Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	N	L	P	K	F	S	T	A	L	L	H	P	R	Y	W	L	T	W	L	G	I	G	V	L	W	L	V	V	Q	L	P	Y	P	V	I	Y	R	L	G	C	G	L	G	K	L	A	L	R	F	M	K	R	R	A	K	I	V	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	N	L	E	L	C	F	P	E	M	S	E	Q	E	R	R	K	M	V	V	K	N	F	E	S	V	G	M	G	L	M	E	T	G	M	A	W	F	W	P	D	R	R	I	A	R	W	T	E	V	I	G	M	E	H	I	R	D	V	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	Q	K	R	G	I	L	L	V	G	I	H	F	L	T	L	E	L	G	A	R	Q	F	G	M	Q	E	P	G	I	G	V	Y	R	P	N	D	N	P	L	I	D	W	L	Q	T	W	G	R	L	R	S	N	K	S	M	L	D	R	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	L	K	G	M	I	K	A	L	K	K	G	E	V	V	W	Y	A	P	D	H	D	Y	G	P	R	S	S	V	F	V	P	L	F	A	V	E	Q	A	A	T	T	T	G	T	W	M	L	A	R	M	S	G	A	C	L	V	P	F	V
Secondary structure
SS confidence
Disorder																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	R	R	K	P	D	G	K	G	Y	Q	L	I	M	L	P	P	E	C	S	P	P	L	D	D	A	E	T	T	A	A	W	M	N	K	V	V	E	K	C	I	M	M	A	P	E	Q	Y	M	W	L	H	R	R	F	K	T	R	P	E
Secondary structure
SS confidence
Disorder																				?																																									?
Disorder confidence
		.	.	.	.	.	.
Sequence		G	V	P	S	R	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ltx chain A Region: 260 - 295 Aligned: 36 Modelled: 36 Confidence: 61.4% Identity: 19% PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Phyre2 PDB 2j5b chain A Region: 109 - 144 Aligned: 36 Modelled: 36 Confidence: 48.5% Identity: 11% PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Phyre2 PDB 3lub chain E Region: 114 - 135 Aligned: 22 Modelled: 22 Confidence: 48.4% Identity: 18% PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution Phyre2 PDB 3no4 chain A Region: 114 - 143 Aligned: 30 Modelled: 30 Confidence: 44.3% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution Phyre2 PDB 1hru chain A Region: 177 - 204 Aligned: 28 Modelled: 28 Confidence: 42.8% Identity: 25% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1v7z chain A Region: 114 - 143 Aligned: 30 Modelled: 30 Confidence: 38.1% Identity: 17% Fold: Creatininase Superfamily: Creatininase Family: Creatininase Phyre2 PDB 1tcv chain B Region: 189 - 287 Aligned: 92 Modelled: 99 Confidence: 36.1% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate Phyre2 PDB 3khs chain B Region: 188 - 287 Aligned: 91 Modelled: 100 Confidence: 35.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase Phyre2 PDB 3f6t chain A Region: 227 - 284 Aligned: 53 Modelled: 58 Confidence: 34.4% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Phyre2 PDB 3cwc chain B Region: 221 - 282 Aligned: 61 Modelled: 62 Confidence: 26.2% Identity: 8% PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 Phyre2 PDB 1jcu chain A Region: 178 - 204 Aligned: 27 Modelled: 27 Confidence: 25.2% Identity: 30% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1g9s chain A Region: 100 - 215 Aligned: 116 Modelled: 116 Confidence: 23.2% Identity: 15% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1k7j chain A Region: 178 - 200 Aligned: 23 Modelled: 23 Confidence: 20.6% Identity: 22% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1nj8 chain A domain 2 Region: 112 - 129 Aligned: 18 Modelled: 18 Confidence: 20.2% Identity: 33% Fold: IF3-like Superfamily: C-terminal domain of ProRS Family: C-terminal domain of ProRS Phyre2 PDB 2h3o chain A Region: 18 - 56 Aligned: 39 Modelled: 39 Confidence: 19.4% Identity: 18% PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices Phyre2 PDB 1jix chain A Region: 211 - 240 Aligned: 30 Modelled: 30 Confidence: 19.2% Identity: 3% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: beta-Glucosyltransferase (DNA-modifying) Phyre2 PDB 2adv chain B Region: 121 - 133 Aligned: 13 Modelled: 13 Confidence: 18.9% Identity: 31% PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism Phyre2 PDB 1d8d chain A Region: 275 - 295 Aligned: 21 Modelled: 21 Confidence: 16.6% Identity: 33% Fold: alpha-alpha superhelix Superfamily: Protein prenylyltransferase Family: Protein prenylyltransferase Phyre2 PDB 1r6u chain B Region: 111 - 136 Aligned: 26 Modelled: 26 Confidence: 16.3% Identity: 27% PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity Phyre2 PDB 2cyc chain B Region: 109 - 143 Aligned: 35 Modelled: 35 Confidence: 16.3% Identity: 23% PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Phyre2 1 c1ltxA_ 2 c2j5bA_ 3 c3lubE_ 4 c3no4A_ 5 d1hrua_ 6 d1v7za_ 7 c1tcvB_ 8 c3khsB_ 9 c3f6tA_ 10 c3cwcB_ 11 d1jcua_ 12 d1g9sa_ 13 d1k7ja_ 14 d1nj8a2 15 c2h3oA_ 16 d1jixa_ 17 c2advB_ 18 d1d8da_ 19 c1r6uB_ 20 c2cycB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ltxA_ 61.4 19 PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 