E           +K+                  C+ CG  I   R +  
Sbjct: 64  PDPADRATQEEEFSLELRNRDRERKLMKKIEATLKKLDTDDFGYCDCCGEEIGIRRLEAR 123

Query: 53  PGVTLCVECQAYQERQRKHYA 73
           P   LC++C+   E + K  A
Sbjct: 124 PTADLCIDCKTLAEIREKQVA 144


>UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces
           RepID=D1X2L9_9ACTO
          Length = 248

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + + +   Q  +    R   ++ A    +  CE CG PI +AR + FP  TLCVE + 
Sbjct: 185 EHELSLAANAQEMLEQTERALARLEAGTYGL--CEICGKPIGKARMQAFPRATLCVEDKQ 242

Query: 64  YQERQR 69
            QER+ 
Sbjct: 243 KQERRG 248


>UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551
           RepID=A3RXC3_RALSO
          Length = 224

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQ-----------KINAHGIPVYLCEACGNPIPEARRK 50
            D AD A    E           +           +I+        C+  G PI   R  
Sbjct: 143 PDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEGNYG--YCDETGEPIGVPRLL 200

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P  TL +E Q  +E+++K +
Sbjct: 201 ARPTATLTLEAQERREKRQKLF 222


>UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3
           Tax=Propionibacterium acnes RepID=D1YA14_PROAC
          Length = 159

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 3   DEADEAYSVTEQLTMTGINR-----------IRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D  D   S  E+     + R             Q ++        CE+CG PI +AR + 
Sbjct: 85  DTIDVGSSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGT--CESCGEPIGKARLQA 142

Query: 52  FPGVTLCVECQAYQERQ 68
           FP  T+CV+C+  QER+
Sbjct: 143 FPRATMCVKCKQRQERR 159


>UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7
           Tax=Cystobacterineae RepID=A7H9X1_ANADF
          Length = 120

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 1   MSDEADEAYSV-----------TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           + DE D A S             E+  +  I++   +I        +CE C   I   R 
Sbjct: 39  LPDEIDLASSEYTQSMIFRLRDREKFLLAKIDKALARIENGTFG--ICERCEEEISVKRL 96

Query: 50  KIFPGVTLCVECQAYQERQRKHY 72
           +  P  TLC+ C+  QE++ K +
Sbjct: 97  EARPVTTLCIRCKEEQEQKEKSF 119


>UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2
           Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD
          Length = 222

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIFP 53
             AD A  V E+     I+                       LCE C   IP  R +  P
Sbjct: 45  HPADIATEVYERSRDVAIHDRLHHRIQAIDSALQRYEEGKYGLCEHCQKEIPLGRLEALP 104

Query: 54  GVTLCVECQAYQERQRKH 71
             T+C EC   +E + +H
Sbjct: 105 FTTVCTECSRLEEMEEQH 122


>UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6I0P9_9BACT
          Length = 136

 Score = 64.5 bits (156), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M +  D A           +++   ++         CE CG  I E R    P   LC++
Sbjct: 56  MGEGVDLALLEMRNRMKRSVDQALLRLEEGSYG--NCEDCGGEIEEKRLMAMPFAQLCIK 113

Query: 61  CQAYQERQRK 70
           CQ  +E   K
Sbjct: 114 CQRKKEELEK 123


>UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8
           Tax=Deltaproteobacteria RepID=A1AL35_PELPD
          Length = 118

 Score = 64.5 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52
            D  D A   +++     I    +K+                 +CE CG+ I EAR K+ 
Sbjct: 39  PDPTDRATQESDRNFELRIRDRERKLINKIKEALSRIDSGEFGICEECGDEIGEARLKVR 98

Query: 53  PGVTLCVECQAYQERQRKH 71
           P  TLC+ C+   E++ K 
Sbjct: 99  PVTTLCINCKLEAEKKEKR 117


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 64.5 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 1  MSDEA--DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS++   + A + T   T  GIN IR K+++      +CE CG  IP AR+   PGV LC
Sbjct: 1  MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60

Query: 59 VECQAYQERQRKHYA 73
            CQ  +E+Q  H A
Sbjct: 61 AACQDVKEKQDVHRA 75


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 9  YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
              +   +  INR R  ++        C  CG  IPEARR I PGV LCVECQA ++ +
Sbjct: 12 QEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVELCVECQAKEDAR 71

Query: 69 RKHYA 73
           K ++
Sbjct: 72 EKAFS 76


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D A    E+       R+  ++   G  +Y CE CG  IP ARR++ PGV  C+ CQ
Sbjct: 2  DIVDIANDYAERELA---ERLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQ 58

Query: 63 AYQE 66
           Y E
Sbjct: 59 EYLE 62


>UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium
           RepID=A3DD29_CLOTH
          Length = 212

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A  V E+  +  IN    K++        CE CG  I E R +  P   LC++C+ 
Sbjct: 61  ELNNALKVHEERLLEDINEALTKMDKGSFGK--CELCGKEIDEERLEALPYTRLCIDCEN 118

Query: 64  YQE 66
            +E
Sbjct: 119 AKE 121


>UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia
           RepID=A4XKS6_CALS8
          Length = 209

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 13/78 (16%)

Query: 3   DEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
             AD A  + E           +  +  I +   KI         C +C   IP  R   
Sbjct: 49  HPADIASDLFEVEKNMGLKADMKRKLELIEKALSKIEKGNFG--YCISCKKEIPFDRLLA 106

Query: 52  FPGVTLCVECQAYQERQR 69
            P    C+ECQ   E++ 
Sbjct: 107 IPYTEFCIECQKDMEKRE 124


>UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD
          Length = 75

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          +D  D A ++++      ++RI+      G+  + C  CG+ IP+ RR++  GVT CV+C
Sbjct: 6  ADPLDRAAALSQAHLEVSLSRIK---KFEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62

Query: 62 QAYQERQRKHY 72
           A +E   K+Y
Sbjct: 63 AAIKETLSKNY 73


>UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter
           RepID=A1VXK8_CAMJJ
          Length = 120

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A S   +  +  I     KI        +CE+C + I   R K+ P    C+ C+ 
Sbjct: 53  QIDFAISTNLKEELIEIEDSLDKIKNGTYG--ICESCDDEIDSQRLKVKPHARYCITCRQ 110

Query: 64  YQERQRKH 71
             E+ +KH
Sbjct: 111 IAEQGKKH 118


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60
          D+ D A  + EQ     I    + +++       C  EACG PIPE RR+   G   CVE
Sbjct: 2  DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61

Query: 61 CQAYQER 67
          CQ  +E+
Sbjct: 62 CQERREQ 68


>UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ
          Length = 213

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A     +L +  I+     IN     +  C  CG  IP  R    P    CV CQ   
Sbjct: 59  DFALIDNLKLKLRQIDEAIALINQGKYGL--CIDCGQKIPVDRLFANPVAIRCVACQKRV 116

Query: 66  ERQ 68
           E +
Sbjct: 117 EER 119


>UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales
           RepID=A4XDN2_SALTO
          Length = 139

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E   A S+ E++T   + R  ++++  G     CE CGNPIP  R   FP  TLCV C+ 
Sbjct: 79  EISLANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQ 134

Query: 64  YQERQ 68
             ER+
Sbjct: 135 LAERR 139


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 1  MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MS + D   A + TEQL  + ++ I + ++   I    C+ACGN IPEARR   PGV LC
Sbjct: 1  MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60

Query: 59 VECQAYQERQRK 70
          V CQ  +E   K
Sbjct: 61 VGCQEVEEHLTK 72


>UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57
          Length = 151

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52
            D  D A    E           +K+                  CE+CG  I   R +  
Sbjct: 70  PDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEAR 129

Query: 53  PGVTLCVECQAYQERQRKHYA 73
           P   LC++C+   E + K  A
Sbjct: 130 PTADLCIDCKTLAEIREKQMA 150


>UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE
          Length = 143

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D     TE+                +    Q+I      V  C  C N IP  R K
Sbjct: 54  ADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGV--CSECDNEIPGKRLK 111

Query: 51  IFPGVTLCVECQAYQERQR 69
             P    C++CQ   +R+R
Sbjct: 112 AVPWTPYCLDCQDSADRRR 130


>UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS
          Length = 120

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 2   SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           SD+ D     +    +   +  I     +I         C  CG  IPE R +  P   +
Sbjct: 48  SDDMDRKMLESLSAKDLRCLQQIESALLRIEQGRYGK--CADCGESIPEDRLRAIPYSLM 105

Query: 58  CVECQAYQERQRKHY 72
           C+ECQ+ +E +R+ +
Sbjct: 106 CIECQSARESKRRAF 120


>UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria
           RepID=A8PLZ9_9COXI
          Length = 295

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 1   MSDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARR 49
           + D +D A    E                 I     +++        C +CG  I   R 
Sbjct: 213 LPDMSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGHYG--FCSSCGVEIGIRRL 270

Query: 50  KIFPGVTLCVECQAYQERQRKH 71
           +  P   LC++C+   E + K 
Sbjct: 271 EARPTANLCIDCKTLDEIREKQ 292


>UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM
          Length = 234

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A       T+  I+    K+        +CE C   I + R +  P  T C++C++  
Sbjct: 64  DFALREDAITTLGAIDDALDKMEEGMYG--ICEVCHQEISQDRLEAIPYTTQCIDCKSRD 121

Query: 66  ERQRKHY 72
           E   K +
Sbjct: 122 EHLPKSH 128


>UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L3E3_9DELT
          Length = 131

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +++                IN    ++        +C+ CG  I  AR +
Sbjct: 39  ADVADRATAESDRHLTILMRERDRQLIGEINEALARVKDGDYG--ICQECGEEIGLARLR 96

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P  TLCV C++  E   + Y
Sbjct: 97  AQPTATLCVHCKSMLEEMGRPY 118


>UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM
          2246 RepID=UPI00016C4B65
          Length = 95

