Phyre 2 Results for P41065

Email | l.a.kelley@imperial.ac.uk
Description | P41065
Date | Thu Jan 5 12:01:22 GMT 2012
Unique Job ID | f9c61ee2af6d59b6

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1tjlD_ |
|  | 99.8 | 27 | PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli
2 | c2kgoA_ |
|  | 99.8 | 36 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402
3 | c2kq9A_ |
|  | 99.6 | 32 | PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888
4 | d1tjla2 |
|  | 99.6 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Prokaryotic DksA/TraR C4-type zinc finger
5 | c2gviA_ |
|  | 76.3 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution
6 | d1tjla1 |
|  | 72.4 | 20 | Fold:Long alpha-hairpin Superfamily:DnaK suppressor protein DksA, alpha-hairpin domain Family:DnaK suppressor protein DksA, alpha-hairpin domain
7 | c3mhsE_ |
|  | 67.8 | 45 | PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
8 | c2b0oF_ |
|  | 67.0 | 19 | PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain
9 | c2owaB_ |
|  | 66.5 | 15 | PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
10 | c2p57A_ |
|  | 66.3 | 25 | PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
11 | c3jueA_ |
|  | 64.5 | 29 | PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
12 | c3d00A_ |
|  | 59.6 | 40 | PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
13 | c3lvrE_ |
|  | 59.3 | 17 | PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
14 | d1dcqa2 |
|  | 54.6 | 21 | Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain
15 | c1dcqA_ |
|  | 48.6 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
16 | c2iqjB_ |
|  | 46.4 | 18 | PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
17 | c3fehA_ |
|  | 43.2 | 21 | PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1
18 | d1rutx1 |
|  | 39.3 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
19 | c2d9lA_ |
|  | 39.0 | 12 | PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip
20 | c3dwdB_ |
|  | 38.3 | 18 | PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1
21 | c3o47A_ |
| not modelled | 32.4 | 23 | PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein
22 | d1j2oa1 |
| not modelled | 31.3 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
23 | d1rutx3 |
| not modelled | 27.9 | 43 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
24 | d1wyha1 |
| not modelled | 27.6 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
25 | d1x4ka1 |
| not modelled | 27.5 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
26 | d1xpaa2 |
| not modelled | 26.4 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
27 | d2cura1 |
| not modelled | 24.9 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
28 | d1x3ha1 |
| not modelled | 19.1 | 25 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
29 | c2d8xA_ |
| not modelled | 17.9 | 21 | PDB header:structural protein, cell cycle Chain: A: PDB Molecule:protein pinch; PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch)
30 | d2cora1 |
| not modelled | 16.9 | 29 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
31 | c2curA_ |
| not modelled | 16.4 | 24 | PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of skeletal muscle lim-protein 1
32 | c2d8zA_ |
| not modelled | 16.3 | 21 | PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2)
33 | c3na7A_ |
| not modelled | 16.3 | 15 | PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
34 | d2cupa3 |
| not modelled | 15.2 | 44 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
35 | d2dloa1 |
| not modelled | 13.3 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
36 | c1x4lA_ |
| not modelled | 13.1 | 18 | PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
37 | c2cuqA_ |
| not modelled | 12.9 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2
38 | c3f6qB_ |
| not modelled | 12.5 | 28 | PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:lim and senescent cell antigen-like-containing PDBTitle: crystal structure of integrin-linked kinase ankyrin repeat2 domain in complex with pinch1 lim1 domain
39 | d1twfj_ |
| not modelled | 12.3 | 33 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10
40 | d1x4la2 |
| not modelled | 12.3 | 56 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
41 | c1wyhA_ |
| not modelled | 12.3 | 24 | PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 2; PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2
42 | c1d4uA_ |
| not modelled | 12.3 | 20 | PDB header:dna binding protein Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
43 | c3h0gL_ |
| not modelled | 12.2 | 36 | PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe
44 | d2dara2 |
| not modelled | 11.9 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
45 | c2darA_ |
| not modelled | 11.8 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:pdz and lim domain protein 5; PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein
46 | d1ef4a_ |
| not modelled | 11.8 | 50 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10
47 | d1m3va1 |
| not modelled | 11.6 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
48 | c1j2oA_ |
| not modelled | 11.4 | 23 | PDB header:metal binding protein Chain: A: PDB Molecule:fusion of rhombotin-2 and lim domain-binding PDBTitle: structure of flin2, a complex containing the n-terminal lim2 domain of lmo2 and ldb1-lid
49 | c2pmzN_ |
| not modelled | 11.3 | 50 | PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
50 | c2ja6L_ |
| not modelled | 10.4 | 23 | PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b
51 | c1x63A_ |
| not modelled | 10.2 | 21 | PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1
52 | c2cu8A_ |
| not modelled | 10.2 | 10 | PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: solution structure of the lim domain of human cysteine-rich2 protein 2
53 | d1ee8a3 |
| not modelled | 9.7 | 36 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