2 c2j5bA_ 48.5 11 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol 3 c3lubE_ 48.4 18 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 4 c3no4A_ 44.3 7 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 5 d1hrua_ 42.8 25 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 6 d1v7za_ 38.1 17 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 7 c1tcvB_ 36.1 18 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 8 c3khsB_ 35.9 15 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 9 c3f6tA_ 34.4 15 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution 10 c3cwcB_ 26.2 8 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 11 d1jcua_ 25.2 30 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 12 d1g9sa_ 23.2 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 13 d1k7ja_ 20.6 22 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 14 d1nj8a2 20.2 33 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 15 c2h3oA_ 19.4 18 PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices 16 d1jixa_ 19.2 3 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:beta-Glucosyltransferase (DNA-modifying) 17 c2advB_ 18.9 31 PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism 18 d1d8da_ 16.6 33 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 19 c1r6uB_ 16.3 27 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity 20 c2cycB_ 16.3 23 PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii 21 c2b8eB_ not modelled 15.6 30 PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain 22 d1vmka_ not modelled 15.4 13 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 23 d1j7ja_ not modelled 14.7 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 24 c3ihjA_ not modelled 14.6 19 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 25 d1nj1a2 not modelled 14.5 27 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 26 c2zy3A_ not modelled 14.3 9 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 27 d1regx_ not modelled 14.0 13 Fold:Ferredoxin-like Superfamily:Translational regulator protein regA Family:Translational regulator protein regA 28 d1pq4a_ not modelled 13.2 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 29 d1tuwa_ not modelled 13.2 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Polyketide synthesis cyclase 30 c2rjnA_ not modelled 13.1 7 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 31 d2pi8a1 not modelled 12.3 20 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 32 c3l6gA_ not modelled 12.2 12 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 33 c2eqaA_ not modelled 12.2 19 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 34 d1j1ua_ not modelled 11.8 25 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 35 d1v4na_ not modelled 11.7 16 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 36 d3eeqa2 not modelled 11.5 13 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 37 d1cb0a_ not modelled 11.4 15 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 38 d2h6fa1 not modelled 10.9 33 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 39 d1pyfa_ not modelled 10.8 10 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 40 c2cyaA_ not modelled 10.6 19 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix 41 d2dvta1 not modelled 10.5 22 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:PP1699/LP2961-like 42 d2ae0x1 not modelled 10.4 19 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 43 d1r6ta2 not modelled 10.4 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 44 d1a9xb1 not modelled 10.3 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain 45 d1d7ya2 not modelled 10.3 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 46 d1p3qq_ not modelled 10.2 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 47 d1snna_ not modelled 10.2 26 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 48 c1fcuA_ not modelled 10.1 21 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase 49 c3tmgA_ not modelled 9.9 17 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 50 c1yr3A_ not modelled 9.8 11 PDB header:transferase Chain: A: PDB Molecule:xanthosine phosphorylase; PDBTitle: escherichia coli purine nucleoside phosphorylase ii, the2 product of the xapa gene 51 c2cybA_ not modelled 9.6 32 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with2 l-tyrosine from archaeoglobus fulgidus 52 d1fcqa_ not modelled 9.6 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Bee venom hyaluronidase 53 d1iyjb4 not modelled 9.4 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 54 c2quiB_ not modelled 9.4 28 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structures of human tryptophanyl-trna synthetase in2 complex with tryptophanamide and atp 55 c1wazA_ not modelled 9.3 18 PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles 56 d2b8ea1 not modelled 9.0 18 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 57 c2yztA_ not modelled 9.