Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	V	T	I	T	D	L	A	R	E	N	V	R	N	L	T	P	Y	Q	S	A	R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	N	R	Y	P	E	C	Q	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?													?	?			?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	A	V	I	E	N	Y	A	Q	Y	A	G	V	K	P	E	Q	V	L	V	S	R	G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S	P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	T	L	A	N	E	E	V	I	N	L	L	M	K	V	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	V	E	Q	V	F	D	S	E	T	N	Y	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Sequence		L	A	R	F	K	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E	Q	V
Secondary structure
SS confidence
Disorder																																																							?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fg7 chain A Region: 3 - 356 Aligned: 354 Modelled: 354 Confidence: 100.0% Identity: 99% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3euc chain B Region: 6 - 353 Aligned: 340 Modelled: 348 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution Phyre2 PDB 3ly1 chain C Region: 26 - 355 Aligned: 323 Modelled: 330 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution Phyre2 PDB 3ffh chain A Region: 11 - 354 Aligned: 339 Modelled: 344 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. Phyre2 PDB 3get chain A Region: 11 - 354 Aligned: 336 Modelled: 344 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution Phyre2 PDB 3hdo chain B Region: 10 - 355 Aligned: 333 Modelled: 346 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens Phyre2 PDB 3h14 chain A Region: 1 - 354 Aligned: 351 Modelled: 352 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi Phyre2 PDB 3cq6 chain E Region: 3 - 354 Aligned: 338 Modelled: 344 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) Phyre2 PDB 1lc5 chain A Region: 27 - 354 Aligned: 323 Modelled: 328 Confidence: 100.0% Identity: 21% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3p1t chain B Region: 32 - 355 Aligned: 310 Modelled: 324 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution Phyre2 PDB 3g0t chain A Region: 2 - 356 Aligned: 353 Modelled: 355 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Phyre2 PDB 3ftb chain A Region: 31 - 354 Aligned: 318 Modelled: 324 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum Phyre2 PDB 2f8j chain A domain 1 Region: 1 - 354 Aligned: 320 Modelled: 346 Confidence: 100.0% Identity: 29% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3ppl chain B Region: 4 - 353 Aligned: 348 Modelled: 348 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Phyre2 PDB 1b5p chain A Region: 1 - 354 Aligned: 351 Modelled: 354 Confidence: 100.0% Identity: 20% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3e2y chain B Region: 12 - 355 Aligned: 342 Modelled: 344 Confidence: 100.0% Identity: 17% PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine Phyre2 PDB 1o4s chain A Region: 6 - 356 Aligned: 346 Modelled: 351 Confidence: 100.0% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 2gb3 chain A domain 1 Region: 6 - 355 Aligned: 349 Modelled: 350 Confidence: 100.0% Identity: 20% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 3dzz chain B Region: 2 - 354 Aligned: 346 Modelled: 347 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Phyre2 PDB 3b46 chain B Region: 24 - 355 Aligned: 330 Modelled: 332 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae Phyre2 1 d1fg7a_ 2 c3eucB_ 3 c3ly1C_ 4 c3ffhA_ 5 c3getA_ 6 c3hdoB_ 7 c3h14A_ 8 c3cq6E_ 9 d1lc5a_ 10 c3p1tB_ 11 c3g0tA_ 12 c3ftbA_ 13 d2f8ja1 14 c3pplB_ 15 d1b5pa_ 16 c3e2yB_ 17 d1o4sa_ 18 d2gb3a1 19 c3dzzB_ 20 c3b46B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fg7a_ 100.0 99 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 2 c3eucB_ 100.0 26 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution 3 c3ly1C_ 100.0 24 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 4 c3ffhA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. 5 c3getA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 6 c3hdoB_ 100.0 27 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 7 c3h14A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi 8 c3cq6E_ 100.0 31 PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) 9 d1lc5a_ 100.0 21 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 10 c3p1tB_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 11 c3g0tA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution 12 c3ftbA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 13 d2f8ja1 100.0 29 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 14 c3pplB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution 15 d1b5pa_ 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 16 c3e2yB_ 100.0 17 PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine 17 d1o4sa_ 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 18 d2gb3a1 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 19 c3dzzB_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution 20 c3b46B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae 21 c3jtxB_ not modelled 100.0 20 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution 22 c3ihjA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 23 d1m7ya_ not modelled 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 24 c1ynuA_ not modelled 100.0 16 PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine 25 c3fkdC_ not modelled 100.0 21 PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis 26 d1iaya_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 27 c3eleB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution 28 c3ezsB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution 29 d1w7la_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 30 d1j32a_ not modelled 100.0 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 31 c2o1bA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus 32 c3l8aB_ not modelled 100.0 19 PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans 33 d1xi9a_ not modelled 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 34 d1wsta1 not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 35 c3qguB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii 36 c3eibB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana 37 d1bw0a_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 38 c2douA_ not modelled 100.0 23 PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 39 c3if2B_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution 40 c2zc0C_ not modelled 100.0 17 PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase 41 c3kaxB_ not modelled 100.0 18 PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis 42 c3ez1A_ not modelled 100.0 20 PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution 43 d1x0ma1 not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 44 d2r5ea1 not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 45 d1c7na_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 46 c2o0rA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis 47 d1u08a_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 48 d1vp4a_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 49 c3asaA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis 50 c2x5dD_ not modelled 100.0 20 PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa 51 c3cbfA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 52 d1v2da_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 53 c3dc1A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate 54 c3fdbA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution 55 c1d2fB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression 56 c3d6kB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae 57 d1gdea_ not modelled 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 58 c3t18D_ not modelled 100.0 15 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 59 c2z61A_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases 60 c3pdxA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase 61 d1d2fa_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 62 c3nraA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution 63 c3rq1A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula 64 c3op7A_ not modelled 100.0 20 PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution 65 c3dydB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase 66 c3g7qA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution 67 c2zy3A_ not modelled 100.0 17 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 68 c3k7yA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum 69 c3bwnF_ not modelled 100.0 17 PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase 70 c2x5fB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase 71 d2csta_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 72 d2q7wa1 not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 73 d2ay1a_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 74 d1ajsa_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 75 d7aata_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 76 d1yaaa_ not modelled 100.0 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 77 c3f6tA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution 78 d2hoxa1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 79 d3tata_ not modelled 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 80 c3mebB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia 81 d2aeua1 not modelled 100.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like 82 d1svva_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 83 d1vjoa_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 84 d1v72a1 not modelled 100.0 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 85 c3caiA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein 86 c3ffrA_ not modelled 100.0 13 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution 87 d2e7ja1 not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like 88 d1t3ia_ not modelled 100.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 89 d1iuga_ not modelled 100.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 90 c3hqtB_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 91 d1jf9a_ not modelled 100.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 92 d1m6sa_ not modelled 100.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 93 d1eg5a_ not modelled 100.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 94 c3f0hA_ not modelled 100.0 12 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 95 c2z9wA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal 96 d2bkwa1 not modelled 100.0 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 97 c3pj0D_ not modelled 100.0 12 PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution 98 c3islA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis 99 c3nnkC_ not modelled 100.0 14 PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway 100 c2yrrA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 101 c3e9kA_ not modelled 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex 102 c2w8wA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 103 d2bwna1 not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 104 d2ch1a1 not modelled 99.9 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 105 c3lwsF_ not modelled 99.9 12 PDB header:lyase Chain: F: PDB Molecule:aromatic amino acid beta-eliminating PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution 106 c3a2bA_ not modelled 99.9 14 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 107 c3nysA_ not modelled 99.9 12 PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution 108 c2dr1A_ not modelled 99.9 12 PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 109 c2huuA_ not modelled 99.9 15 PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine 110 d1gc0a_ not modelled 99.9 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 111 d1qz9a_ not modelled 99.9 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 112 d1h0ca_ not modelled 99.9 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 113 d1bs0a_ not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 114 c2po3B_ not modelled 99.9 14 PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product 115 d1m32a_ not modelled 99.9 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 116 d1kl1a_ not modelled 99.9 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 117 c3i4jC_ not modelled 99.9 15 PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans 118 c3ju7B_ not modelled 99.9 14 PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution 119 d1tpla_ not modelled 99.9 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 120 d1dfoa_ not modelled 99.9 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0