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 9  YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           +  E   +  I R  +++ A       CE C   IP AR    P  T CV+CQ   ER
Sbjct: 1  MAELEAKELAQIERALRRLKAGTYGK--CEVCSIKIPVARLNALPFSTFCVDCQREMER 57


>UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP
          Length = 212

 Score = 62.6 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A     +  +  +     +++        C+ CG  I   R +  P  T C EC+A  
Sbjct: 67  DFALRENARFRLLAVEDALARMDRGTYGR--CDECGVDIDLERLEAVPFTTKCRECKARA 124

Query: 66  ERQR 69
           E + 
Sbjct: 125 EGKD 128


>UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10
           Tax=Actinomycetales RepID=A6WCW5_KINRD
          Length = 159

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             +  +    R   ++ +    V  CE+C  P+ +AR + FP VTLCV C++  ER+
Sbjct: 105 NARELLEQTQRALVRLGSGVYGV--CESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159


>UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM
          Length = 203

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D +     Q+ +  +    +K++     +  CE CG PIPE R    P    CV+C+   
Sbjct: 62  DISLHEKNQMVLDKVEEALEKLDNDIYGM--CENCGKPIPEERLDALPYAEFCVQCKKKS 119

Query: 66  E 66
           E
Sbjct: 120 E 120


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
            D+     +   + T+  I     ++      +  CE CG PIPE R +I P    CV C
Sbjct: 49  PDDTALVQADALRQTLEDIEEALLRLRQGRYGL--CEKCGKPIPEGRLEILPYARCCVSC 106

Query: 62  QAYQERQR 69
           Q  +  + 
Sbjct: 107 QQRRRGRA 114


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHG--IPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
          D      E  T   I R+R +    G       CE C  PIPEARR+  PGV LCV+CQ+
Sbjct: 9  DAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQS 68

Query: 64 YQER 67
           ++R
Sbjct: 69 GRDR 72


>UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria
           RepID=Q2LSS1_SYNAS
          Length = 150

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52
            D  D A   +++     +    +K+ A               LCE CG PI E R    
Sbjct: 69  PDPTDRASLESDRNFELRMRDRERKLIAKMQEAIKRIDEGEFGLCEVCGGPISEKRLMAR 128

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC++C+  QE+  K
Sbjct: 129 PVTTLCIDCKTKQEKLEK 146


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          DE DE+  V  +     +     K+         C  CG  IPE RR+   GV LC++CQ
Sbjct: 2  DEGDESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61

Query: 63 AYQERQR 69
             ER++
Sbjct: 62 TLSERKQ 68


>UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia
           RepID=B4D0A5_9BACT
          Length = 233

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 4   EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           + D A S+  Q       I    ++I      V  CE  G PI   R +  P     VEC
Sbjct: 134 DRDFALSLLSQEQDALYEIEEALKRIELGTYGV--CEMSGKPIAHPRLEALPFARYTVEC 191

Query: 62  QAYQERQRK 70
           Q+  E+Q K
Sbjct: 192 QSQIEKQGK 200


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D  +   E      ++    +  A       C  CG PIPE RR   PGVTLCV 
Sbjct: 1  MPDFCDMGHEAEELARKAALSMAGTR-RADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59

Query: 61 CQAYQE 66
          CQA +E
Sbjct: 60 CQAAKE 65


>UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A3ZQT2_9PLAN
          Length = 134

 Score = 61.8 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE     +  E   +  I++  ++I         CE C   IP AR +  P  TLC++CQ
Sbjct: 54  DELSSQLAEVESRELAQIDKALERIRGG--SFGECEGCTCKIPTARLQALPYATLCIKCQ 111

Query: 63  AYQE 66
              E
Sbjct: 112 RELE 115


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 61.8 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A  +        +    +   A       CE CG PIP+ARR+  PG + C++
Sbjct: 1  MADLADHANELVLARLDGLLAA--RPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCID 58

Query: 61 CQAYQERQ 68
          CQ   ER+
Sbjct: 59 CQDRHERR 66


>UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF
          Length = 124

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 2   SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           +D  D   S+     E   +  INR  +KI        +C+  G  IP AR    P  T+
Sbjct: 51  TDTFDRTISLEVTTKEYELLRQINRALEKIEESSYG--ICDVSGEEIPLARLMAIPYATM 108

Query: 58  CVECQAYQER 67
            V+ Q+  E+
Sbjct: 109 TVKAQSQFEK 118


>UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=45 Tax=root RepID=A7ZJE9_ECO24
          Length = 73

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D A  + E    T I    +++N   I    C  CG+PI E RR +  G   C  
Sbjct: 1  MADIIDSASEIEELQRNTAIK--MRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCAS 58

Query: 61 CQAYQERQRKHY 72
          CQ   E   K  
Sbjct: 59 CQEDLELISKQR 70


>UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii
           DSM 11347 RepID=B5YGE3_THEYD
          Length = 129

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           +S++       T +  +  I    +K+        +CE CG+ IPE R KI P    C +
Sbjct: 56  LSEDISLKQLSTHRDILKKIEEALRKLEEGTYG--ICEMCGDEIPEERLKILPFAIYCRD 113

Query: 61  CQAYQERQRK 70
           CQ   E   K
Sbjct: 114 CQEKIEMIEK 123


>UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfonatronospira thiodismutans ASO3-1
           RepID=C0GTL3_9DELT
          Length = 243

 Score = 61.8 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A     +  +  I+    ++        +C++CG  I EAR +  P    C  C    E 
Sbjct: 57  ALDSQARSELNHIDHALDRMIIGNYG--ICDSCGQEISEARLQAVPWARYCRVCVNKAEE 114

Query: 68  Q 68
           +
Sbjct: 115 K 115


>UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis
           ortholog n=1 Tax=Clostridium acetobutylicum
           RepID=Q97H97_CLOAB
          Length = 200

 Score = 61.5 bits (148), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
            A+   E+  +  I     K+   G    +CE CG PI E R +  P    CVECQ   
Sbjct: 64  MAFRKNEEALLNKIGNAIDKVEHGGYG--ICEVCGKPISEERLEFVPYAENCVECQNKL 120


>UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding
          protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO
          Length = 76

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A   TE +    I + +QK       V  C  C   IPE R+K   G   C++
Sbjct: 1  MTDQVDRANEYTEIMQQLAIQKHQQK-TREKSTVKYCLDCQEEIPEIRQKN--GYCRCID 57

Query: 61 CQAYQERQRKHY 72
          CQ   E+ ++ Y
Sbjct: 58 CQRIIEKHQRIY 69


>UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus
          SB RepID=Q2LQQ9_SYNAS
          Length = 86

 Score = 61.5 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKIN---------------AHGIPVYLCEACGNPIPEA 47
          DE D A           +    ++ +               A      +C  CG  I  A
Sbjct: 2  DEIDHAQQHEAMHREIALREHFRRRDNYSERGRNPGLHPKGAGPGERRICRDCGEEIQPA 61

Query: 48 RRKIFPGVTLCVECQAYQERQRKH 71
          R    P    C+ECQ  +ER+ +H
Sbjct: 62 RLAAMPFAVRCIECQGIKERRERH 85


>UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBC7_TOLAT
          Length = 76

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 28/73 (38%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          MSD  D A  + +Q     + R  + +    +    C  C  PIP  R         CVE
Sbjct: 1  MSDVVDRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVE 60

Query: 61 CQAYQERQRKHYA 73
          CQA  E Q    A
Sbjct: 61 CQALFEEQEAIRA 73


>UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria
           RepID=Q1MS84_LAWIP
          Length = 133

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +           E+  +  I    Q+I+     V  CE CG+ I   R K
Sbjct: 52  ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDGTYGV--CEDCGDDIGTPRLK 109

Query: 51  IFPGVTLCVECQAYQERQR 69
             P   LC+ C++ QE   
Sbjct: 110 ARPVTKLCINCKSRQEEGE 128


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D+A    E +    +   ++           CE CG  IPEARR+  PG   C+ CQ
Sbjct: 2  DVIDQANERAENMVQAAL--AQRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQ 59

Query: 63 AYQERQRKH 71
            +E   + 
Sbjct: 60 ELREHPARR 68


>UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria
           RepID=A5EW31_DICNV
          Length = 143

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D A    E           +  +  I++  ++I         CE C   I   R +
Sbjct: 58  ADLNDRASQEEEFSLELRTRDRERKLLRKIDKALERIKQGHFG--YCEQCDEEIGFHRLE 115

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P   LC++C+   ER+ K +
Sbjct: 116 ARPTAELCIDCKHLAERKEKSF 137


>UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis
           vadensis ATCC BAA-548 RepID=D1N407_9BACT
          Length = 133

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
            E +      E   +  I    +++         C+ CG PI E R  I P    CV+C+
Sbjct: 64  HEMELQLLSEEGDVLRLIEDAIKRLVDGEYGK--CQECGEPISEGRLAIRPYAVYCVKCK 121

Query: 63  AYQERQRKH 71
              E+Q  H
Sbjct: 122 EMHEKQGWH 130


>UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V602_ACIBY
          Length = 72

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D+ D A  +  QL    I       +     +  CE CGN IP  R++ +  VTLCVE
Sbjct: 7  MTDKIDIAQEL--QLKQVQIQ----PKDFSRPSLTECEECGNDIPIERQR-YGSVTLCVE 59

Query: 61 CQAYQERQRKHY 72
          C+  QE+  K Y
Sbjct: 60 CKNTQEKLSKRY 71


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 4  EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
          E + A  + +      I   R + +  G     C  CG PIP ARR   P  T C ECQ 
Sbjct: 6  EFELAQQIEQMQRDVAIELARAQCH--GAGAEECVECGEPIPAARRACVPYATRCTECQG 63

Query: 64 YQERQRKHY 72
            E++R  Y
Sbjct: 64 RFEQRRTGY 72


>UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155
           RepID=A6DK24_9BACT
          Length = 147

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E +      E + +  + +  ++++        C  C + IPEAR    P   LCV C+ 
Sbjct: 69  EINLNVMSDEGIKVQLVQQAIERLDEGKYGR--CVDCRDDIPEARLDAIPYAKLCVACKE 126

