Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP09546
DateWed Jan 25 15:20:14 GMT 2012
Unique Job IDf64d1b763e685649

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3hazA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein
Confidence and coverage
Confidence:100.0% Coverage: 73%
965 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGA
Secondary structure 















SS confidence 



























































Disorder  ????

?















??


















????????



????
Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  ANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPV
Secondary structure 



































SS confidence 



























































Disorder  ???????????????
?????????????
























???


Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  AEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKAT
Secondary structure 
















SS confidence 



























































Disorder 















??????????

































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  RDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSG
Secondary structure 













SS confidence 



























































Disorder 








?
??


???

??












??

?
???












??
Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  EPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY
Secondary structure 











SS confidence 



























































Disorder  ?


























































Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  MVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLA
Secondary structure 


















SS confidence 



























































Disorder 













??????????



































Disorder confidence 



























































 
   .........370.........380.........390.........400.........410.........420
Sequence  RQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDL
Secondary structure 
















SS confidence 



























































Disorder 































?


























Disorder confidence 



























































 
   .........430.........440.........450.........460.........470.........480
Sequence  ATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLI
Secondary structure 
























SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........490.........500.........510.........520.........530.........540
Sequence  YPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIY
Secondary structure 






















SS confidence 



























































Disorder 



















??
???






















???







Disorder confidence 



























































 
   .........550.........560.........570.........580.........590.........600
Sequence  APVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGL
Secondary structure 
























SS confidence 



























































Disorder 

















































??????????
Disorder confidence 



























































 
   .........610.........620.........630.........640.........650.........660
Sequence  PHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEM
Secondary structure 







































SS confidence 



























































Disorder  ????
?
???????


























?

















Disorder confidence 



























































 
   .........670.........680.........690.........700.........710.........720
Sequence  SPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQ
Secondary structure 













SS confidence 



























































Disorder 






































??


















Disorder confidence 



























































 
   .........730.........740.........750.........760.........770.........780
Sequence  MQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNF
Secondary structure 













SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........790.........800.........810.........820.........830.........840
Sequence  PLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGA
Secondary structure 















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........850.........860.........870.........880.........890.........900
Sequence  QLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQ
Secondary structure 

























SS confidence 



























































Disorder 





























??????























Disorder confidence 



























































 
   .........910.........920.........930.........940.........950.........960
Sequence  VVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVI
Secondary structure 























SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  DSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVF
Secondary structure 




























SS confidence 



























































Disorder 



























??????

























Disorder confidence 



























































 
   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  GPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVG
Secondary structure 

























SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  AVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALT
Secondary structure 






































SS confidence 



























































Disorder 










?


?

?


















?
??????????






???
Disorder confidence 



























































 
   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  QPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDE
Secondary structure 


















SS confidence 



























































Disorder  ?
?
























???
???
























Disorder confidence 



























































 
   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  QDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHG
Secondary structure 




















SS confidence 



























































Disorder 














??????????





















??










Disorder confidence 



























































 
   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  DSDQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
Secondary structure 



















SS confidence 



























































Disorder 
























??





























???
Disorder confidence 



























































 
  
Sequence 
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3haz chain A

3D model

Region: 91 - 1123
Aligned: 965
Modelled: 999
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein

Phyre2

PDB 1k87 chain A

3D model

Region: 87 - 612
Aligned: 514
Modelled: 526
Confidence: 100.0%
Identity: 99%
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)

Phyre2

PDB 3e2s chain A

3D model

Region: 88 - 610
Aligned: 468
Modelled: 468
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure reduced puta86-630 mutant y540s complexed with l-2 proline

Phyre2

PDB 1tj2 chain A

3D model

Region: 88 - 610
Aligned: 450
Modelled: 449
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional puta protein;
PDBTitle: crystal structure of e. coli puta proline dehydrogenase domain2 (residues 86-669) complexed with acetate

Phyre2

PDB 3qan chain B

3D model

Region: 614 - 1116
Aligned: 494
Modelled: 503
Confidence: 100.0%
Identity: 35%
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1;
PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans

Phyre2

PDB 1uzb chain A

3D model

Region: 611 - 1116
Aligned: 496
Modelled: 506
Confidence: 100.0%
Identity: 37%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 3ed6 chain B

3D model

Region: 643 - 1125
Aligned: 469
Modelled: 483
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus

Phyre2

PDB 1a4s chain A

3D model

Region: 643 - 1125
Aligned: 470
Modelled: 483
Confidence: 100.0%
Identity: 25%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 2o2q chain A

3D model

Region: 648 - 1116
Aligned: 454
Modelled: 469
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp

