Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Y	S	G	E	R	D	N	F	A	P	H	M	A	L	V	P	M	V	I	E	Q	T	S	R	G	E	R	S	F	D	I	Y	S	R	L	L	K	E	R	V	I	F	L	T	G	Q	V	E	D	H	M	A	N	L	I	V	A	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	L	F	L	E	A	E	N	P	E	K	D	I	Y	L	Y	I	N	S	P	G	G	V	I	T	A	G	M	S	I	Y	D	T	M	Q	F	I	K	P	D	V	S	T	I	C	M	G	Q	A	A	S	M	G	A	F	L	L	T	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	K	G	K	R	F	C	L	P	N	S	R	V	M	I	H	Q	P	L	G	G	Y	Q	G	Q	A	T	D	I	E	I	H	A	R	E	I	L	K	V	K	G	R	M	N	E	L	M	A	L	H	T	G	Q	S	L	E	Q	I	E	R
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence		D	T	E	R	D	R	F	L	S	A	P	E	A	V	E	Y	G	L	V	D	S	I	L	T	H	R	N
Secondary structure
SS confidence
Disorder																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3q7h chain M Region: 16 - 206 Aligned: 191 Modelled: 191 Confidence: 100.0% Identity: 67% PDB header:hydrolase Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii Phyre2 PDB 1y7o chain E Region: 16 - 207 Aligned: 174 Modelled: 192 Confidence: 100.0% Identity: 52% PDB header:hydrolase Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: the structure of streptococcus pneumoniae a153p clpp Phyre2 PDB 3p2l chain D Region: 20 - 207 Aligned: 187 Modelled: 188 Confidence: 100.0% Identity: 62% PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis Phyre2 PDB 1yg6 chain A domain 1 Region: 25 - 207 Aligned: 183 Modelled: 182 Confidence: 100.0% Identity: 100% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 1y7o chain A domain 1 Region: 17 - 205 Aligned: 170 Modelled: 182 Confidence: 100.0% Identity: 52% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 1tg6 chain G Region: 30 - 207 Aligned: 178 Modelled: 178 Confidence: 100.0% Identity: 55% PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp Phyre2 PDB 1tg6 chain A domain 1 Region: 30 - 206 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 55% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 3kth chain D Region: 31 - 207 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 69% PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form Phyre2 PDB 2cby chain G Region: 32 - 204 Aligned: 163 Modelled: 173 Confidence: 100.0% Identity: 55% PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis Phyre2 PDB 2f6i chain G Region: 32 - 206 Aligned: 162 Modelled: 175 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease, putative; PDBTitle: crystal structure of the clpp protease catalytic domain from2 plasmodium falciparum Phyre2 PDB 2cby chain A domain 1 Region: 32 - 205 Aligned: 164 Modelled: 174 Confidence: 100.0% Identity: 55% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 2f6i chain A domain 1 Region: 32 - 206 Aligned: 166 Modelled: 175 Confidence: 100.0% Identity: 42% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 3bez chain C Region: 42 - 204 Aligned: 160 Modelled: 163 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals Phyre2 PDB 2deo chain A Region: 42 - 207 Aligned: 144 Modelled: 140 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii Phyre2 PDB 2ej5 chain B Region: 42 - 207 Aligned: 147 Modelled: 149 Confidence: 99.3% Identity: 17% PDB header:lyase Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii; PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus Phyre2 PDB 2fw2 chain A domain 1 Region: 41 - 207 Aligned: 147 Modelled: 150 Confidence: 99.2% Identity: 16% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Crotonase-like Phyre2 PDB 3fdu chain F Region: 42 - 205 Aligned: 145 Modelled: 147 Confidence: 99.2% Identity: 12% PDB header:isomerase Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii Phyre2 PDB 3kqf chain C Region: 42 - 205 Aligned: 145 Modelled: 147 Confidence: 99.2% Identity: 19% PDB header:isomerase Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: 1.8 angstrom resolution crystal structure of enoyl-coa hydratase from2 bacillus anthracis. Phyre2 PDB 3pea chain D Region: 49 - 205 Aligned: 138 Modelled: 139 Confidence: 99.2% Identity: 14% PDB header:isomerase Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of enoyl-coa hydratase from bacillus anthracis str.2 'ames ancestor' Phyre2 PDB 1hzd chain A Region: 49 - 207 Aligned: 