Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52614
DateThu Jan 5 12:05:53 GMT 2012
Unique Job IDf3409daa45c254e5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2rrlA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
Confidence and coverage
Confidence: 99.9% Coverage: 45%
167 residues ( 45% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 79% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK
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Disorder  ??????????????????????????







??????????????????????????
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   .........70.........80.........90.........100.........110.........120
Sequence  GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA
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Disorder  ????????????????????????????????????????????????????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAP
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Disorder  ????????????????????????????????????????????????????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW
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Disorder  ??????????????????????????????????????????????????????????

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   .........250.........260.........270.........280.........290.........300
Sequence  QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA
Secondary structure 













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Disorder 









?
????











































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   .........310.........320.........330.........340.........350.........360
Sequence  LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS
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Disorder 









????
??


????????????????????????????????????????
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   .........370.....
Sequence  LQGRVTGNSGVDIFA
Secondary structure 











SS confidence 














Disorder  ???????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2rrl chain A

3D model

Region: 173 - 339
Aligned: 167
Modelled: 167
Confidence: 99.9%
Identity: 59%
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik

Phyre2

PDB 1k28 chain A domain 1

3D model

Region: 256 - 275
Aligned: 20
Modelled: 20
Confidence: 46.0%
Identity: 30%
Fold: OB-fold
Superfamily: gp5 N-terminal domain-like
Family: gp4 N-terminal domain-like

Phyre2

PDB 1byn chain A

3D model

Region: 266 - 287
Aligned: 22
Modelled: 22
Confidence: 35.7%
Identity: 36%
Fold: C2 domain-like
Superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
Family: Synaptotagmin-like (S variant)

Phyre2

PDB 2pof chain A domain 1

3D model

Region: 280 - 304
Aligned: 25
Modelled: 25
Confidence: 31.9%
Identity: 24%
Fold: HIT-like
Superfamily: HIT-like
Family: CDH-like

Phyre2

PDB 3ddc chain B

3D model

Region: 242 - 305
Aligned: 63
Modelled: 64
Confidence: 30.8%
Identity: 17%
PDB header:hydrolase/apoptosis
Chain: B: PDB Molecule:ras association domain-containing family protein 5;
PDBTitle: crystal structure of nore1a in complex with ras

Phyre2

PDB 1uv7 chain A

3D model

Region: 239 - 280
Aligned: 33
Modelled: 42
Confidence: 27.0%
Identity: 24%
PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae

Phyre2

PDB 1uv7 chain A

3D model

Region: 239 - 280
Aligned: 33
Modelled: 42
Confidence: 27.0%
Identity: 24%
Fold: RRF/tRNA synthetase additional domain-like
Superfamily: General secretion pathway protein M, EpsM
Family: General secretion pathway protein M, EpsM

Phyre2

PDB 1bco chain A domain 1

3D model

Region: 257 - 273
Aligned: 17
Modelled: 17
Confidence: 26.9%
Identity: 29%
Fold: mu transposase, C-terminal domain
Superfamily: mu transposase, C-terminal domain
Family: mu transposase, C-terminal domain

Phyre2

PDB 2e62 chain A

3D model

Region: 289 - 314
Aligned: 26
Modelled: 26
Confidence: 26.7%
Identity: 31%
PDB header:rna binding protein
Chain: A: PDB Molecule:protein at5g25060;
PDBTitle: solution structure of the cwf21 domain in protein aak25922

Phyre2

PDB 1pdl chain C

3D model

Region: 257 - 275
Aligned: 19
Modelled: 19
Confidence: 22.6%
Identity: 32%
PDB header:hydrolase
Chain: C: PDB Molecule:tail-associated lysozyme;
PDBTitle: fitting of gp5 in the cryoem reconstruction of the2 bacteriophage t4 baseplate

Phyre2

PDB 2rnr chain B domain 1

3D model

Region: 261 - 305
Aligned: 45
Modelled: 45
Confidence: 20.5%
Identity: 16%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: TFIIH domain

