Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	A	E	L	F	T	N	N	A	L	N	L	V	I	I	F	G	S	C	A	A	L	I	L	M	S	F	W	F	R	R	G	N	R	K	R	K	G	F	L	F	H	A	V	Q	F	L	I	Y	T	I	I	I	S	A	V	G	S	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																									?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	N	Y	V	I	E	N	Y	K	L	K	F	I	T	P	G	V	I	D	F	I	C	T	S	L	I	A	V	I	L	T	I	K	L	F	L	L	I	N	Q	F	E	K	Q	Q	I	K	K	G	R	D	I	T	S	A	R	I	M	S	R
Secondary structure
SS confidence
Disorder											?																																					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	I	K	I	T	I	I	V	V	L	V	L	L	Y	G	E	H	F	G	M	S	L	S	G	L	L	T	F	G	G	I	G	G	L	A	V	G	M	A	G	K	D	I	L	S	N	F	F	S	G	I	M	L	Y	F	D	R	P	F	S
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	G	D	W	I	R	S	P	D	R	N	I	E	G	T	V	A	E	I	G	W	R	I	T	K	I	T	T	F	D	N	R	P	L	Y	V	P	N	S	L	F	S	S	I	S	V	E	N	P	G	R	M	T	N	R	R	I	T	T	T
Secondary structure
SS confidence
Disorder																																										?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	G	L	R	Y	E	D	A	A	K	V	G	V	I	V	E	A	V	R	E	M	L	K	N	H	P	A	I	D	Q	R	Q	T	L	L	V	Y	F	N	Q	F	A	D	S	S	L	N	I	M	V	Y	C	F	T	K	T	T	V	W	A
Secondary structure
SS confidence
Disorder																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Sequence		E	W	L	A	A	Q	Q	D	V	Y	L	K	I	I	D	I	V	Q	S	H	G	A	D	F	A	F	P	S	Q	T	L	Y	M	D	N	I	T	P	P	E	Q	G	R
Secondary structure
SS confidence
Disorder																																			?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vv5 chain D Region: 76 - 335 Aligned: 253 Modelled: 258 Confidence: 100.0% Identity: 22% PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Phyre2 PDB 2vv5 chain A domain 2 Region: 231 - 335 Aligned: 100 Modelled: 105 Confidence: 99.7% Identity: 20% Fold: Ferredoxin-like Superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain Family: Mechanosensitive channel protein MscS (YggB), C-terminal domain Phyre2 PDB 2vv5 chain A domain 1 Region: 163 - 230 Aligned: 66 Modelled: 68 Confidence: 99.7% Identity: 27% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Mechanosensitive channel protein MscS (YggB), middle domain Phyre2 PDB 2vv5 chain A domain 3 Region: 80 - 161 Aligned: 82 Modelled: 82 Confidence: 98.9% Identity: 21% Fold: Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region Family: Mechanosensitive channel protein MscS (YggB), transmembrane region Phyre2 PDB 2hqh chain A domain 1 Region: 178 - 200 Aligned: 23 Modelled: 23 Confidence: 77.2% Identity: 30% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 1npp chain A domain 2 Region: 178 - 200 Aligned: 23 Modelled: 23 Confidence: 74.7% Identity: 39% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1nz9 chain A Region: 178 - 216 Aligned: 39 Modelled: 39 Confidence: 74.5% Identity: 31% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2e6z chain A Region: 176 - 221 Aligned: 46 Modelled: 46 Confidence: 73.3% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 2kvq chain G Region: 178 - 216 Aligned: 39 Modelled: 39 Confidence: 71.4% Identity: 26% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 178 - 216 Aligned: 39 Modelled: 39 Confidence: 71.4% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2zkr chain T Region: 178 - 217 Aligned: 40 Modelled: 40 Confidence: 61.5% Identity: 15% PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2coy chain A domain 1 Region: 176 - 200 Aligned: 25 Modelled: 25 Confidence: 57.1% Identity: 32% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 3p8b chain B Region: 178 - 200 Aligned: 23 Modelled: 23 Confidence: 52.7% Identity: 17% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 3cnr chain A Region: 169 - 263 Aligned: 68 Modelled: 69 Confidence: 52.3% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri Phyre2 PDB 1whk chain A Region: 176 - 200 Aligned: 25 Modelled: 25 Confidence: 50.7% Identity: 20% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 2cqa chain A domain 1 Region: 179 - 200 Aligned: 20 Modelled: 22 Confidence: 50.4% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: TIP49 domain Phyre2 PDB 2eyq chain A domain 1 Region: 172 - 221 Aligned: 49 Modelled: 50 Confidence: 48.1% Identity: 22% Fold: SH3-like barrel Superfamily: CarD-like Family: CarD-like Phyre2 PDB 2gvh chain A domain 1 Region: 173 - 207 Aligned: 30 Modelled: 35 Confidence: 47.4% Identity: 20% Fold: Thioesterase/thiol ester dehydrase-isomerase Superfamily: Thioesterase/thiol ester dehydrase-isomerase Family: 4HBT-like Phyre2 PDB 1y7u chain A domain 1 Region: 173 - 207 Aligned: 30 Modelled: 35 Confidence: 45.1% Identity: 20% Fold: Thioesterase/thiol ester dehydrase-isomerase Superfamily: Thioesterase/thiol ester dehydrase-isomerase Family: 4HBT-like Phyre2 PDB 1whm chain A Region: 176 - 200 Aligned: 25 Modelled: 25 Confidence: 44.7% Identity: 20% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 1 c2vv5D_ 2 d2vv5a2 3 d2vv5a1 4 d2vv5a3 5 d2hqha1 6 d1nppa2 7 d1nz9a_ 8 c2e6zA_ 9 c2kvqG_ 10 c2jvvA_ 11 c2zkrt_ 12 d2coya1 13 c3p8bB_ 14 c3cnrA_ 15 d1whka_ 16 d2cqaa1 17 d2eyqa1 18 d2gvha1 19 d1y7ua1 20 d1whma_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 22 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a2 99.7 20 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 3 d2vv5a1 99.7 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 4 d2vv5a3 98.9 21 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d2hqha1 77.2 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 6 d1nppa2 74.7 39 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 7 d1nz9a_ 74.5 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 8 c2e6zA_ 73.3 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 9 c2kvqG_ 71.4 26 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 10 c2jvvA_ 71.4 26 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 c2zkrt_ 61.5 15 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 d2coya1 57.1 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 13 c3p8bB_ 52.7 17 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 14 c3cnrA_ 52.3 15 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 15 d1whka_ 50.7 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 16 d2cqaa1 50.4 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 17 d2eyqa1 48.1 22 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 18 d2gvha1 47.4 20 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 19 d1y7ua1 45.1 20 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 20 d1whma_ 44.7 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 21 c2gvhC_ not modelled 44.5 23 PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution 22 c4a1cS_ not modelled 43.7 18 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 23 c1dvpA_ not modelled 39.7 17 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 24 d1vqot1 not modelled 38.8 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 25 d1u0la1 not modelled 38.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d1vpma_ not modelled 37.5 23 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 27 c1m1gB_ not modelled 36.7 39 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 d2cp6a1 not modelled 36.3 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 29 d2g50a1 not modelled 35.6 14 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 30 c3b7kA_ not modelled 35.4 17 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coenzyme a thioesterase 12; PDBTitle: human acyl-coenzyme a thioesterase 12 31 d2e3ia1 not modelled 35.3 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 32 c1mv3A_ not modelled 34.7 20 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc 33 c2rcnA_ not modelled 34.5 23 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 34 d1t9ha1 not modelled 34.4 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 c3iz5Y_ not modelled 33.3 23 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 36 d2cp5a1 not modelled 33.2 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 37 c2qq2C_ not modelled 32.9 20 PDB header:hydrolase Chain: C: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of c-terminal domain of human acyl-coa thioesterase2 7 38 d1e0ta1 not modelled 32.5 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 39 d2cp0a1 not modelled 32.5 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 40 d1ylia1 not modelled 31.4 30 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 41 d2coza1 not modelled 28.3 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 42 d2do3a1 not modelled 28.3 16 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 43 d2cp2a1 not modelled 28.1 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 44 d1whja_ not modelled 27.9 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 45 c2yv5A_ not modelled 27.5 16 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 46 c2e4hA_ not modelled 27.0 30 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 47 d1pkma1 not modelled 27.0 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 48 c2eisA_ not modelled 26.