Query: 64  YQERQR 69
            +E Q 
Sbjct: 127 TRESQG 132


>UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15
          RepID=Q52PP5_9CAUD
          Length = 77

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 2  SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60
          +DE+D A  + E      I ++ +        V   C  C   IP+ R     G   C+ 
Sbjct: 5  TDESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIH 62

Query: 61 CQAYQERQRKHY 72
          CQ   E  +++Y
Sbjct: 63 CQTKFEFNQRNY 74


>UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales
           RepID=D0LZD2_HALO1
          Length = 124

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 1   MSDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           ++DE D A S +           E+  +  ++   +K+        +CE C  PI + R 
Sbjct: 43  LADEMDLASSESYQSFEFRLRGREKSLLNKLDLALRKLGEGTFG--ICEVCEEPIGKKRL 100

Query: 50  KIFPGVTLCVECQAYQERQRKHY 72
           +  P  TLC++C+  QER  + +
Sbjct: 101 EARPETTLCIQCKEAQERDERVF 123


>UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68
           Tax=Alphaproteobacteria RepID=A7HW84_PARL1
          Length = 146

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A S TE+                I+   ++I+        CE  G PI   R  
Sbjct: 64  PDIADRASSETERSLELRTRDRQRKLVSKIDAAIRRIDEGTYG--YCEETGEPISLKRLD 121

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P  TL +E Q   ER+ K Y
Sbjct: 122 ARPIATLSIEAQERHERREKVY 143


>UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus
          RepID=Y1497_HAEIN
          Length = 75

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPG 54
          M+D  D+     E L    +           +++A       C  CG PIP  R +  P 
Sbjct: 1  MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPF 60

Query: 55 VTLCVECQAYQERQR 69
             CV CQ   E  R
Sbjct: 61 AHRCVSCQQDWEEGR 75


>UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD
          Length = 213

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 7   EAYSVTEQLTMTG----INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
              +V E+L        +     +I         CE+CG PIP  R +  P    CV+C+
Sbjct: 58  RNQAVGERLRDERALADVEDALSRIRQGTYG--QCESCGRPIPPDRLEAIPTTRRCVDCE 115

Query: 63  AYQERQR 69
              E ++
Sbjct: 116 REVEARQ 122


>UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UR73_RHOBA
          Length = 140

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE +      E   +  I     +          CE CG PIP  R K  P    C+ C+
Sbjct: 53  DELNSQLVEVESRELLAIEEAIARFEEGRFG--DCEDCGKPIPLNRLKAIPYAVDCINCR 110

Query: 63  AYQERQ 68
              ER+
Sbjct: 111 RAAERE 116


>UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9
          Length = 127

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A S  E+  +  IN+   +I+ +      C AC   I   R    P   LC+ CQ  +E+
Sbjct: 64  ALSSVEKKKLHLINQALYRISQNTYG--NCLACDKSITRERLVAIPYAFLCISCQTKKEK 121

Query: 68  QRKH 71
           + K 
Sbjct: 122 KGKR 125


>UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria
          RepID=B3B1J8_ECO57
          Length = 75

 Score = 59.9 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRI--RQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D++D A +V E+ +   +     R++         +C  CG  IP AR    P    CV 
Sbjct: 2  DDSDRAQAVMERGSERALCNRLTRKRQAVDTPGRRVCADCGGEIPAARLVAVPDAIRCVN 61

Query: 61 CQAYQERQ 68
          CQ   E +
Sbjct: 62 CQNIMEAR 69


>UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Shewanella
          oneidensis RepID=Q8EDR9_SHEON
          Length = 71

 Score = 59.5 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQ----KINAHGIPVYLCEACGNPIPEARRKIFPGVT 56
          M D+ D A  V +Q     ++R R+    + + +      C  CG  I   R    P   
Sbjct: 1  MIDQFDRAQEVEQQFRDNALSRQRKHKVEQPDINNKGERCCLDCGVVIEARRLVFMPTAV 60

Query: 57 LCVECQAYQER 67
           CVECQ  +ER
Sbjct: 61 RCVECQTAKER 71


>UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2
           Tax=Betaproteobacteria RepID=A1K6D2_AZOSB
          Length = 135

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 15  LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
             +  I   R++I        +C  CG  IP AR +  P  T CV CQ+  ER
Sbjct: 71  RELRDIEAARERIAEGE--AGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121


>UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae
          RepID=A1F607_VIBCH
          Length = 76

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINRI--------RQKINAHGIPVYLCEACGNPIPEARRKIF 52
          MSD  D+A    ++     +N          +++ +        C +CG+ IP+ R +  
Sbjct: 1  MSDLFDKAQERDQEFLALALNNHHAARRNMIQEQPDEDEEGNRYCLSCGSEIPKRRIEAQ 60

Query: 53 PGVTLCVECQAYQE 66
          P    CV CQ+ +E
Sbjct: 61 PEAVRCVSCQSRKE 74


>UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas
          mendocina ymp RepID=A4XZG1_PSEMY
          Length = 72

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPG--VTLC 58
          M+D  D A           +      +         CE CG+PIP  R +         C
Sbjct: 1  MADAVDIANDRMLDELDRRLANHA--LARQCPVAEECEDCGDPIPFERVQALAKLPCLRC 58

Query: 59 VECQAYQERQR 69
          VECQ Y ER+ 
Sbjct: 59 VECQGYHERKG 69


>UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria
           RepID=B4SQA3_STRM5
          Length = 405

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 9/78 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIP---------VYLCEACGNPIPEARRKIFP 53
           DEA+ A   TE           +K+                  C   G  I   R +   
Sbjct: 325 DEAERATRETENSLELRTRDRYRKLIGKIDSTLKRLEAGDYGYCVDTGEEIGLERLEARL 384

Query: 54  GVTLCVECQAYQERQRKH 71
                ++ Q   E  +K 
Sbjct: 385 TAERTIDAQERWEHLQKQ 402


>UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas
          testosteroni KF-1 RepID=B7WXU2_COMTE
          Length = 76

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKI----NAHGIPVYLCEACGNPIPEARRKIFPGVT 56
          M+D  D A +   QL    +    ++              C  CG  IPEARRK  PG  
Sbjct: 1  MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATECA-CGALIPEARRKAVPGCQ 59

Query: 57 LCVECQAYQERQR 69
           CV+C++ QER++
Sbjct: 60 RCVKCESAQERKK 72


>UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B2I3M6_ACIBC
          Length = 66

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D  D+A    + L    I     +    G     C  CG  IPE RR+   GV  C+E
Sbjct: 1  MTDLIDKAQESADYLLQQEIAN---RCRFEGESEKECVECGEEIPE-RRRALGGVKFCIE 56

Query: 61 CQAYQERQRK 70
          CQ   ER+R+
Sbjct: 57 CQTKLERKRR 66


>UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=A8R990_9CAUD
          Length = 85

 Score = 59.2 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 9  YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
              E +    I   R+++         C  C   IPEARR+   GV  C+ CQ+  +
Sbjct: 12 QLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIYCIGCQSMHD 69


>UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4
          Length = 242

 Score = 59.2 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D A +   +  +  I+   + I         CE CG  IP  R +  P    C+  Q 
Sbjct: 62  EKDIALNEHSEQLLDEIDNALKAIEEGSYGK--CEVCGTDIPYERLEAIPNARRCI--QH 117

Query: 64  YQER 67
            +E+
Sbjct: 118 AEEK 121


>UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root
          RepID=YO82_BPP2
          Length = 74

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M D  D       +L    IN    ++   G    +CE C  PIP ARR  +P  T CV 
Sbjct: 1  MPDNVDFIQEQQAELLERQINAA--RVKHCGASALVCEECDAPIPAARRAAYPSATRCVS 58

Query: 61 CQAYQERQRKHY 72
          CQ+  E + KHY
Sbjct: 59 CQSVFEAKNKHY 70


>UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium
           Ellin514 RepID=B9XR79_9BACT
          Length = 192

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 1   MSD------EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D      + D A S+          I    ++I  +   V  CE  G PIP+AR +  
Sbjct: 82  MADSGTDNFDRDFALSLLSSDQDAIYEIEEALKRIEKNTYGV--CELTGKPIPKARLEAI 139

Query: 53  PGVTLCVECQAYQERQR 69
           P     V+ QA  E++ 
Sbjct: 140 PWTRFTVQAQAQLEKEG 156


>UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria
           RepID=B5EG80_GEOBB
          Length = 118

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52
            D  D A   +++     I    +K+                 +CE C   I EAR K  
Sbjct: 39  PDPTDRATQESDRTFELRIRDRERKLIVKIQEALARIEAGTFGICEVCEEDISEARLKAR 98

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC++C+  QE++ +
Sbjct: 99  PVTTLCIDCKMEQEKKER 116


>UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD
          Length = 118

 Score = 58.4 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52
            D  D A   +++     I    +K+                  CE C  PI   R +  
Sbjct: 39  PDPTDRASLESDRNFELRIRDRERKLIMKIRQALERIEQGTFGECECCEEPIGAERLRAR 98

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC++C+  QER+ K
Sbjct: 99  PVTTLCIDCKTEQERKEK 116


>UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=B8J371_DESDA
          Length = 120

 Score = 58.4 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +           E+  +  I     +I+       +CE CG+ I   R K
Sbjct: 39  ADPADRATAESDRAFTLRIRDRERRLIRKIQAALTRIDDGTYG--ICEDCGDDISIPRLK 96

Query: 51  IFPGVTLCVECQAYQERQR 69
             P   LC+ C+A QE   
Sbjct: 97  ARPVTRLCINCKAKQEEDE 115


>UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268
           RepID=C8PIH5_9PROT
          Length = 118

 Score = 58.4 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 2   SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D+ D A   T+                 I    ++I      +  CE+CG  I   R K
Sbjct: 40  ADDFDVASMNTDLSIEYSLNVNQQKAFLEIESALKRIENGTYGL--CESCGEQISLERLK 97