140 Modelled: 142 Confidence: 99.2% Identity: 14% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Crotonase-like Phyre2 1 c3q7hM_ 2 c1y7oE_ 3 c3p2lD_ 4 d1yg6a1 5 d1y7oa1 6 c1tg6G_ 7 d1tg6a1 8 c3kthD_ 9 c2cbyG_ 10 c2f6iG_ 11 d2cbya1 12 d2f6ia1 13 c3bezC_ 14 c2deoA_ 15 c2ej5B_ 16 d2fw2a1 17 c3fduF_ 18 c3kqfC_ 19 c3peaD_ 20 d1hzda_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3q7hM_ 100.0 67 PDB header:hydrolase Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii 2 c1y7oE_ 100.0 52 PDB header:hydrolase Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: the structure of streptococcus pneumoniae a153p clpp 3 c3p2lD_ 100.0 62 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis 4 d1yg6a1 100.0 100 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 5 d1y7oa1 100.0 52 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 6 c1tg6G_ 100.0 55 PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp 7 d1tg6a1 100.0 55 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 8 c3kthD_ 100.0 69 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form 9 c2cbyG_ 100.0 55 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis 10 c2f6iG_ 100.0 42 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease, putative; PDBTitle: crystal structure of the clpp protease catalytic domain from2 plasmodium falciparum 11 d2cbya1 100.0 55 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 12 d2f6ia1 100.0 42 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 13 c3bezC_ 100.0 24 PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals 14 c2deoA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii 15 c2ej5B_ 99.3 17 PDB header:lyase Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii; PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus 16 d2fw2a1 99.2 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 17 c3fduF_ 99.2 12 PDB header:isomerase Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii 18 c3kqfC_ 99.2 19 PDB header:isomerase Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: 1.8 angstrom resolution crystal structure of enoyl-coa hydratase from2 bacillus anthracis. 19 c3peaD_ 99.2 14 PDB header:isomerase Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of enoyl-coa hydratase from bacillus anthracis str.2 'ames ancestor' 20 d1hzda_ 99.2 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 21 c3lkeA_ not modelled 99.1 17 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of enoyl-coa hydratase from bacillus2 halodurans 22 c3hrxD_ not modelled 99.1 18 PDB header:lyase Chain: D: PDB Molecule:probable enoyl-coa hydratase; PDBTitle: crystal structure of phenylacetic acid degradation protein paag 23 c2q35A_ not modelled 99.1 12 PDB header:lyase Chain: A: PDB Molecule:curf; PDBTitle: crystal structure of the y82f variant of ech2 decarboxylase domain of2 curf from lyngbya majuscula 24 d1wdka4 not modelled 99.1 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 25 c3trrA_ not modelled 99.1 16 PDB header:isomerase Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 26 c2qq3F_ not modelled 99.1 19 PDB header:lyase Chain: F: PDB Molecule:enoyl-coa hydratase subunit i; PDBTitle: crystal structure of enoyl-coa hydrates subunit i (gk_2039)2 other form from geobacillus kaustophilus hta426 27 c3i47A_ not modelled 99.1 14 PDB header:lyase Chain: A: PDB Molecule:enoyl coa hydratase/isomerase (crotonase); PDBTitle: crystal structure of putative enoyl coa hydratase/isomerase2 (crotonase) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 28 c2iexA_ not modelled 99.1 19 PDB header:lyase Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase; PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426 29 c3rsiA_ not modelled 99.1 16 PDB header:isomerase Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196 30 c3p5mB_ not modelled 99.1 21 PDB header:isomerase Chain: B: PDB Molecule:enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium avium 31 c2fbmB_ not modelled 99.1 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:y chromosome chromodomain protein 1, telomeric isoform b; PDBTitle: acetyltransferase domain of cdy1 32 c3p85A_ not modelled 