Phyre2

PDB 2d4e chain B

3D model

Region: 630 - 1126
Aligned: 483
Modelled: 497
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde
PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8

Phyre2

PDB 2jg7 chain G

3D model

Region: 648 - 1131
Aligned: 465
Modelled: 484
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: G: PDB Molecule:antiquitin;
PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity

Phyre2

PDB 1bxs chain A

3D model

Region: 646 - 1113
Aligned: 451
Modelled: 460
Confidence: 100.0%
Identity: 30%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 2ve5 chain H

3D model

Region: 646 - 1114
Aligned: 456
Modelled: 467
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: H: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa

Phyre2

PDB 3iwk chain B

3D model

Region: 650 - 1123
Aligned: 458
Modelled: 474
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:aminoaldehyde dehydrogenase;
PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1)

Phyre2

PDB 3rh9 chain A

3D model

Region: 646 - 1116
Aligned: 454
Modelled: 471
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+));
PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei

Phyre2

PDB 1o9j chain A

3D model

Region: 641 - 1114
Aligned: 457
Modelled: 473
Confidence: 100.0%
Identity: 29%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 1t90 chain B

3D model

Region: 646 - 1116
Aligned: 455
Modelled: 471
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable methylmalonate-semialdehyde
PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis

Phyre2

PDB 1ag8 chain A

3D model

Region: 642 - 1113
Aligned: 455
Modelled: 472
Confidence: 100.0%
Identity: 28%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 1o04 chain A

3D model

Region: 645 - 1115
Aligned: 454
Modelled: 471
Confidence: 100.0%
Identity: 28%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2

PDB 3b4w chain A

3D model

Region: 648 - 1114
Aligned: 449
Modelled: 467
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+

Phyre2

PDB 2ay0 chain A domain 1

3D model

Region: 3 - 45
Aligned: 43
Modelled: 43
Confidence: 99.7%
Identity: 98%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: PutA pre-N-terminal region-like

Phyre2

PDB 2rbf chain B

3D model

Region: 4 - 48
Aligned: 45
Modelled: 45
Confidence: 99.5%
Identity: 100%
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)

Phyre2
1

c3hazA_
2

c1k87A_
3

c3e2sA_
4

c1tj2A_
5

c3qanB_
6

d1uzba_
7

c3ed6B_
8

d1a4sa_
9

c2o2qA_
10

c2d4eB_
11

c2jg7G_
12

d1bxsa_
13

c2ve5H_
14

c3iwkB_
15

c3rh9A_
16

d1o9ja_
17

c1t90B_
18

d1ag8a_
19

d1o04a_
20

c3b4wA_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53

d2ay0a1
54

c2rbfB_
55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3hazA_



100.0 50 PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein
2c1k87A_



100.0 99 PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
3c3e2sA_



100.0 100 PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure reduced puta86-630 mutant y540s complexed with l-2 proline
4c1tj2A_



100.0 100 PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional puta protein;
PDBTitle: crystal structure of e. coli puta proline dehydrogenase domain2 (residues 86-669) complexed with acetate
5c3qanB_



100.0 35 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1;
PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans
6d1uzba_



100.0 37 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
7c3ed6B_



100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus
8d1a4sa_



100.0 25 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
9c2o2qA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp
10c2d4eB_



100.0 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde
PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8
11c2jg7G_



100.0 26 PDB header:oxidoreductase
Chain: G: PDB Molecule:antiquitin;
PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity
12d1bxsa_



100.0 30 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
13c2ve5H_



100.0 28 PDB header:oxidoreductase
Chain: H: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa
14c3iwkB_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:aminoaldehyde dehydrogenase;
PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1)
15c3rh9A_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+));
PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei
16d1o9ja_



100.0 29 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
17c1t90B_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable methylmalonate-semialdehyde
PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis
18d1ag8a_



100.0 28 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
19d1o04a_



100.0 28 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
20c3b4wA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+
21c3ifgH_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+);
PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2
22c3ek1C_



not modelled 100.0 29 PDB header:oxidoreductase
Chain: C: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308
23d1wnda_



not modelled 100.0 33 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
24c3k2wD_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase;
PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c
25d1ky8a_



not modelled 100.0 29 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
26c3i44A_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution
27d1euha_



not modelled 100.0 29 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
28c2vroB_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400
29d1tj1a2



not modelled 100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Proline dehydrohenase domain of bifunctional PutA protein
30c3r31A_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens
31c3prlD_



not modelled 100.0 28 PDB header:oxidoreductase
Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125
32c2w8qA_



not modelled 100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase,
PDBTitle: the crystal structure of human ssadh in complex with ssa.
33c2hg2A_