Phyre2

PDB 2bol chain A

3D model

Region: 254 - 285
Aligned: 32
Modelled: 32
Confidence: 19.2%
Identity: 16%
PDB header:heat shock protein
Chain: A: PDB Molecule:small heat shock protein;
PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein

Phyre2

PDB 2gy9 chain I domain 1

3D model

Region: 268 - 313
Aligned: 46
Modelled: 46
Confidence: 18.9%
Identity: 17%
Fold: Ribosomal protein S5 domain 2-like
Superfamily: Ribosomal protein S5 domain 2-like
Family: Translational machinery components

Phyre2

PDB 2vqe chain I domain 1

3D model

Region: 268 - 313
Aligned: 46
Modelled: 46
Confidence: 18.0%
Identity: 22%
Fold: Ribosomal protein S5 domain 2-like
Superfamily: Ribosomal protein S5 domain 2-like
Family: Translational machinery components

Phyre2

PDB 3q9q chain B

3D model

Region: 258 - 285
Aligned: 28
Modelled: 28
Confidence: 17.9%
Identity: 14%
PDB header:chaperone
Chain: B: PDB Molecule:heat shock protein beta-1;
PDBTitle: hspb1 fragment second crystal form

Phyre2

PDB 2enp chain A

3D model

Region: 265 - 287
Aligned: 23
Modelled: 23
Confidence: 17.2%
Identity: 22%
PDB header:transport protein
Chain: A: PDB Molecule:b/k protein;
PDBTitle: solution structure of the first c2 domain from human b/k2 protein

Phyre2

PDB 2hiy chain A domain 1

3D model

Region: 301 - 324
Aligned: 24
Modelled: 23
Confidence: 16.2%
Identity: 25%
Fold: SP0830-like
Superfamily: SP0830-like
Family: SP0830-like

Phyre2

PDB 2r83 chain A domain 1

3D model

Region: 266 - 287
Aligned: 22
Modelled: 22
Confidence: 14.9%
Identity: 18%
Fold: C2 domain-like
Superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
Family: Synaptotagmin-like (S variant)

Phyre2

PDB 2ns5 chain A

3D model

Region: 270 - 307
Aligned: 38
Modelled: 38
Confidence: 14.3%
Identity: 11%
PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization

Phyre2

PDB 3hug chain A

3D model

Region: 291 - 314
Aligned: 24
Modelled: 24
Confidence: 14.0%
Identity: 33%
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl

Phyre2
1

c2rrlA_
2

d1k28a1
3

d1byna_
4

d2pofa1
5

c3ddcB_
6

c1uv7A_
7

d1uv7a_
8

d1bcoa1
9

c2e62A_
10

c1pdlC_
11

d2rnrb1
12

c2bolA_
13

d2gy9i1
14

d2vqei1
15

c3q9qB_
16

c2enpA_
17

d2hiya1
18

d2r83a1
19

c2ns5A_
20

c3hugA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rrlA_



99.9 59 PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
2d1k28a1



46.0 30 Fold:OB-fold
Superfamily:gp5 N-terminal domain-like
Family:gp4 N-terminal domain-like
3d1byna_



35.7 36 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
4d2pofa1



31.9 24 Fold:HIT-like
Superfamily:HIT-like
Family:CDH-like
5c3ddcB_



30.8 17 PDB header:hydrolase/apoptosis
Chain: B: PDB Molecule:ras association domain-containing family protein 5;
PDBTitle: crystal structure of nore1a in complex with ras
6c1uv7A_



27.0 24 PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae
7d1uv7a_



27.0 24 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:General secretion pathway protein M, EpsM
Family:General secretion pathway protein M, EpsM
8d1bcoa1



26.9 29 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
9c2e62A_



26.7 31 PDB header:rna binding protein
Chain: A: PDB Molecule:protein at5g25060;
PDBTitle: solution structure of the cwf21 domain in protein aak25922
10c1pdlC_



22.6 32 PDB header:hydrolase
Chain: C: PDB Molecule:tail-associated lysozyme;
PDBTitle: fitting of gp5 in the cryoem reconstruction of the2 bacteriophage t4 baseplate
11d2rnrb1