Query: 51  IFPGVTLCVECQAYQERQRK 70
           + P   LC+ C+   E+Q +
Sbjct: 98  VNPEARLCISCKEQAEKQNR 117


>UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1
           RepID=A2SLK5_METPP
          Length = 122

 Score = 58.4 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           DE D       Q  +  ++   Q++N        CE CG PI   R +  P    C++CQ
Sbjct: 55  DELDITLISHWQRELDEVSAALQRLNTGSYG--HCERCGEPIGLPRLRALPEARHCLDCQ 112

Query: 63  AYQER 67
              +R
Sbjct: 113 EQADR 117


>UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter
           RepID=C6E710_GEOSM
          Length = 130

 Score = 58.4 bits (140), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M  +A  A +   +  +T +   ++++         CE CG  I   R ++ P    CV 
Sbjct: 57  MLSDAGLAIADIRRNQLTALEEAQRRVEQGTYGK--CENCGEVIDIQRLRLMPFAAYCVS 114

Query: 61  CQAYQERQRK 70
           CQ  +E   K
Sbjct: 115 CQKEKEGPGK 124


>UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales
           RepID=C1DXT7_SULAA
          Length = 144

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
             ++ T+  I+   +KI++      +CE CG  I E R +  P V LC++C   +E 
Sbjct: 56  QADRETLYLIDLALRKIDSGIYG--ICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110


>UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae
          RepID=C5S4P2_9PAST
          Length = 77

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQK------INAHGIPVYLCEACGNPIPEARRKIFPG 54
          MSD+ D      EQL    +    +       I    +    C  CG PIP  R +  P 
Sbjct: 1  MSDDVDRIMEQDEQLLSLQLAPHLENQLSDDEIEQIALSGRDCIECGLPIPIQRLRAVPF 60

Query: 55 VTLCV--ECQAYQE 66
             C+   CQ   E
Sbjct: 61 AVRCICCCCQQDYE 74


>UniRef50_Q6SHS2 DnaK suppressor protein n=1 Tax=uncultured marine bacterium 311
           RepID=Q6SHS2_9BACT
          Length = 190

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 11/81 (13%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEA--CGNPIPEARRK 50
           +D++D A                +K+                  C    CG  I   R +
Sbjct: 107 ADDSDRATHEEGFTLEIKTRERERKLLTKIDQSVKGLSNHDYGFCLNPNCGVEIGIRRLE 166

Query: 51  IFPGVTLCVECQAYQERQRKH 71
             P   LC++C+  +E   K 
Sbjct: 167 ARPTARLCIDCKTLEEITEKQ 187


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 1  MSDEAD--EAYSVTEQLTMTGINRIRQKIN-AHGIPVYLCEACGNPIPEARRKIFPGVTL 57
          MS + D   A + ++         IR  +     +    C  CG+ IP++RR+  PGV+L
Sbjct: 1  MSIDVDDSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVSL 60

Query: 58 CVECQAYQERQRK 70
          C+ CQ ++E   K
Sbjct: 61 CMYCQEWRESGDK 73


>UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L9K5_9DELT
          Length = 120

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D AD A + +++                I     +I+        C  CG  I  AR K
Sbjct: 39  ADPADRATAESDRAFTLRLRDRERRLIKKIKEALDRIDEGTYG--ECVECGEDISVARMK 96

Query: 51  IFPGVTLCVECQAYQERQR 69
             P  TLC++C++ QE   
Sbjct: 97  ARPVTTLCIKCKSRQEADE 115


>UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia
           multivorans RepID=A9AKZ2_BURM1
          Length = 256

 Score = 58.0 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A    +   +  I R +Q++         C  C  P+  AR +  P    C  CQA
Sbjct: 185 DVDHALIGMKLAELRAIRRAQQRMVDGSYG--DCIDCDGPVGYARLRARPTAERCTHCQA 242

Query: 64  YQERQ 68
             ER+
Sbjct: 243 LYERR 247


>UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I8K1_9CLOT
          Length = 204

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            A    E+  +  I+   + I+        C+ CG  I + R    P    C+EC+  
Sbjct: 64  RALEANERALLDKIDDAVRAIDEGSYGK--CQKCGKEIDKERLDFLPYALNCIECEDV 119


>UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL
          Length = 121

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 13/78 (16%)

Query: 3   DEADEA-----------YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D AD A            S  ++  +  +     +I         C +CG+ I   R + 
Sbjct: 41  DIADRATNSYTKEFLFTQSANDRNLLQMVEGALIRIGEGTYG--ECVSCGSEINSKRLEA 98

Query: 52  FPGVTLCVECQAYQERQR 69
            P    C+ CQ   E+  
Sbjct: 99  VPWARYCIGCQEKIEKGE 116


>UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter
           RepID=B3EAN1_GEOLS
          Length = 218

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 3   DEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D  D+A S             E+  +  I+    +I        +CE C   IP  R K+
Sbjct: 120 DIYDQASSERDRELGLLLNDREREKLHSIDEALLRIAEGEYG--ICEECDEDIPMGRLKV 177

Query: 52  FPGVTLCVECQAYQERQRKH 71
            P    CV+C++  E+ +  
Sbjct: 178 LPFTRHCVKCKSDLEKFQAQ 197


>UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776
           RepID=C1ZKC1_PLALI
          Length = 152

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           E   +  INR    I      V  C+ C   IP AR +  P  T+CVECQ  QE
Sbjct: 62  ETRELMQINRALALIEEGHYGV--CQKCSKAIPLARLQAVPFTTVCVECQRRQE 113


>UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root
          RepID=A5EYQ4_VIBC3
          Length = 69

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGI--PVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D  D+A     +     +   R +            C  C +PIP+ R++   G   C  
Sbjct: 2  DVIDDAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTP 61

Query: 61 CQAYQERQ 68
          CQA +E++
Sbjct: 62 CQAAKEQR 69


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D AD+A  + E           ++          CE CG+PIPEARR+ +P  T C ECQ
Sbjct: 2  DIADKAAEIEEMNRAQA--LAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQ 59

Query: 63 AYQERQRKHY 72
          A  ER  K+ 
Sbjct: 60 ARHERHAKNR 69


>UniRef50_Q31G85 Transcriptional regulators, TraR/DksA family n=1 Tax=Thiomicrospira
           crunogena XCL-2 RepID=Q31G85_THICR
          Length = 142

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52
           +D +D A    E           +K+ +                C+  G  I  AR +  
Sbjct: 61  ADPSDRASQEEEFALELRTRDRERKLISKIDKSLRDIEDGDYGYCKMSGEEIGLARMEAR 120

Query: 53  PGVTLCVECQAYQERQRKH 71
           P  TL VE +  QE + K 
Sbjct: 121 PTATLTVEMKTKQEMREKQ 139


>UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10
           Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX
          Length = 206

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           A    E+  +  I    +++        +C  C  PI E R +  P   LC EC
Sbjct: 67  ALKDNEKYILRQIEDAFKRMEIGTYG--ICAHCHKPIEEERLEALPYTVLCAEC 118


>UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae
           RepID=A4X6U9_SALTO
          Length = 132

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 4   EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           E D A S+   +            ++         CE CG  IP  R +IFP  T CV C
Sbjct: 66  ERDTAQSLLRTILDRRAQFEHALTRLEEGTYG--FCEGCGASIPVERLEIFPSATTCVTC 123

Query: 62  QAYQERQR 69
           +  +ER+ 
Sbjct: 124 KQTRERRA 131


>UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B6BSH6_9RICK
          Length = 180

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 13/83 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D+A S T++                I++   +I         C     PI   R  
Sbjct: 98  ADIVDQASSYTDKNVEMKAINRQIKLISEIDKALARIREDIYG--YCLDTAEPIGLKRLM 155

Query: 51  IFPGVTLCVECQAYQERQRKHYA 73
             P     +  Q   E+  K +A
Sbjct: 156 ARPVAKYTIAAQEKHEKDEKVHA 178


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           ++   G     C  CG  IP  RR++ PGV  C+ CQ  +ER    Y
Sbjct: 4  SRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51


>UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YK78_THEYD
          Length = 123

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           E+  +  I +  +KIN       +CEACG  IP  R +  P   LC+EC+  QE   K
Sbjct: 64  ERKLLKKIEKTLEKINNGTYG--ICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119


>UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1
          RepID=Q2WA51_MAGSA
          Length = 74

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 26/71 (36%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          M+D AD A    E      +   R +    G   Y C +CG  IP+ RR   PG   C  
Sbjct: 1  MADLADLAKEREEANREAALAAFRARARPTGESAYFCRSCGERIPDERRAAVPGTNHCTF 60

Query: 61 CQAYQERQRKH 71
          C         H
Sbjct: 61 CAQQITAASPH 71


>UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788757
          Length = 187

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           D A   T +  +  I+   Q+++        C  CG  IP  R +  P    C+E
Sbjct: 66  DLAIQETLERELEQIDAALQRMDQGEYGT--CAECGREIPYERLEALPYTAYCLE 118


>UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium
           RepID=A0Q071_CLONN
          Length = 206

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            A    E   +  I+     +        +C  C N IP+ R +  P    CV C+  Q+
Sbjct: 64  IALEKAELEKLHEISESLYDMEHGTYG--ICRICKNQIPDDRLEAVPYAKYCVHCKNNQD 121

Query: 67  R 67
           +
Sbjct: 122 K 122


>UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM
          12804 RepID=A9ID32_BORPD
          Length = 94

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 4  EADEAYSVTEQLTMTGINRIRQKINAH--GIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
          + + A  + E      +  +R +++    G     C  CG+ I  AR  + PG   C++C
Sbjct: 21 QYELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDC 80

Query: 62 QAYQERQRKHYA 73
          Q   E+Q+  +A
Sbjct: 81 QTAHEKQQTRHA 92


>UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT
          Length = 123

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52
            D  D+A    ++     I    +++                  C+ACG PI   R +  
Sbjct: 42  PDPTDQASMEIDRNFDLKIKDRERRLIKKIDQAIERIQNGEFGECDACGGPISVKRLEAR 101

