Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	K	K	L	M	E	H	I	S	I	I	P	D	Y	R	Q	A	W	K	V	E	H	K	L	S	D	I	L	L	L	T	I	C	A	V	I	S	G	A	E	G	W	E	D	I	E	D	F	G	E	T	H	P	D	F	L	K	Q
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	D	F	E	N	G	I	P	V	H	D	T	I	A	R	V	V	S	C	I	C	P	A	K	F	H	E	S	F	I	N	W	M	L	D	Y	H	S	S	D	D	K	D	V	I	A	I	D	G	K	I	H	R	H	S	Y	D	K	S
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	R	K	G	A	I	H	V	I	S	A	F	S	T	M	H	S	L	V	I	G	Q	I	K	T	D	K	K	S	N	E	I	T	A	I	P	E	L	L	N	M	L	D	I	K	G	K	I	I	K	T	D	A	M	G	C	Q	K	D	I
Secondary structure
SS confidence
Disorder		?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	K	I	Q	K	Q	G	G	D	Y	L	F	A	V	K	G	N	Q	G	R	L	N	K	A	F	E	E	K	F	P	L	K	E	L	N	N	P	K	H	D	S	Y	A	I	S	E	K	S	H	G	R	E	E	T	R	L	H	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence		C	D	V	P	D	E	L	I	D	F	T	F	E
Secondary structure
SS confidence
Disorder								?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2v9v chain A domain 2 Region: 42 - 110 Aligned: 69 Modelled: 69 Confidence: 82.8% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 2v9v chain A Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 67.9% Identity: 9% PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) Phyre2 PDB 1mus chain A Region: 75 - 198 Aligned: 124 Modelled: 124 Confidence: 65.8% Identity: 10% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1b7e chain A Region: 126 - 198 Aligned: 73 Modelled: 73 Confidence: 59.1% Identity: 10% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 6pax chain A Region: 45 - 81 Aligned: 37 Modelled: 37 Confidence: 57.1% Identity: 24% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 3hef chain B Region: 30 - 92 Aligned: 46 Modelled: 48 Confidence: 49.7% Identity: 22% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit Phyre2 PDB 2ezh chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 47.6% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 2ezi chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 46.6% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 1pdn chain C Region: 50 - 78 Aligned: 29 Modelled: 29 Confidence: 24.6% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 1mpg chain A domain 1 Region: 42 - 93 Aligned: 50 Modelled: 52 Confidence: 23.1% Identity: 12% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: DNA repair glycosylase, 2 C-terminal domains Phyre2 PDB 2ply chain B Region: 44 - 108 Aligned: 65 Modelled: 65 Confidence: 21.9% Identity: 8% PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Phyre2 PDB 2pfs chain A Region: 105 - 193 Aligned: 89 Modelled: 89 Confidence: 21.3% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 3r1i chain B Region: 158 - 208 Aligned: 50 Modelled: 51 Confidence: 20.6% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum Phyre2 PDB 3ctm chain H Region: 156 - 207 Aligned: 51 Modelled: 52 Confidence: 16.4% Identity: 20% PDB header:oxidoreductase Chain: H: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity Phyre2 PDB 1osn chain A Region: 23 - 92 Aligned: 69 Modelled: 70 Confidence: 15.6% Identity: 12% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 3emk chain A Region: 161 - 209 Aligned: 48 Modelled: 49 Confidence: 15.5% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis Phyre2 PDB 1ajz chain A Region: 151 - 209 Aligned: 57 Modelled: 59 Confidence: 15.5% Identity: 12% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Dihydropteroate synthetase Phyre2 PDB 3ak4 chain C Region: 160 - 208 Aligned: 48 Modelled: 49 Confidence: 14.9% Identity: 19% PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase; PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens Phyre2 PDB 2kvc chain A Region: 47 - 74 Aligned: 26 Modelled: 28 Confidence: 14.1% Identity: 23% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a Phyre2 PDB 3pk0 chain B Region: 160 - 209 Aligned: 49 Modelled: 50 Confidence: 14.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis Phyre2 1 d2v9va2 2 c2v9vA_ 3 d1musa_ 4 d1b7ea_ 5 c6paxA_ 6 c3hefB_ 7 d2ezha_ 8 d2ezia_ 9 d1pdnc_ 10 d1mpga1 11 c2plyB_ 12 c2pfsA_ 13 c3r1iB_ 14 c3ctmH_ 15 d1osna_ 16 c3emkA_ 17 d1ajza_ 18 c3ak4C_ 19 c2kvcA_ 20 c3pk0B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2v9va2 82.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 2 c2v9vA_ 67.9 9 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 3 d1musa_ 65.8 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 4 d1b7ea_ 59.1 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 5 c6paxA_ 57.1 24 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 6 c3hefB_ 49.7 22 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 7 d2ezha_ 47.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 8 d2ezia_ 46.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 9 d1pdnc_ 24.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 10 d1mpga1 23.1 12 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 11 c2plyB_ 21.9 8 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 12 c2pfsA_ 21.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 13 c3r1iB_ 20.6 22 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum 14 c3ctmH_ 16.4 20 PDB header:oxidoreductase Chain: H: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity 15 d1osna_ 15.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 16 c3emkA_ 15.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 17 d1ajza_ 15.5 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 18 c3ak4C_ 14.9 19 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase; PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens 19 c2kvcA_ 14.1 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 20 c3pk0B_ 14.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis 21 c2vp8A_ not modelled 13.4 21 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 22 d1cyda_ not modelled 13.4 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 23 d3bpya1 not modelled 12.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 24 c2y5sA_ not modelled 11.5 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 25 d6paxa2 not modelled 11.4 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 26 d1dlwa_ not modelled 11.3 9 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 27 c2z1nA_ not modelled 11.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of ape0912 from aeropyrum pernix k1 28 c3gk0H_ not modelled 11.1 24 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 29 c2vdaA_ not modelled 10.9 13 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 30 c2rfpA_ not modelled 10.9 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 31 d1rh6a_ not modelled 10.8 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 32 c3ol4B_ not modelled 10.6 22 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 33 d1k78a2 not modelled 10.