20.5 16 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:TFIIH domain
12c2bolA_



19.2 16 PDB header:heat shock protein
Chain: A: PDB Molecule:small heat shock protein;
PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein
13d2gy9i1



18.9 17 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
14d2vqei1



18.0 22 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
15c3q9qB_



17.9 14 PDB header:chaperone
Chain: B: PDB Molecule:heat shock protein beta-1;
PDBTitle: hspb1 fragment second crystal form
16c2enpA_



17.2 22 PDB header:transport protein
Chain: A: PDB Molecule:b/k protein;
PDBTitle: solution structure of the first c2 domain from human b/k2 protein
17d2hiya1



16.2 25 Fold:SP0830-like
Superfamily:SP0830-like
Family:SP0830-like
18d2r83a1



14.9 18 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
19c2ns5A_



14.3 11 PDB header:signaling protein
Chain: A: PDB Molecule:partitioning-defective 3 homolog;
PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization
20c3hugA_



14.0 33 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
21c1qysA_



not modelled 13.6 14 PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
22c2d8kA_



not modelled 13.6 18 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:synaptotagmin vii;
PDBTitle: solution structure of the first c2 domain of synaptotagmin2 vii
23d1xuva_



not modelled 13.4 5 Fold:TBP-like
Superfamily:Bet v1-like
Family:AHSA1 domain
24c2nnzA_



not modelled 12.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus
25d2p5ka1



not modelled 12.5 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
26c2b3rA_



not modelled 12.5 19 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4-phosphate 3-kinase c2 domain-
PDBTitle: crystal structure of the c2 domain of class ii phosphatidylinositide2 3-kinase c2
27d1u0ua2



not modelled 12.3 16 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
28d1cfza_



not modelled 12.1 36 Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Hydrogenase maturating endopeptidase HybD
29d1zx8a1



not modelled 12.0 17 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:TM1367-like
30d1uowa_



not modelled 12.0 18 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
31d2cfxa1



not modelled 11.7 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
32d3b7sa2



not modelled 11.5 6 Fold:Leukotriene A4 hydrolase N-terminal domain
Superfamily:Leukotriene A4 hydrolase N-terminal domain
Family:Leukotriene A4 hydrolase N-terminal domain
33d1dsya_



not modelled 11.4 16 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
34d1go3e2



not modelled 11.3 18 Fold:Dodecin subunit-like
Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE)
Family:N-terminal, heterodimerisation domain of RBP7 (RpoE)
35d1u0ma2



not modelled 11.2 20 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
36d2cg4a1



not modelled 11.1 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
37d1b4aa1



not modelled 11.0 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
38d2j0wa3



not modelled 11.0 9 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
39d2j07a2



not modelled 10.7 27 Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
40d1cc1l_



not modelled 10.7 26 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
41d1f9na1



not modelled 10.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
42c2jvfA_



not modelled 10.5 29 PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
43c2nscA_



not modelled 10.5 17 PDB header:chaperone
Chain: A: PDB Molecule:trigger factor;
PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima
44d2c35b2



not modelled 10.3 45 Fold:Dodecin subunit-like
Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE)
Family:N-terminal, heterodimerisation domain of RBP7 (RpoE)
45d1wuil1



not modelled 10.3 19 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
46d1rh8a_



not modelled 10.3 23 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
47d1dqva2



not modelled 10.3 26 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
48d1rsya_



not modelled 10.2 35 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
49c2jqzA_



not modelled 10.2 31 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2;
PDBTitle: solution structure of the c2 domain of human smurf2
50d1i1ga1



not modelled 10.1 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
51c1b4aA_



not modelled 10.0 32 PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
52d2vv5a2



not modelled 9.9 11 Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
53d1txka1



not modelled 9.8 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
54d1imua_



not modelled 9.7 10 Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
55c3ereD_



not modelled 9.6 37 PDB header:dna binding protein/dna
Chain: D: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
56c2dmgA_



not modelled 9.5 18 PDB header:lipid binding protein
Chain: A: PDB Molecule:kiaa1228 protein;
PDBTitle: solution structure of the third c2 domain of kiaa12282 protein
57c3bbnI_