99.1 15 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure enoyl-coa hydratase from mycobacterium avium 33 c3qxiA_ not modelled 99.1 19 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase echa1; PDBTitle: crystal structure of enoyl-coa hydratase echa1 from mycobacterium2 marinum 34 c3moyA_ not modelled 99.1 19 PDB header:lyase Chain: A: PDB Molecule:probable enoyl-coa hydratase; PDBTitle: crystal structure of probable enoyl-coa hydratase from mycobacterium2 smegmatis 35 d1q52a_ not modelled 99.1 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 36 c3h81A_ not modelled 99.1 20 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase echa8; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis 37 c3h02F_ not modelled 99.1 15 PDB header:lyase Chain: F: PDB Molecule:naphthoate synthase; PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium. 38 c2x58B_ not modelled 99.1 24 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: the crystal structure of mfe1 liganded with coa 39 d1dcia_ not modelled 99.1 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 40 d1uiya_ not modelled 99.1 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 41 c2d3tB_ not modelled 99.1 16 PDB header:lyase, oxidoreductase/transferase Chain: B: PDB Molecule:fatty oxidation complex alpha subunit; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v 42 c2j5iF_ not modelled 99.1 14 PDB header:lyase Chain: F: PDB Molecule:p-hydroxycinnamoyl coa hydratase/lyase; PDBTitle: crystal structure of hydroxycinnamoyl-coa hydratase-lyase 43 d1nzya_ not modelled 99.1 18 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 44 c3njbA_ not modelled 99.1 10 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium smegmatis,2 iodide soak 45 c2hw5F_ not modelled 99.1 22 PDB header:lyase Chain: F: PDB Molecule:enoyl-coa hydratase; PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1 46 c3qreA_ not modelled 99.1 20 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase, echa12_1; PDBTitle: crystal structure of an enoyl-coa hydratase echa12_1 from2 mycobacterium marinum 47 c3r0oA_ not modelled 99.1 14 PDB header:lyase Chain: A: PDB Molecule:carnitinyl-coa dehydratase; PDBTitle: crystal structure of carnitinyl-coa hydratase from mycobacterium avium 48 c3r6hA_ not modelled 99.1 19 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase, echa3; PDBTitle: crystal structure of an enoyl-coa hydratase (echa3) from mycobacterium2 marinum 49 c3g64A_ not modelled 99.1 20 PDB header:lyase Chain: A: PDB Molecule:putative enoyl-coa hydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2) 50 c3isaA_ not modelled 99.0 16 PDB header:hydrolase Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of putative enoyl-coa hydratase/isomerase from2 bordetella parapertussis 51 c3rrvC_ not modelled 99.0 18 PDB header:isomerase Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium paratuberculosis 52 d2f6qa1 not modelled 99.0 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 53 c3l3sF_ not modelled 99.0 15 PDB header:isomerase Chain: F: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of an enoyl-coa hydrotase/isomerase family2 protein from silicibacter pomeroyi 54 d1wz8a1 not modelled 99.0 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 55 c2f6qA_ not modelled 99.0 13 PDB header:isomerase Chain: A: PDB Molecule:peroxisomal 3,2-trans-enoyl-coa isomerase; PDBTitle: the crystal structure of human peroxisomal delta3, delta2 enoyl coa2 isomerase (peci) 56 c3oc7A_ not modelled 99.0 14 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of an enoyl-coa hydratase from mycobacterium avium 57 d1xx4a_ not modelled 99.0 20 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 58 c3qmjA_ not modelled 99.0 15 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase, echa8_6; PDBTitle: crystal structure of enoyl-coa hydratase echa8_6 from mycobacterium2 marinum 59 c2ppyE_ not modelled 99.0 15 PDB header:lyase Chain: E: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of enoyl-coa hydrates (gk_1992) from geobacillus2 kaustophilus hta426 60 d1sg4a1 not modelled 99.0 19 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 