Query: 53  PGVTLCVECQAYQERQRK 70
           P  TLC+EC+  QE++ +
Sbjct: 102 PVTTLCIECKTAQEQEER 119


>UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage
          gene n=1 Tax=Aliivibrio salmonicida LFI1238
          RepID=B6EIS7_ALISL
          Length = 71

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINA--HGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
          D  D A ++  + T   +     K            C  C   IP+AR++   G   CV 
Sbjct: 2  DAFDRASALEAKQTEVALANHMAKQKNKVEIKSAEECIECEKAIPKARQEAVKGCQYCVN 61

Query: 61 CQAYQER 67
          CQ   ++
Sbjct: 62 CQELADK 68


>UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM
          Length = 119

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINA-HGIPVYLCEACGNPIPEARRKIFPGVTLCV 59
           M D     Y   +Q T T +  +R  +          C+ CGN IP AR    P  T CV
Sbjct: 42  MPDVEGMTYRSWKQRTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCV 101

Query: 60  ECQAYQERQRKH 71
            C + +E +   
Sbjct: 102 HCMSAREERGAQ 113


>UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LEV8_RALME
          Length = 123

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 8   AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           A     ++ +  I   R ++        +C  C  PIP  R + +P    C  CQ   E+
Sbjct: 60  AMREHYRVELEDIAAARGRMTLG--SYAICRECEEPIPFERLQAYPTAKRCTACQREHEQ 117

Query: 68  QR 69
           +R
Sbjct: 118 KR 119


>UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CBT8_THET1
          Length = 126

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + A     +  +  I    ++++       +C  CG  IP  R    P    CV  Q 
Sbjct: 62  EKEIALQRNLRSVLNEIEAALKRMDEGTYG--ICIDCGQEIPIERLMARPYAVRCVADQE 119

Query: 64  YQER 67
             +R
Sbjct: 120 KYDR 123


>UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1
           bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG
          Length = 119

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 3   DEADEAYSVTEQLT-----------MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           DE D A   +E+             +  IN    KI  +      CE C N I   R K+
Sbjct: 41  DEIDTASQNSEKEMYFELVASDKMTLDAINDALVKIEKNAYGK--CEGCSNNILLERLKV 98

Query: 52  FPGVTLCVECQAYQE 66
            P    C++CQ   E
Sbjct: 99  IPWAKYCIQCQEESE 113


>UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C120_SPHTD
          Length = 130

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 15  LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
                I R   K++        CE C  PIP  R +  P    C++CQA  +R++
Sbjct: 73  DRKVLIERAITKMDQGEYG--YCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125


>UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas
           RepID=A5W685_PSEP1
          Length = 154

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 13/81 (16%)

Query: 2   SDEADEAYSVTEQ-----------LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           SD AD A    E+             +  +     +I         C+  G PI   R  
Sbjct: 72  SDPADVASVEEERSWLVNAIDRDQRLLPQLEMALDRIA--DESFGWCDDSGEPIGLKRLL 129

Query: 51  IFPGVTLCVECQAYQERQRKH 71
           I P    C+E Q   E+  +H
Sbjct: 130 ISPTTKYCIEAQERHEQLDRH 150


>UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8EWK7_ARCB4
          Length = 123

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           +   +  I    +KI        +C+ CG  IP  R K  P    C EC+   E++ 
Sbjct: 63  QLDELKQIEEALKKITLGTYG--ICDMCGINIPLGRLKAKPFAKFCTECRTVYEQEN 117


>UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM
          Length = 137

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D    A        ++ I+   +++         CE  G+ I   R  + P    CV+ Q
Sbjct: 61  DIIMSAQKRN--SLLSEIDEALERMEQGVYG--YCEETGDEIGFGRLDLEPTARYCVDVQ 116

Query: 63  AYQERQRK 70
              +++ +
Sbjct: 117 ERLDKKNR 124


>UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK
           suppressor protein n=2 Tax=Brachyspira
           RepID=C0QW50_BRAHW
          Length = 121

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 10  SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           S  E+  +  +N   ++I         C  C   I E R    P    CV C +  E ++
Sbjct: 59  SQKEKDKLDMLNNALKRIEEGTYGK--CIDCKEEINEERLTALPYTLRCVNCMSKYEDKK 116

Query: 70  KH 71
           + 
Sbjct: 117 RR 118


>UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2
           Tax=Cystobacterineae RepID=Q1D0G7_MYXXD
          Length = 130

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 17  MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           +  + +   K+         CE CG+ IP  R +  P    CV CQ
Sbjct: 66  LARVLKALGKLRDDPDAFGECEECGDEIPLGRLRAMPYAEFCVTCQ 111


>UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae
           RepID=Q221D7_RHOFD
          Length = 124

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           + E + A    +   +  ++   ++I      +  C  CG  IP AR    P    C+ C
Sbjct: 55  ARELEFALDARDSEELDRLDAALRRIEDGSYGL--CVDCGVGIPAARLHAAPDALRCIAC 112

Query: 62  QAYQERQRKHYA 73
           Q   E+ +   A
Sbjct: 113 QEKLEKAQARQA 124


>UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LGY5_SYNFM
          Length = 257

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 18  TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             I+    KI        +CE+CG+ I   R +  P   LCV+C    E++
Sbjct: 65  EQIDLALGKIAIGEYG--ICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113


>UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus
           RepID=Q2B4E3_9BACI
          Length = 252

 Score = 55.3 bits (132), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           E D+A    +   +  +N+  Q I         C  CG  +P  R +  P    CV+
Sbjct: 63  EKDQAIEEHQNEELDKVNKALQAIEDGTYGK--CRECGKDLPFERLEAVPTALYCVD 117


>UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog
           n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS
          Length = 138

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
           E+     I     +I         C+  G PI   R    P  +   E Q   ER  KH
Sbjct: 76  ERAEAMAIKAALVRIEEDAYG--WCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKH 132


>UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R5D7_9PLAN
          Length = 150

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
             E   +  I+R  +K+ A    +  C++CG PI   R +  P    C+EC    ER+ 
Sbjct: 60  EVESRELMQIDRAIEKMRAGRYGL--CDSCGGPIKLIRLQAVPYAIECIECARRDERRE 116


>UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus
           RepID=C6D536_PAESJ
          Length = 234

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D A    E L +T I++  + ++        C ACG PIP+ R +  P    CVE    Q
Sbjct: 64  DLALLENEDLHLTRISQALEAMDNGTYG--QCRACGKPIPDERLEALPDSLYCVEHAPRQ 121

Query: 66  ERQRKH 71
           E   + 
Sbjct: 122 ETSHRQ 127


>UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae
           RepID=C9S0U4_GEOSY
          Length = 269

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           E D A     +  +  I R    I         C  CG PIP  R +  P    C E
Sbjct: 63  EKDLALKEHAERELREIERALGAIADGTYGT--CRVCGRPIPYERLEALPTTLYCRE 117


>UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VG86_9BACT
          Length = 148

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
            +E+  +  +N   Q+I+       +CE CG  I E R +I P  T CV C+   E +++
Sbjct: 87  ESEREKIRQLNEALQRISDGTYG--ICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKR 144

Query: 71  H 71
            
Sbjct: 145 R 145


>UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1
          RepID=B0ZSI9_9CAUD
          Length = 75

 Score = 55.3 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIRQKI--NAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          MSD AD A     +L      R  ++            C  CG  I   RRK  P    C
Sbjct: 1  MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60

Query: 59 VECQAYQERQRKHY 72
            CQ + +R  K Y
Sbjct: 61 FGCQEFVDRTAKGY 74


>UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZG84_BREBN
          Length = 257

 Score = 54.9 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           E D A    ++ T+  I++  Q++      +  C  CG  IP  R +  P    C E
Sbjct: 63  EKDLALDSLDRETLKEIDQALQRMEEGTYGL--CTVCGEQIPVERLEALPQSQTCKE 117


>UniRef50_Q0A892 Transcriptional regulators, TraR/DksA family n=10
           Tax=Gammaproteobacteria RepID=Q0A892_ALHEH
          Length = 149

 Score = 54.9 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 13/80 (16%)

Query: 2   SDEADEAYSVTEQLTMTGIN-----------RIRQKINAHGIPVYLCEACGNPIPEARRK 50
            DE D A    E      I            +  ++I         CE  G PI   R  
Sbjct: 68  PDEHDRATLEEEYQLELRIRERETRLLRKIDQALRRIETGEYG--YCEVTGEPIGIPRLL 125

Query: 51  IFPGVTLCVECQAYQERQRK 70
             P  TL +E +   E + +
Sbjct: 126 ARPTATLSIEAKERAEVEER 145


>UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=A0RK79_BACAH
          Length = 243

 Score = 54.9 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 13/68 (19%)

Query: 3   DEADEAYSVTEQLTMTGI-----------NRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
             AD A  + E+    G+               QKI A      +CE  G  IP  R + 
Sbjct: 49  HPADMATELYEREKDFGLIELWHKQLEDTKHALQKIEAGTYG--ICEVSGEEIPFERLEA 106

Query: 52  FPGVTLCV 59
            P  T C+
Sbjct: 107 MPTATTCI 114


>UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae
           RepID=Y250_AQUAE
          Length = 145

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           E  T+  I+   +KI        +CE CG  IPE R    P    C +C    ER+   Y
Sbjct: 64  EIATLREIDYALEKIEKGTYG--ICERCGEEIPEPRLCAIPWTRYCAKCAEEVERESGTY 121


>UniRef50_Q0VNX0 DnaK suppressor protein homolog, DksA/TraR family n=2
           Tax=Alcanivorax RepID=Q0VNX0_ALCBS
          Length = 140

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D A               +Q  +  I    +++         C+  G+PI   R  
Sbjct: 55  ADPLDAAVEEETCRHQLRFMARQQALLGKIRGALRRLQNGDYG--YCKISGDPIGLPRLL 112