not modelled 9.5 17 PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein s9;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
58d1y14b2



not modelled 9.4 36 Fold:Dodecin subunit-like
Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE)
Family:N-terminal, heterodimerisation domain of RBP7 (RpoE)
59c2q3xA_



not modelled 9.3 20 PDB header:transport protein
Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein 1;
PDBTitle: the rim1alpha c2b domain
60d2cu6a1



not modelled 8.9 16 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
61c2chdA_



not modelled 8.9 35 PDB header:protein transport
Chain: A: PDB Molecule:rabphilin-3a;
PDBTitle: crystal structure of the c2a domain of rabphilin-3a
62d1pa4a_



not modelled 8.9 15 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
63c3k12F_



not modelled 8.9 19 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:uncharacterized protein a6v7t0;
PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa
64d2cyya1



not modelled 8.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
65d2oo3a1



not modelled 8.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:LPG1296-like
66d1a25a_



not modelled 8.5 14 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
67c2kyzA_



not modelled 8.4 17 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
68c3tqmD_



not modelled 8.3 13 PDB header:protein binding
Chain: D: PDB Molecule:ribosome-associated factor y;
PDBTitle: structure of an ribosomal subunit interface protein from coxiella2 burnetii
69d1oiza1



not modelled 8.1 25 Fold:RuvA C-terminal domain-like
Superfamily:CRAL/TRIO N-terminal domain
Family:CRAL/TRIO N-terminal domain
70c3gtzA_



not modelled 8.1 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative translation initiation inhibitor;
PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium
71d1dqva1



not modelled 8.1 14 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
72d1k0ra4



not modelled 8.0 25 Fold:Transcription factor NusA, N-terminal domain
Superfamily:Transcription factor NusA, N-terminal domain
Family:Transcription factor NusA, N-terminal domain
73c2dvzA_



not modelled 7.9 7 PDB header:transport protein
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: structure of a periplasmic transporter
74d1u0bb1



not modelled 7.8 38 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
75d2qqsa2



not modelled 7.8 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
76d1bi5a2



not modelled 7.6 13 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
77d1f46a_



not modelled 7.5 26 Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
78c2ds4A_



not modelled 7.5 7 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
79c3d01G_



not modelled 7.4 7 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens
80d1fe0a_



not modelled 7.4 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
81d1e3db_



not modelled 7.4 18 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
82d1bkna2



not modelled 7.3 6 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
83d1lb2b_



not modelled 7.3 32 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
84d1aoya_



not modelled 7.2 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
85d1ugka_



not modelled 7.2 19 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
86c2v51E_



not modelled 7.2 29 PDB header:structural protein/contractile protein
Chain: E: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
87c2kzfA_



not modelled 7.2 20 PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome-binding factor a;
PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a
88d2qqra2



not modelled 7.2 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
89c1u0bB_



not modelled 7.1 31 PDB header:ligase/rna
Chain: B: PDB Molecule:cysteinyl trna;
PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys
90d1g0da2



not modelled 7.0 9 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
91d1dnpa2



not modelled 7.0 41 Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
92c2klrA_



not modelled 6.9 12 PDB header:chaperone
Chain: A: PDB Molecule:alpha-crystallin b chain;
PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers
93c3lybC_



not modelled 6.9 21 PDB header:hydrolase
Chain: C: PDB Molecule:putative endoribonuclease;
PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae
94c2v51F_



not modelled 6.9 44 PDB header:structural protein/contractile protein
Chain: F: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
95c2e85B_



not modelled 6.9 21 PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
96d1wlha1



not modelled 6.8 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
97c2gjhA_



not modelled 6.8 21 PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
98c2r83B_



not modelled 6.7 36 PDB header:endocytosis, exocytosis
Chain: B: PDB Molecule:synaptotagmin-1;
PDBTitle: crystal structure analysis of human synaptotagmin 1 c2a-c2b
99d2ns9a1



not modelled 6.7 9 Fold:TBP-like
Superfamily:Bet v1-like
Family:CoxG-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0