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tthb207; PDBTitle: x-ray structure of acyl-coa hydrolase-like protein, tt1379, from2 thermus thermophilus hb8 49 d1pkla1 not modelled 26.2 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 50 c2z0wA_ not modelled 25.5 19 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 51 d1vqoq1 not modelled 25.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 52 d2cp3a1 not modelled 24.9 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 53 d2gvha2 not modelled 24.9 23 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 54 d2e3ha1 not modelled 24.7 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 55 d2bi0a1 not modelled 24.3 22 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 56 c3d6lA_ not modelled 24.2 27 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of cj0915, a hexameric hotdog fold2 thioesterase of campylobacter jejuni 57 c2v1oF_ not modelled 23.9 7 PDB header:hydrolase Chain: F: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of n-terminal domain of acyl-coa2 thioesterase 7 58 c2dxcG_ not modelled 23.6 41 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 59 c1oy8A_ not modelled 22.8 15 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 60 d2cowa1 not modelled 22.7 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 61 d1whha_ not modelled 22.6 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 62 c2qqsB_ not modelled 22.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 63 c3mlcC_ not modelled 21.8 20 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 64 d1yeza1 not modelled 21.6 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 65 c3h0mE_ not modelled 21.3 10 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 66 c3qz9D_ not modelled 20.7 45 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 67 d1v6ga2 not modelled 20.2 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 68 c2k4kA_ not modelled 19.2 11 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 69 d1yvca1 not modelled 19.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 70 d1ppje2 not modelled 18.8 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 71 d1s04a_ not modelled 18.6 26 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 72 c2khjA_ not modelled 18.1 15 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 73 c2kcuA_ not modelled 18.1 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ctr107; PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107 74 d1a3xa1 not modelled 17.7 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 75 c3pifD_ not modelled 17.5 28 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 76 d1liua1 not modelled 17.4 32 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 77 c1u0lB_ not modelled 16.2 23 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 78 d2z0sa1 not modelled 16.2 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 d1v29b_ not modelled 15.8 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 80 c2xdpA_ not modelled 14.7 6 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 81 d2j01t1 not modelled 14.6 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 82 c1s1iU_ not modelled 14.1 18 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 83 c2xhcA_ not modelled 14.0 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 84 d1i9ga_ not modelled 13.5 42 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 85 d1bcce2 not modelled 13.0 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 86 d3bzka4 not modelled 12.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 d1sroa_ not modelled 12.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 d1oqka_ not modelled 12.5 30 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 89 d2je6i1 not modelled 12.4 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 d1xnea_ not modelled 12.4 30 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 91 c3a35B_ not modelled 12.3 10 PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin 92 c1t9hA_ not modelled 12.3 27 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 93 c3iz5U_ not modelled 12.2 17 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 d1ugpb_ not modelled 12.1 52 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 95 d2qdya1 not modelled 12.1 11 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 96 c1t0jA_ not modelled 12.0 14 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 97 d2zjrm1 not modelled 11.7 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 98 c2z0sA_ not modelled 11.6 13 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 99 d2p13a1 not modelled 11.5 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0