Query: 51  IFPGVTLCVECQAYQERQRKHYA 73
             P    C E +A  E+  +HYA
Sbjct: 113 ARPTTEYCAEVKARLEQNERHYA 135


>UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1
          Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK
          Length = 72

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          D A  +  +    GI   + +    G     C+ CG  I + RR    GV  C+ CQ   
Sbjct: 5  DWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEIEKERR-AIKGVKRCIFCQERY 63

Query: 66 ER 67
          ER
Sbjct: 64 ER 65


>UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae
           RepID=B4U7Z4_HYDS0
          Length = 118

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
           E   +  I     +I         CE CG  IP  R K  P  ++C+ C+  +E   
Sbjct: 62  ETKLLKKIEYTLARIENGTYG--YCEVCGAEIPYERLKARPVTSMCIRCKELEEENE 116


>UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2
           Tax=Planctomycetaceae RepID=D2R7B0_9PLAN
          Length = 123

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 1   MSD--------EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D        E   +    +  T+  I    ++I A    V  C  CG  IP+AR ++ 
Sbjct: 50  MADVGTDNFEQEFTLSLMEHDGSTLEQIEAALERIEAGAYGV--CTECGCKIPKARLEVL 107

Query: 53  PGVTLCVECQAY 64
           P    CV+C   
Sbjct: 108 PYTAHCVKCAEK 119


>UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          3655 RepID=A4NCL4_HAEIN
          Length = 78

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 1  MSDEADEAYSVTEQLTMTGINRIR------QKINAHGIPVYLCEACGNPIPEARRKIFPG 54
          M+D  D+      Q+        R      + I         C+ CG  IP+AR    P 
Sbjct: 1  MTDILDQLVERESQIEALQQAARRINPLSAEAIQQIAEDGRNCDECGELIPKARLLAQPF 60

Query: 55 VTLCVECQAYQERQRKH 71
             CV+CQA  E+  K 
Sbjct: 61 ARCCVDCQALLEKTNKR 77


>UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium
           retbaense DSM 5692 RepID=C8X580_DESRD
          Length = 115

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 13/80 (16%)

Query: 1   MSDEADEAY-----------SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           ++D AD+A                   +  + +   ++      +  CE CG  I   R 
Sbjct: 38  LADPADQATLSTDRQLALLRQQRLLHQLHEVEQALHQLANGEYGL--CEECGEEIGVPRL 95

Query: 50  KIFPGVTLCVECQAYQERQR 69
              P   LC+ECQ   ER  
Sbjct: 96  VACPSARLCIECQEQLERAA 115


>UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 Tax=Chthoniobacter
           flavus Ellin428 RepID=B4D2T0_9BACT
          Length = 187

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           +DE        +Q  +  IN    KI      V  CE  G PIP  R K  P      E 
Sbjct: 83  ADE-SRGVLSHDQDLLVEINHALSKIEEGTYGV--CELTGQPIPAERLKAVPWARFTREA 139

Query: 62  QAYQERQR 69
           QA  E + 
Sbjct: 140 QAEFEARG 147


>UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72G22_DESVH
          Length = 176

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 2   SDEADEAYSVTEQLTMT-----------GINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +DE + A  + E                 +    +++ A+   V  CE CG  IP AR K
Sbjct: 87  ADENEFASRLAEMALSVTLLHRAEHRIGLLENALRRLEAYDYGV--CEGCGEDIPVARLK 144

Query: 51  IFPGVTLCVECQAYQE 66
             P   LCV CQ   E
Sbjct: 145 ASPATRLCVFCQQESE 160


>UniRef50_Q1GI88 Transcriptional regulators TraR/DksA family n=26
           Tax=Alphaproteobacteria RepID=Q1GI88_SILST
          Length = 158

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A   T++                I+   ++I+        C+  G PI   R  
Sbjct: 76  PDVADRASEETDRALELRTRDRQRKLVAKIDAAIRRIDEGEYG--YCDVTGEPISLKRLD 133

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P  T+ +E Q   ER+ K +
Sbjct: 134 ARPIATMSLEAQERHERREKVH 155


>UniRef50_Q2GI38 DnaK suppressor protein n=9 Tax=Anaplasmataceae RepID=Q2GI38_EHRCR
          Length = 152

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 2   SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           +D  D A                +  +  IN+  Q+I+        CE  G  I  AR +
Sbjct: 57  ADLTDMATKEHNIVLILNTRKRNEALIIEINKAIQRIDDGLYG--YCEETGEKIGIARLE 114

Query: 51  IFPGVTLCVECQAYQERQRKHYA 73
             P     +E Q  +E+Q+K Y+
Sbjct: 115 ANPITLYSIEEQERREKQQKLYS 137


>UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F3S7_ACIC5
          Length = 139

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 13/75 (17%)

Query: 3   DEADEAYSVTEQLT-----------MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D AD+A    +Q             ++ +    +++         C  CG  I   R + 
Sbjct: 56  DPADQAVMSYQQELIFSQGTNKHTQLSLVRLALERLEDGSYG--ECAECGEDISPRRLEA 113

Query: 52  FPGVTLCVECQAYQE 66
            P    C+ CQ   E
Sbjct: 114 VPWTPYCISCQEKVE 128


>UniRef50_A0LCU1 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria
           RepID=A0LCU1_MAGSM
          Length = 155

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52
           +D  D A   T++          +K+                  C  CG  I   R +  
Sbjct: 67  ADPTDRASLETDRNFELRTRDRERKLIGKIDRTIRTIEEDEYGFCSGCGVEIGLGRLQAR 126

Query: 53  PGVTLCVECQAYQERQRKHY 72
           P   LC++C+  +E+  + +
Sbjct: 127 PVTDLCIDCKTKEEQMERVH 146


>UniRef50_Q2SLB9 DnaK suppressor protein n=7 Tax=Gammaproteobacteria
           RepID=Q2SLB9_HAHCH
          Length = 141

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           SDE D A               EQ  +  I +  ++I         C   G PI   R  
Sbjct: 60  SDENDRASREEQSAIALRIVDREQKLLPKIQQSLKRIRLGTYG--YCLESGEPIGIPRLL 117

Query: 51  IFPGVTLCVECQAYQERQRKHY 72
             P    C E +A +E +  HY
Sbjct: 118 ARPTAEYCAEVKALKEIKEHHY 139


>UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE
          Length = 149

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 13/75 (17%)

Query: 2   SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
           SDE D +    E              +  I     +++     V  C  C  PI   R  
Sbjct: 59  SDEGDLSQQHHEEWIFLNRNTIDMKLLREIADALHRMDTGHYGV--CPECEEPISAKRLD 116

Query: 51  IFPGVTLCVECQAYQ 65
             P    CV CQ   
Sbjct: 117 AVPWARYCVTCQEKI 131


>UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879
           RepID=C3XG00_9HELI
          Length = 122

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D++     Q  M  I+    K +       +CE C + I   R +  P    C+ C+  
Sbjct: 54  FDDSMLERNQKEMKEISASLAKFDDGIYG--ICEMCEDEIGIERLQAKPHARFCINCREI 111

Query: 65  QERQRKH 71
            E+  K 
Sbjct: 112 YEKSEKQ 118


>UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula
           baltica RepID=Q7UEL7_RHOBA
          Length = 121

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 9   YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            + +E   +  I    +++         CE CG  IP  R ++ P    CV CQ   E
Sbjct: 59  MAESESRELADIEEALERLRDGTFG--DCEDCGKSIPMNRLQVVPHARRCVRCQKASE 114


>UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SPR7_HAHCH
          Length = 107

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D+   A  V  ++ +  + +  Q++      V  C ACG  IPE+R ++ P   LCV C 
Sbjct: 46  DDVLNALKVETEIEINQVKKALQRLQQGEYGV--CVACGEDIPESRLQVLPFAELCVSCA 103

Query: 63  AYQE 66
           +  E
Sbjct: 104 SKSE 107


>UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium
           ochraceum DSM 14365 RepID=D0LUD2_HALO1
          Length = 127

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72
           E   +  I+   +++ A    +  CE CG  I   R    P  TLC++C++ +E+  +  
Sbjct: 64  ETFLLNKIDAALERLKAGT--IDECEECGGEISVQRLIARPVTTLCIDCKSEREQSEEGR 121

Query: 73  A 73
            
Sbjct: 122 T 122


>UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema
           denticola RepID=Q73KX9_TREDE
          Length = 119

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 3   DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D AD A   T++  +             I+   ++I         C  C   IPE R K 
Sbjct: 42  DFADLASYSTDRDMLEFIGENNVKKLQKIDSALERIREGKYGK--CITCKEQIPEDRLKA 99

Query: 52  FPGVTLCVECQAYQERQ 68
            P    C+ CQA  E++
Sbjct: 100 LPYALKCIHCQAKSEKK 116


>UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum
          intermedium LMG 3301 RepID=C4WG44_9RHIZ
          Length = 76

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 6  DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
          + A    EQ    GI   R  +         C  CG+ I   RR   P    CV+CQ   
Sbjct: 9  ELADMRAEQERDAGIAAARAPLKQT--GTLDCIRCGDEIEAERRAALPSARRCVDCQESF 66

Query: 66 ERQR 69
          ER +
Sbjct: 67 ERWQ 70


>UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella
          RepID=Q0HYS5_SHESR
          Length = 68

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D         E            K          C  CG+ IPE RR+   GV LCV CQ
Sbjct: 5  DLVTREQLRAEHRFEQQRKAQAAKPVP--PSATDCAECGDEIPEGRRQAILGVRLCVTCQ 62

Query: 63 AYQERQ 68
           ++E Q
Sbjct: 63 TWRESQ 68


>UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A882_GEMAT
          Length = 127

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 1   MSDEADEAYSVT--------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D+  +A            E   +  +++  +++         C  CG  I   R    
Sbjct: 49  MADQGTDAMEREKAFLFASKEGRFLWHLDQALRRLYKAPATFGKCHQCGEDIAFERLDAL 108