not modelled 100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase a;
PDBTitle: structure of lactaldehyde dehydrogenase
34c3jz4C_



not modelled 100.0 30 PDB header:oxidoreductase
Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+];
PDBTitle: crystal structure of e. coli nadp dependent enzyme
35c3ju8B_



not modelled 100.0 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase;
PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa.
36c3rosA_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase;
PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus
37c3efvC_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad
38c3pqaA_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:lactaldehyde dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661
39c3r64A_



not modelled 100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase;
PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum
40d1ez0a_



not modelled 100.0 22 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
41d1bi9a_



not modelled 100.0 31 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
42c3v4cB_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+);
PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021
43d1ad3a_



not modelled 100.0 23 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
44c3lnsD_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:benzaldehyde dehydrogenase;
PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct
45c3k9dD_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e
46d1o20a_



not modelled 100.0 17 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
47c3my7A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase;
PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a
48d1vlua_



not modelled 100.0 18 Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
49c2ekgB_



not modelled 100.0 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate
PDBTitle: structure of thermus thermophilus proline dehydrogenase inactivated by2 n-propargylglycine
50c2h5gA_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase;
PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase
51c1vluB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase;
PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution
52d1tj1a1



not modelled 100.0 100 Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
53d2ay0a1



99.7 98 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
54c2rbfB_



99.5 100 PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
55d1tz9a_



not modelled 92.0 22 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
56c3bdkB_



not modelled 84.9 15 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
57c3cnyA_



not modelled 64.9 8 PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
58d1eucb1



not modelled 61.4 24 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
59d1k75a_



not modelled 59.6 17 Fold:ALDH-like
Superfamily:ALDH-like
Family:L-histidinol dehydrogenase HisD
60c3k2gA_



not modelled 56.9 14 PDB header:resiniferatoxin binding protein
Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase-
PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides
61c2ixaA_



not modelled 54.3 26 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
62d2nu7a1



not modelled 54.0 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
63c1v9nA_



not modelled 49.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3
64c2g8yB_



not modelled 48.6 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:malate/l-lactate dehydrogenases;
PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli.
65c1vbiA_



not modelled 46.6 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
66d1xrha_



not modelled 45.5 22 Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
67c2yvqA_



not modelled 44.8 22 PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase;
PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
68d1bh9b_



not modelled 40.1 27 Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
69d1i60a_



not modelled 38.4 9 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
70d1rfma_



not modelled 38.3 17 Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
71c3dx5A_



not modelled 37.2 13 PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
72c3uoeB_



not modelled 37.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
73d1nxua_



not modelled 36.6 20 Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
74c3i0pA_



not modelled 36.5 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica
75c1wtjB_



not modelled 35.5 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:ureidoglycolate dehydrogenase;
PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato
76d1hn0a1



not modelled 34.5 16 Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Hyaluronate lyase-like catalytic, N-terminal domain
77c3pe3D_



not modelled 34.4 22 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
78c3gkuB_



not modelled 33.0 14 PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
79d2nu7b1



not modelled 32.5 22 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
80d2g0wa1



not modelled 31.6 13 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
81c2vsnB_



not modelled 31.1 22 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
82c3kwsB_



not modelled 30.2 15 PDB header:isomerase
Chain: B: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution
83d1s7ia_



not modelled 28.9 12 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
84c3oqbF_



not modelled 28.9 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
85c3cinA_



not modelled 28.9 21 PDB header:isomerase
Chain: A: PDB Molecule:myo-inositol-1-phosphate synthase-related protein;
PDBTitle: crystal structure of a myo-inositol-1-phosphate synthase-related2 protein (tm_1419) from thermotoga maritima msb8 at 1.70 a resolution
86d1sd4a_



not modelled 27.3 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
87d1a9xa2



not modelled 27.3 15 Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
88d1r30a_



not modelled 26.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
89c1r30A_



not modelled 26.6 17 PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme
90c1z2iA_



not modelled 26.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of agrobacterium tumefaciens malate2 dehydrogenase, new york structural genomics consortium
91d2pb1a1



not modelled 25.4 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
92d1xima_



not modelled 25.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
93c1eucB_



not modelled 24.0 22 PDB header:ligase
Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain;
PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase
94d2vgna3



not modelled 23.6 9 Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
95d2aaaa2



not modelled 23.5 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
96c2hk1D_



not modelled 22.8 10 PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
97d1oi7a1



not modelled 21.3 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
98d1y5ea1



not modelled 20.4 19 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
99d1bofa2



not modelled 20.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100d1wu2a3



not modelled 20.3 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0