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 58 d2g0ia1 not modelled 8.8 15 Fold:eIF1-like Superfamily:TM1457-like Family:TM1457-like 59 c3ggsA_ not modelled 8.7 14 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 60 c3ktsA_ not modelled 8.4 5 PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 61 c2pe4A_ not modelled 8.4 8 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis 62 d2o34a1 not modelled 8.4 7 Fold:T-fold Superfamily:ApbE-like Family:DVU1097-like 63 c1tnoI_ not modelled 8.3 28 PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b 64 d2lfba_ not modelled 8.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 d1xdfa1 not modelled 8.2 15 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 66 d1ubea1 not modelled 8.1 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 67 d1nkta4 not modelled 8.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 68 c3j08A_ not modelled 8.1 32 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 69 c3hbcA_ not modelled 7.9 32 PDB header:hydrolase Chain: A: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of choloylglycine hydrolase from bacteroides2 thetaiotaomicron vpi 70 d1fl2a2 not modelled 7.7 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 71 c3kdvB_ not modelled 7.5 35 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage response b protein; PDBTitle: crystal structure of dna damage response b (ddrb) from deinococcus2 geothermalis 72 c3iraA_ not modelled 7.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 73 c3m8yC_ not modelled 7.3 23 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 74 d1t6la1 not modelled 7.0 35 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 75 d1mkya3 not modelled 7.0 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 76 d1xhca2 not modelled 6.9 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 77 c2ip1A_ not modelled 6.8 24 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase 78 c3bgwD_ not modelled 6.8 10 PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase 79 d1qgna_ not modelled 6.8 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 80 d1dcea1 not modelled 6.7 33 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 81 d1gm5a4 not modelled 6.5 6 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 82 c3hh1D_ not modelled 6.5 21 PDB header:transferase Chain: D: PDB Molecule:tetrapyrrole methylase family protein; PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls 83 d1iuqa_ not modelled 6.5 17 Fold:Glycerol-3-phosphate (1)-acyltransferase Superfamily:Glycerol-3-phosphate (1)-acyltransferase Family:Glycerol-3-phosphate (1)-acyltransferase 84 c2dhyA_ not modelled 6.5 12 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 85 d1a3ca_ not modelled 6.4 10 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 86 c2ogxB_ not modelled 6.3 12 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 87 d1fa2a_ not modelled 6.3 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 88 d1vdca2 not modelled 6.3 7 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 89 d1uyra1 not modelled 6.3 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 90 c3focB_ not modelled 6.2 14 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia 91 d1vzya2 not modelled 6.1 20 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 92 c3ie5A_ not modelled 6.1 18 PDB header:plant protein, biosynthetic protein Chain: A: PDB Molecule:phenolic oxidative coupling protein hyp-1; PDBTitle: crystal structure of hyp-1 protein from hypericum perforatum2 (st john's wort) involved in hypericin biosynthesis 93 d3bgsa1 not modelled 6.1 12 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 94 d1e09a_ not modelled 6.1 15 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 95 c3hv0A_ not modelled 6.1 31 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum 96 c1w8xP_ not modelled 6.0 29 PDB header:virus Chain: P: PDB Molecule:protein p16; PDBTitle: structural analysis of prd1 97 d1fm4a_ not modelled 6.0 8 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 98 d1vlia2 not modelled 6.0 8 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 99 d1u94a1 not modelled 5.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0