Query: 53  PGVTLCVECQAYQERQRK 70
           P    C+ C+  +E  +K
Sbjct: 109 PNARYCIACKQREEDAKK 126


>UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ
          Length = 216

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           E D   S   +  +  I    +KI         CE+CG  I   R    P    C+ C
Sbjct: 60  EKDTTLSNLREQKLREIEIALEKIANGDYGK--CESCGKEINNERLDAVPYTRYCISC 115


>UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS
          Length = 157

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E + + +  E   +  +    ++I      V  C+ CG  IP+AR    P  T CV C+ 
Sbjct: 67  ETNLSLAAREGKYLVYLEEALKRIKNGTFGV--CKICGQLIPKARLMAVPTATKCVNCKE 124

Query: 64  YQERQR 69
             +++ 
Sbjct: 125 ETKKKE 130


>UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1Q506_9BACT
          Length = 140

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1   MSDEADEAYSVTEQLTMTG--------INRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D   + Y     + +          I+   ++I        +CEAC   I   R K  
Sbjct: 65  MADVGTDNYERELMIELMQSGEDSVRSIDDALERIEEGTFG--ICEACEKKINRERLKAV 122

Query: 53  PGVTLCVECQAYQE 66
           P  +LCV CQ  +E
Sbjct: 123 PYASLCVNCQREEE 136


>UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium
           minutum Pei191 RepID=B2KE71_ELUMP
          Length = 258

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 3   DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           D  D A    ++  +             I    +KI+        CE C   +P+ R K 
Sbjct: 184 DPIDTATQSLDKEILFEQTDNSHTQIDQIESALRKIDKGIYGK--CENCRQLLPKKRIKA 241

Query: 52  FPGVTLCVECQAYQE 66
            P    CV CQ+ +E
Sbjct: 242 LPFARYCVVCQSSKE 256


>UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter
           RepID=Q39WX5_GEOMG
          Length = 130

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            A +   +  +T ++    ++         C+ CG  I E R ++ P    C+ CQ  +E
Sbjct: 63  MAVADIRRQELTRMDEALGRLKEGRYG--FCDECGAEIDEGRLRVAPYAPCCISCQTRRE 120


>UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4
          RepID=B9JYG7_AGRVS
          Length = 72

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 5  ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
           + A    EQ     +   R  +         C  CG  IP+ARR  +P    C +CQ  
Sbjct: 7  FELAEERIEQERDAKVAAARADLKKA--GATECLDCGRAIPQARRFAYPSAIRCFDCQVS 64

Query: 65 QERQ 68
           ER+
Sbjct: 65 IERE 68


>UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C5L2_SPHTD
          Length = 132

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 16  TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
            +  ++    ++      V  C  CG  I  AR K  P  T C+ CQ + E +
Sbjct: 79  ELAEVDAALDRLERGTYGV--CIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129


>UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subtilis group
           RepID=G16O_BACSU
          Length = 163

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
           D+     ++  +  +NR  QK+      V  CE  G  IP  R +  P   + VE QA  
Sbjct: 60  DQTVKEIDRELLEEVNRALQKMKDGTYGV--CEKTGQEIPYERLEAVPYARMTVEAQADV 117

Query: 66  E 66
           E
Sbjct: 118 E 118


>UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella
           koreensis DSM 16069 RepID=C7R8Q8_KANKD
          Length = 120

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M     EA    ++  +  + +  ++I         C  C  PI   R ++ P   LC++
Sbjct: 52  MDQAMSEASVERDKKRLVAVRKALKRIEEGQYG--FCLECDEPISAKRLEVAPETELCLD 109

Query: 61  CQAYQERQRK 70
           CQ+++E   +
Sbjct: 110 CQSFKEEHDR 119


>UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6Q9W6_SULNB
          Length = 118

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D A    ++  +  I+    KI        +CE C  PI +AR ++      C+ C+  
Sbjct: 55  VDSAILEQQRKELAEIDLALDKIKNGTYG--ICEMCEEPIGKARLEVKNFARFCITCREI 112

Query: 65  QERQRK 70
            E++++
Sbjct: 113 NEKEQQ 118


>UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia
           profundicola AmH RepID=B9L783_NAUPA
          Length = 117

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 3   DEADEAYSVTEQLTMTGI-----------NRIRQKINAHGIPVYLCEACGNPIPEARRKI 51
           DEAD A +  +      I           N   +KI+       +CE C +PI EAR KI
Sbjct: 41  DEADFAAASMDSGRDYQIYINQKKELEEINDALKKIDEGTFG--ICEMCEDPIQEARLKI 98

Query: 52  FPGVTLCVECQAYQERQRK 70
            P    C+ C+   E++ K
Sbjct: 99  KPYAKYCIICREIIEKEGK 117


>UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia
           RepID=B2UIX3_RALPJ
          Length = 120

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 14  QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
           +  +  +N  R+++  H     +C  CG  IP  R +  P    C+ CQ   ER+
Sbjct: 66  RSELEQLNAARERMQQHSYG--ICVDCGEAIPFLRLQAQPTAMRCLPCQTACERR 118


>UniRef50_A0AZX7 Transcriptional regulators, TraR/DksA family n=38 Tax=Burkholderia
           RepID=A0AZX7_BURCH
          Length = 130

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           + D A    +   +  I R +Q++         C  C   +   R    P    C  CQ+
Sbjct: 59  DVDHALIGMKLTELRAIGRAQQRMRDGSYG--ECIDCDGSVGYERLLARPTAERCTHCQS 116

Query: 64  YQERQ 68
             ER+
Sbjct: 117 LYERR 121


>UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL
          Length = 245

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 6   DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           D A +   +L +  +    ++I         C  CG PI   R +  P    C +
Sbjct: 66  DLALAEHHELHLARVEDALERIEDGSYG--YCATCGKPISYERLRAIPETAYCKD 118


>UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6C001_9PLAN
          Length = 141

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 9   YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            +  E   +  I R    I         CE+C   IP AR K  P    CV C   +E
Sbjct: 49  LAEIEYKELMQIRRAISLIQEGRYG--HCESCNKNIPIARLKAVPYAMFCVSCAEQRE 104


>UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12E87_POLSJ
          Length = 134

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 5   ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64
            D A    EQ+    + R+    N        C  CG  I   R    P    C  CQA 
Sbjct: 65  VDHAAHELEQVL-AALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQAI 123

Query: 65  QERQRK 70
            E +R+
Sbjct: 124 HEHERQ 129


>UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1
           Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT
          Length = 116

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 13  EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           ++  +  I    ++I        +CE C  PI E R KI P    C+ C+   E++ K
Sbjct: 61  QKQELKEIEEALKRIEEGSYG--ICEMCDEPIQEERLKIKPYAKYCIICREIIEKEEK 116


>UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE
          Length = 136

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 9   YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            S  +  T+  ++   ++I         C  CG PI  AR +  P    C   Q   E
Sbjct: 70  NSSVDSETLQQVDDALRRIEQGSYGK--CVICGKPIEPARLEAIPWTPYCKADQERLE 125


>UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD
          Length = 130

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63
           E D    +  +  +  + R  QKI      V  C+  G PIP+ R +  P     VE Q 
Sbjct: 63  EMDATVGLQTRRRLEDVERALQKIEEGTYGV--CDDTGEPIPKGRLEAMPEAIRTVEAQQ 120

Query: 64  YQERQRK 70
             +R R+
Sbjct: 121 RHDRVRR 127


>UniRef50_B8H0C0 DnaK suppressor protein homolog n=110 Tax=Bacteria RepID=DKSA_CAUCN
          Length = 142

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52
           +D AD A S T++         ++K+ +                CE  G PI  AR +  
Sbjct: 60  ADLADRASSETDRALELRTRDRQRKLISKIDQALRRVEDGSYGYCEETGEPIGLARLEAR 119

Query: 53  PGVTLCVECQ 62
           P  T+ VE Q
Sbjct: 120 PTATMSVEAQ 129


>UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12HC6_POLSJ
          Length = 130

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
             +Q  +  I + ++++         C  CG PIP  R K  P  + C+ CQ   E+ R
Sbjct: 66  QRDQEELRAIQQAQERMADGSYGG--CIDCGQPIPFERLKAQPSASRCIACQTRFEQGR 122


>UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacter
           RepID=Q7VGT4_HELHP
          Length = 118

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 20  INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
           I    QKI      V  CE C + I   R K+ P    C+ C+   E+ +K
Sbjct: 67  IRNALQKIKDGTFGV--CEMCDDEIDVERLKVKPHAKYCINCRELFEQTQK 115


>UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID=B0SIE7_LEPBA
          Length = 154

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 1   MSDEADEAYS-----------VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49
           M D AD A               E  T+  I    +KI        +CE     IP AR 
Sbjct: 52  MGDIADIASELNSEALTSVLTENEIETLREIELALEKIENGTYG--ICEGTKKKIPLARL 109

Query: 50  KIFPGVTLCVECQAYQERQRKHYA 73
           K  P     VE       + ++ A
Sbjct: 110 KAIPWTRFTVEFAEQM-AKSRNRA 132


>UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 Tax=Akkermansia
           muciniphila ATCC BAA-835 RepID=B2ULP7_AKKM8
          Length = 207

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 4   EADEAYSV--TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           + D A S+   EQ  +  I +   +I+       +CE     IP  R +  P   L VEC
Sbjct: 110 DRDFALSLLSKEQDGLYEIEQALARIDNGTYG--ICEMSYKVIPILRLEAIPFARLTVEC 167

Query: 62  QAYQERQR 69
           QA  E+++
Sbjct: 168 QAQWEKEK 175


>UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9
           Tax=Campylobacterales RepID=A0RMM0_CAMFF
          Length = 122

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 2   SDEADEAYSVTEQLTMTGI-NRIRQKINAHGIP--------VYLCEACGNPIPEARRKIF 52
           SDE D A    + +    I  + R ++N               +C+ C + I   R K+ 
Sbjct: 40  SDEFDFASINADAILEHSISAKQRSELNEIDESLKKIANRTYGICDMCEDEIDIERLKVK 99