61 c3swxB_ not modelled 99.0 16 PDB header:isomerase Chain: B: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 62 d1mj3a_ not modelled 99.0 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 63 c3omeE_ not modelled 99.0 19 PDB header:lyase Chain: E: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of a probable enoyl-coa hydratase from mycobacterium2 smegmatis 64 d1rjma_ not modelled 99.0 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 65 c3laoA_ not modelled 99.0 12 PDB header:lyase, isomerase Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of enoyl-coa hydratase from pseudomonas2 aeruginosa pa01 66 c3q1tB_ not modelled 99.0 14 PDB header:lyase Chain: B: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium avium 67 c2vx2D_ not modelled 99.0 19 PDB header:isomerase Chain: D: PDB Molecule:enoyl-coa hydratase domain-containing protein 3; PDBTitle: crystal structure of human enoyl coenzyme a hydratase2 domain-containing protein 3 (echdc3) 68 c3ju1A_ not modelled 99.0 18 PDB header:lyase, isomerase Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of enoyl-coa hydratase/isomerase family protein 69 c3mybA_ not modelled 99.0 15 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase; PDBTitle: crystal structure of enoyl-coa hydratase mycobacterium smegmatis 70 c3sllC_ not modelled 98.9 14 PDB header:isomerase Chain: C: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 71 c2wtbA_ not modelled 98.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:fatty acid multifunctional protein (atmfp2); PDBTitle: arabidopsis thaliana multifuctional protein, mfp2 72 d1pjha_ not modelled 98.9 9 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 73 d2a7ka1 not modelled 98.9 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 74 c2f9iC_ not modelled 98.9 23 PDB header:transferase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 75 c1rjnC_ not modelled 98.9 17 PDB header:lyase Chain: C: PDB Molecule:menb; PDBTitle: the crystal structure of menb (rv0548c) from mycobacterium2 tuberculosis in complex with the coa portion of naphthoyl coa 76 c3bptA_ not modelled 98.9 16 PDB header:hydrolase Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase; PDBTitle: crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in2 complex with quercetin 77 c3qxzA_ not modelled 98.9 21 PDB header:lyase,isomerase Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 78 c3he2C_ not modelled 98.9 16 PDB header:lyase Chain: C: PDB Molecule:enoyl-coa hydratase echa6; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis 79 c3m6nA_ not modelled 98.9 14 PDB header:lyase Chain: A: PDB Molecule:rpff protein; PDBTitle: crystal structure of rpff 80 c3qkaB_ not modelled 98.8 17 PDB header:lyase Chain: B: PDB Molecule:enoyl-coa hydratase, echa5; PDBTitle: crystal structure of enoyl-coa hydratase echa5 from mycobacterium2 marinum 81 c3h0uB_ not modelled 98.8 17 PDB header:lyase Chain: B: PDB Molecule:putative enoyl-coa hydratase; PDBTitle: crystal structure of a putative enoyl-coa hydratase from2 streptomyces avermitilis 82 c3hinA_ not modelled 98.8 16 PDB header:lyase Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009 83 c3gkbA_ not modelled 98.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative enoyl-coa hydratase; PDBTitle: crystal structure of a putative enoyl-coa hydratase from streptomyces2 avermitilis 84 c1vrgE_ not modelled 98.8 17 PDB header:ligase Chain: E: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of propionyl-coa carboxylase, beta subunit (tm0716)2 from thermotoga maritima at 2.30 a resolution 85 c2pg8C_ not modelled 98.8 15 PDB header:ligand binding protein Chain: C: PDB Molecule:dpgc; PDBTitle: crystal structure of r254k mutanat of dpgc with bound substrate analog 86 c3ot6A_ not modelled 98.8 18 PDB header:isomerase Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase family protein2 from psudomonas syringae 87 d1vrga2 not modelled 98.8 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 88 c3hp0B_ not modelled 98.8 18 PDB header:lyase Chain: B: PDB Molecule:putative polyketide biosynthesis enoyl-coa PDBTitle: crystal