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 34 c2k27A_ not modelled 10.0 23 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 35 c3co7C_ not modelled 9.8 14 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 36 d1iyxa1 not modelled 9.8 22 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 37 d3orca_ not modelled 9.7 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 38 d1bdba_ not modelled 9.5 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 39 c2kzvA_ not modelled 9.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 40 c3mx7A_ not modelled 9.1 29 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 41 d1pm6a_ not modelled 9.0 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 42 d2o23a1 not modelled 8.9 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 43 c2o2sA_ not modelled 8.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan 44 c3fmtF_ not modelled 8.7 13 PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna 45 d1ae1a_ not modelled 8.7 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 46 d1m5wa_ not modelled 8.4 28 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 47 c3aq8A_ not modelled 8.4 4 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 48 c3gafF_ not modelled 8.4 15 PDB header:oxidoreductase Chain: F: PDB Molecule:7-alpha-hydroxysteroid dehydrogenase; PDBTitle: 2.2a crystal structure of 7-alpha-hydroxysteroid2 dehydrogenase from brucella melitensis 49 c3gdfA_ not modelled 8.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase; PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum. 50 c3l1pA_ not modelled 8.2 20 PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1; PDBTitle: pou protein:dna complex 51 c3rihB_ not modelled 7.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:short chain dehydrogenase or reductase; PDBTitle: crystal structure of a putative short chain dehydrogenase or reductase2 from mycobacterium abscessus 52 c1e17A_ not modelled 7.7 9 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 53 c2wdzD_ not modelled 7.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 54 c3rkrC_ not modelled 7.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:short chain oxidoreductase; PDBTitle: crystal structure of a metagenomic short-chain oxidoreductase (sdr) in2 complex with nadp 55 d1h5qa_ not modelled 7.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 56 d1d7oa_ not modelled 7.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 57 c2ixsB_ not modelled 7.0 11 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 58 d1s69a_ not modelled 6.9 21 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 59 d1xi8a3 not modelled 6.8 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 60 d1vl8a_ not modelled 6.7 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 61 d1vi7a1 not modelled 6.6 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 62 c3afnC_ not modelled 6.6 17 PDB header:oxidoreductase Chain: C: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of aldose reductase a1-r complexed with nadp 63 d1xb4a2 not modelled 6.6 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 64 c3k6qB_ not modelled 6.6 14 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 65 d1idra_ not modelled 6.5 7 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 66 d1g31a_ not modelled 6.5 20 Fold:GroES-like Superfamily:GroES-like Family:GroES 67 c3iccA_ not modelled 6.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 3-oxoacyl-(acyl carrier protein) reductase; PDBTitle: crystal structure of a putative 3-oxoacyl-(acyl carrier protein)2 reductase from bacillus anthracis at 1.87 a resolution 68 d2c6ya1 not modelled 6.4 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 69 c3cxtA_ not modelled 6.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase with different specificities; PDBTitle: quaternary complex structure of gluconate 5-dehydrogenase from2 streptococcus suis type 2 70 c1qcrD_ not modelled 6.3 8 PDB header: PDB COMPND: 71 d1fmca_ not modelled 6.2 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 72 c3rf7A_ not modelled 6.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 73 d1d1la_ not modelled 6.1 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 74 c3ksuA_ not modelled 6.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:3-oxoacyl-acyl carrier protein reductase; PDBTitle: crystal structure of short-chain dehydrogenase from2 oenococcus oeni psu-1 75 c3f9iB_ not modelled 6.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] reductase; PDBTitle: crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase2 rickettsia prowazekii 76 d1ejxa_ not modelled 5.9 13 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 77 c3hluA_ not modelled 5.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 78 d4croa_ not modelled 5.6 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 79 d2giab1 not modelled 5.5 50 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 80 c2giaB_ not modelled 5.5 50 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 81 c1iszA_ not modelled 5.5 5 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase; PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose 82 d1un2a_ not modelled 5.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 83 d2i7pa1 not modelled 5.5 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 84 c1vi2B_ not modelled 5.5 16 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad 85 c2kl8A_ not modelled 5.4 8 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 86 c2pijB_ not modelled 5.4 16 PDB header:transcription Chain: B: PDB Molecule:prophage pfl 6 cro; PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5 87 c2b4qB_ not modelled 5.4 11 PDB header:oxidoreductase Chain: B: PDB Molecule:rhamnolipids biosynthesis 3-oxoacyl-[acyl- PDBTitle: pseudomonas aeruginosa rhlg/nadp active-site complex 88 d1sbya1 not modelled 5.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 89 d2cvea1 not modelled 5.4 16 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 90 d2abka_ not modelled 5.3 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 91 d1w6ta1 not modelled 5.3 23 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 92 c3cwbQ_ not modelled 5.2 8 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 93 d1ja9a_ not modelled 5.2 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 94 d1xsea_ not modelled 5.2 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 95 d4ubpa_ not modelled 5.1 12 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 96 d2ptza1 not modelled 5.1 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 97 c1yb1B_ not modelled 5.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:17-beta-hydroxysteroid dehydrogenase type xi; PDBTitle: crystal structure of human 17-beta-hydroxysteroid dehydrogenase type2 xi 98 d1q7ba_ not modelled 5.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0