Query: 53  PGVTLCVECQAYQERQRKH 71
           P    C+ C+   E+  K+
Sbjct: 100 PNAKYCITCREIIEKNNKN 118


>UniRef50_UPI0001AEC064 DnaK suppressor protein n=1 Tax=Alteromonas macleodii ATCC 27126
           RepID=UPI0001AEC064
          Length = 140

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 9/79 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIFP 53
           DE D A    E      I    +K+                  C   G PI   R  I P
Sbjct: 57  DEVDRAQYEEESRLSLRILDRERKLLPKIDKSLRRIKDKSFGYCLETGEPIGIPRLLIRP 116

Query: 54  GVTLCVECQAYQERQRKHY 72
               C + +   E + +HY
Sbjct: 117 VSEYCADVKMVNEGREQHY 135


>UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4
           Tax=Anaeromyxobacter RepID=B4UII3_ANASK
          Length = 144

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69
             ++  +  I+    +I+A      +C  C   I   R    P   LC EC   +ER +
Sbjct: 78  ENQRRELVQIDAAIARIDAGEYG--ICRDCEQDIDPRRLAALPYAVLCTECAQRRERAQ 134


>UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora
           aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO
          Length = 103

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65
            T +  +    +  ++++     V  CE CG  IP AR +I P    CV CQ  +
Sbjct: 51  ETARQGVADTAQALKRMSEGTYGV--CERCGQDIPTARLEILPSARFCVPCQQRR 103


>UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LMB8_SYNFM
          Length = 122

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAH---------GIPVYLCEACGNPIPEARRKIFP 53
           DE D     TEQ  +  ++   +++                 +CE CG  I   R K  P
Sbjct: 42  DEVDRTSIRTEQEFLLHMHCRNERLVQEILNGLQRIRTGDFGVCEECGKDIELNRLKAHP 101

Query: 54  GVTLCVECQAYQERQRK 70
             T C++C+   ER+ +
Sbjct: 102 SATQCIKCKKAAERKAR 118


>UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas
           arsenicoxydans RepID=A4G7K6_HERAR
          Length = 106

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
             + D+A    E + +  I    ++I+ H   +  C  CG  I  AR +  P    C +C
Sbjct: 40  PTDVDDAMIKMELVELADIEAAHRRIDNHQYGL--CIDCGCTIDYARLQASPTAKRCTQC 97

Query: 62  QAYQERQ 68
           Q   E++
Sbjct: 98  QRLHEQR 104


>UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2
           Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU
          Length = 131

 Score = 52.2 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 8   AYSVTEQLTMTG-INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
           A  V  Q+     +    +++         C  CG  I   R  ++P    CV CQ   E
Sbjct: 63  ANLVDRQVNEMREVEAALKRLADLDYG--DCIDCGGEIGFDRLMVYPTAQRCVRCQEVHE 120

Query: 67  RQRKH 71
           +   H
Sbjct: 121 KTYMH 125


>UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UB56_9DELT
          Length = 116

 Score = 52.2 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 2   SDEADEAYSVTEQLTMTGINRIR-----------QKINAHGIPVYLCEACGNPIPEARRK 50
            DE D A  + +Q     + R R           +++         C+ CG+PI  AR K
Sbjct: 35  PDETDFATQLAQQGVNLAMQRRRMARIKEYECAIKRLRETDYGT--CDECGDPIGLARLK 92

Query: 51  IFPGVTLCVECQAYQERQR 69
             P   LC+ CQ+  E + 
Sbjct: 93  ANPSARLCIVCQSAAEEED 111


>UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6HWS3_9BACT
          Length = 121

 Score = 52.2 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 13/80 (16%)

Query: 2   SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50
            D AD A               E+  +  I+   ++I        +CE CG  I E R  
Sbjct: 38  PDPADLASVEEIQGFSYRLKEREKKLLRKIDEALERIEEG--SFGICERCGEAIEEKRML 95

Query: 51  IFPGVTLCVECQAYQERQRK 70
             P  T C+ C+   E   +
Sbjct: 96  ARPVTTYCIACKTILEEAER 115


>UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magnetospirillum
           magneticum AMB-1 RepID=Q2W8C2_MAGSA
          Length = 128

 Score = 52.2 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 3   DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
           D+ D A    E      +  +  ++        +C+ C +PI   R  + P    C  C 
Sbjct: 52  DDIDCAAERIEAFRDVALKAVLNRMTGPRSS-GICKTCYDPIEPQRIAVNPHARHCSFCA 110

Query: 63  AYQERQRKH 71
           A +E+ ++ 
Sbjct: 111 AEEEQAQRQ 119


>UniRef50_B1J6V4 Transcriptional regulator, TraR/DksA family n=4 Tax=Pseudomonas
           RepID=B1J6V4_PSEPW
          Length = 143

 Score = 52.2 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 11  VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70
             E+  +  I+   ++++        C+  G PI   R  + P  TL +E +  QER+ +
Sbjct: 81  EREKKLLDKIDEALERLSRGEYG--WCKETGEPIGLRRLLLRPTATLSIEAKERQERRER 138

Query: 71  H 71
           H
Sbjct: 139 H 139


>UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI
          Length = 119

 Score = 52.2 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 1   MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           M +  D          +  I R  +KI        +CE C  PI   R K  P    C+ 
Sbjct: 49  MKNTLDGLIFEHHHKELEYIERALEKIENGEYG--ICEMCDEPISIQRLKAKPHARFCII 106

Query: 61  CQAYQERQRKHY 72
           C+   E+  K  
Sbjct: 107 CREIVEKDLKGR 118


>UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis
           ATCC 14672 RepID=UPI0001AEFD73
          Length = 111

 Score = 51.8 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 2   SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61
           +D+         +  +T I+    +++        C+ CG  IP  R +I P    CV C
Sbjct: 49  ADDLLMMQKYAVRQALTDIDAAFTRLDEGTYGT--CQGCGRDIPVERLEILPYARCCVPC 106

Query: 62  QA 63
           Q 
Sbjct: 107 QQ 108


>UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
          RepID=Q2SPX6_HAHCH
          Length = 78

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 3  DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62
          D  D+A  + E+L  + + R R            C  C + IP  R++   GV+ CVEC+
Sbjct: 4  DILDQAAELQERLNASALARQRAGSALGQPSRAHCIDCEDAIPPLRQQ-LGGVSRCVECE 62

Query: 63 AYQERQRKH 71
           Y +  ++ 
Sbjct: 63 DYYQHAQRQ 71


>UniRef50_D1C0D4 Transcriptional regulator, TraR/DksA family n=2 Tax=Micrococcineae
           RepID=D1C0D4_XYLCX
          Length = 157

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12  TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68
             +  +       ++I A       CE  G PI +AR + FP  TL VE +A +ER+
Sbjct: 103 NMRDLLAQTKHAIERIKAGTYAT--CEMTGLPIGKARLQAFPRATLSVEAKAREERR 157


>UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfuromonas
           acetoxidans DSM 684 RepID=Q1JWV8_DESAC
          Length = 139

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 15  LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHYA 73
             +  IN    +I         C   G  I   R   +P   L VE Q  +E + + +A
Sbjct: 79  RLLAQINAALLRIKEGSYG--YCVETGEEIGLRRLLAYPAAFLLVEVQEAREHRSRSFA 135


>UniRef50_P42408 Uncharacterized protein yteA n=2 Tax=Bacillus subtilis group
           RepID=YTEA_BACSU
          Length = 239

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57
           E D A  + E+  +  I    + I        +CE  G  IP  R +  P  T 
Sbjct: 63  EKDIALDLHEREHLRDIEHSLKAIENGTYG--ICEVSGKEIPFERLEALPTATT 114


>UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Streptosporangium roseum DSM 43021
           RepID=D2B0C3_STRRD
          Length = 110

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 7   EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66
            A  V+ +  +  + +  + +         C+ CG  IP  R K  P    C+ CQ   E
Sbjct: 51  LADIVSAERNLAVVRQALRDVTELTYGR--CDGCGLAIPFERLKARPLARFCMLCQRRHE 108

Query: 67  RQ 68
            +
Sbjct: 109 SR 110


>UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8ESP2_OCEIH
          Length = 224

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 4   EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
           E D A     +  +  IN     I        +C  CG  IP  R +  P    CV+
Sbjct: 62  EKDIALQEHTEKELEDINAALHAIEEGTYG--ICTVCGEDIPHERLEAIPTTDRCVK 116


>UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V318_9AQUI
          Length = 133

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 19 GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67
           I+   ++I+        CE CG PI E R +  P  TLC E     E+
Sbjct: 52 KIDEALERISEGTYG--YCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98


>UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 Tax=Opitutaceae
           RepID=B1ZV03_OPITP
          Length = 297

 Score = 51.8 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 1   MSD------EADEAYSV--TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52
           M+D      + D A S+  +EQ  +T I+   ++I+       +CE    PI + R    
Sbjct: 195 MADAGTDTFDRDFALSLVSSEQEALTEIDAAIKRIHDGTYG--ICEITQKPIAKERLLAV 252

Query: 53  PGVTLCVECQAYQERQR 69
           P      E Q   E+ R
Sbjct: 253 PFTRYSAEAQKDLEKNR 269


>UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter
          actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD
          Length = 72

 Score = 51.4 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 1  MSDEADEAYSVTEQLTM--TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58
          M+D  D+     E +           Q+          C  CG  I  +R K  P    C
Sbjct: 1  MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60

Query: 59 VECQAYQERQRK 70
          + CQ   E  +K
Sbjct: 61 ISCQQLHEESQK 72


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.308    0.149    0.563 

Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,232,359
Number of Sequences: 3077464
Number of extensions: 16641367
Number of successful extensions: 69769
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 694
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 68851
Number of HSP's gapped (non-prelim): 843
length of query: 73
length of database: 1,040,396,356
effective HSP length: 44
effective length of query: 29
effective length of database: 904,987,940
effective search space: 26244650260
effective search space used: 26244650260
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 88 (38.3 bits)