structure of a putative polyketide biosynthesis2 enoyl-coa hydratase (pksh) from bacillus subtilis 89 d1ef8a_ not modelled 98.8 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 90 c3glmD_ not modelled 98.7 13 PDB header:lyase Chain: D: PDB Molecule:glutaconyl-coa decarboxylase subunit a; PDBTitle: glutaconyl-coa decarboxylase a subunit from clostridium2 symbiosum co-crystallized with crotonyl-coa 91 d2f9ya1 not modelled 98.7 25 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 92 d1on3a2 not modelled 98.7 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 93 c2w3pB_ not modelled 98.7 16 PDB header:lyase Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase; PDBTitle: boxc crystal structure 94 d1szoa_ not modelled 98.7 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 95 c1on3E_ not modelled 98.7 14 PDB header:transferase Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound) 96 c1pixB_ not modelled 98.7 15 PDB header:lyase Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit; PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase 97 c3n6rF_ not modelled 98.7 22 PDB header:ligase Chain: F: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) 98 d1pixa3 not modelled 98.7 12 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 99 c3u9rB_ not modelled 98.7 16 PDB header:ligase Chain: B: PDB Molecule:methylcrotonyl-coa carboxylase, beta-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc), beta subunit 100 c2j5gL_ not modelled 98.6 13 PDB header:hydrolase Chain: L: PDB Molecule:alr4455 protein; PDBTitle: the native structure of a beta-diketone hydrolase from the2 cyanobacterium anabaena sp. pcc 7120 101 c2a7sD_ not modelled 98.6 13 PDB header:ligase Chain: D: PDB Molecule:probable propionyl-coa carboxylase beta chain 5; PDBTitle: crystal structure of the acyl-coa carboxylase, accd5, from2 mycobacterium tuberculosis 102 c1xnwD_ not modelled 98.5 17 PDB header:ligase Chain: D: PDB Molecule:propionyl-coa carboxylase complex b subunit; PDBTitle: acyl-coa carboxylase beta subunit from s. coelicolor (pccb),2 apo form #2, mutant d422i 103 d1xnya2 not modelled 98.5 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 104 d2a7sa2 not modelled 98.5 17 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 105 c1x0uB_ not modelled 98.4 16 PDB header:lyase Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit; PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii 106 c2f9iD_ not modelled 98.0 14 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 107 d1on3a1 not modelled 97.8 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 108 c2f9yB_ not modelled 97.8 18 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 109 d2f9yb1 not modelled 97.8 18 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 110 d1pixa2 not modelled 97.5 9 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 111 d1vrga1 not modelled 97.4 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 112 c2x24B_ not modelled 97.3 17 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase; PDBTitle: bovine acc2 ct domain in complex with inhibitor 113 c1uytC_ not modelled 97.2 15 PDB header:transferase Chain: C: PDB Molecule:acetyl-coa carboxylase; PDBTitle: acetyl-coa carboxylase carboxyltransferase domain 114 d2a7sa1 not modelled 97.2 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 115 c1od4C_ not modelled 97.1 15 PDB header:ligase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase; PDBTitle: acetyl-coa carboxylase carboxyltransferase domain 116 d1xnya1 not modelled 97.1 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 117 c3h0jA_ not modelled 96.3 15 PDB header:transferase Chain: A: PDB Molecule:acetyl-coa carboxylase; PDBTitle: crystal structure of the carboxyltransferase domain of2 acetyl-coenzyme a carboxylase in complex with compound 2 118 c3ff6D_ not modelled 95.6 17 PDB header:ligase Chain: D: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: human acc2 ct domain with cp-640186 119 d1euca2 not modelled 94.1 12 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 120 d1oi7a2 not modelled 92.8 10 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0