54 | c2egqA_ |
| not modelled | 9.1 | 18 | PDB header:structural protein Chain: A: PDB Molecule:fhl1 protein; PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1
55 | c1x61A_ |
| not modelled | 9.0 | 16 | PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor interacting protein 6; PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6)
56 | c1x64A_ |
| not modelled | 8.9 | 14 | PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
57 | c2bzwB_ |
| not modelled | 8.7 | 67 | PDB header:transcription Chain: B: PDB Molecule:bcl2-antagonist of cell death; PDBTitle: the crystal structure of bcl-xl in complex with full-length2 bad
58 | c1x62A_ |
| not modelled | 8.6 | 25 | PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1
59 | c1x4kA_ |
| not modelled | 8.6 | 28 | PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in lim-protein 3
60 | c2l4zA_ |
| not modelled | 8.3 | 31 | PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82)
61 | c3a44D_ |
| not modelled | 8.2 | 20 | PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form
62 | c2d8yA_ |
| not modelled | 7.9 | 17 | PDB header:structural protein Chain: A: PDB Molecule:eplin protein; PDBTitle: solution structure of the lim domain of epithelial protein2 lost in neoplasm
63 | c2o10A_ |
| not modelled | 7.7 | 20 | PDB header:metal binding protein Chain: A: PDB Molecule:muscle lim protein; PDBTitle: solution structure of the n-terminal lim domain of mlp/crp3
64 | d1u5ka2 |
| not modelled | 7.6 | 33 | Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like
65 | c2iybG_ |
| not modelled | 7.4 | 36 | PDB header:metal-binding Chain: G: PDB Molecule:testin; PDBTitle: structure of complex between the 3rd lim domain of tes and2 the evh1 domain of mena
66 | c2i5oA_ |
| not modelled | 7.4 | 56 | PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta
67 | c1rutX_ |
| not modelled | 7.3 | 33 | PDB header:protein binding Chain: X: PDB Molecule:fusion protein of lmo4 protein and lim domain- PDBTitle: complex of lmo4 lim domains 1 and 2 with the ldb1 lid domain
68 | d2czra1 |
| not modelled | 7.3 | 27 | Fold:Restriction endonuclease-like Superfamily:TBP-interacting protein-like Family:TBP-interacting protein-like
69 | d1xx6a2 |
| not modelled | 7.3 | 63 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger
70 | c2dloA_ |
| not modelled | 7.2 | 29 | PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor-interacting protein 6; PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6
71 | c1ibiA_ |
| not modelled | 6.8 | 24 | PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures
72 | c3q8dB_ |
| not modelled | 6.7 | 25 | PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus
73 | c1x68A_ |
| not modelled | 6.6 | 33 | PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
74 | c1x3hA_ |
| not modelled | 6.6 | 14 | PDB header:metal binding protein Chain: A: PDB Molecule:leupaxin; PDBTitle: solution structure of the lim domain of human leupaxin
75 | c2qgpA_ |
| not modelled | 6.4 | 33 | PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.
76 | d1v6ga1 |
| not modelled | 6.4 | 38 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
77 | c2ko5A_ |
| not modelled | 6.4 | 40 | PDB header:transcription Chain: A: PDB Molecule:ring finger protein z; PDBTitle: nmr solution structure of lfv-z
78 | d2ak3a2 |
| not modelled | 6.3 | 20 | Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
79 | d2cuqa1 |
| not modelled | 6.2 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
80 | c2xjyA_ |
| not modelled | 6.2 | 25 | PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2; PDBTitle: crystal structure of the lmo2:ldb1-lid complex, p21 crystal2 form
81 | d2d8za2 |
| not modelled | 6.0 | 24 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
82 | d1e4va2 |
| not modelled | 6.0 | 10 | Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
83 | c2f9iD_ |
| not modelled | 5.9 | 17 | PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus
84 | d1l1ta3 |
| not modelled | 5.9 | 63 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
85 | d1x63a2 |
| not modelled | 5.7 | 21 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
86 | c1a7iA_ |
| not modelled | 5.7 | 17 | PDB header:lim domain containing proteins Chain: A: PDB Molecule:qcrp2 (lim1); PDBTitle: amino-terminal lim domain from quail cysteine and glycine-2 rich protein, nmr, minimized average structure
87 | d1bboa1 |
| not modelled | 5.6 | 67 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
88 | d1k3xa3 |
| not modelled | 5.6 | 63 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
89 | d1rzsa_ |
| not modelled | 5.6 | 38 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
90 | c1loiA_ |
| not modelled | 5.5 | 50 | PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures
91 | c1m3vA_ |
| not modelled | 5.5 | 27 | PDB header:metal binding protein Chain: A: PDB Molecule:fusion of the lim interacting domain of ldb1 and PDBTitle: flin4: fusion of the lim binding domain of ldb1 and the n-2 terminal lim domain of lmo4
92 | d2d8ua1 |
| not modelled | 5.5 | 33 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
93 | c2l3kA_ |
| not modelled | 5.4 | 33 | PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid)
94 | d1k82a3 |
| not modelled | 5.3 | 63 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
95 | c1b8tA_ |
| not modelled | 5.3 | 16 | PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1
96 | d1wjva2 |
| not modelled | 5.2 | 50 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger
97 | d1zina2 |
| not modelled | 5.2 | 33 | Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
98 | c2jtnA_ |
| not modelled | 5.2 | 19 | PDB header:protein binding/transcription Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex
99 | d1u5sb1 |
| not modelled | 5.1 | 56 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain