Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	W	Q	T	H	T	V	F	N	Q	P	I	P	L	N	N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G	V	Y	D	L	L	S	E	A	F	V	E	V	K	G	Q	D	R	Y	F	D	R	A	V	R	R	L	Q	Q	Q	L	R	K	P	A	E	E
Secondary structure
SS confidence
Disorder																								?												?	?	?	?	?	?	?	?	?	?												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		L	G	R	E	I	T	H	Q	L	F	L	L	G	C	G	A	Q	M	L	K	Y	A	S	P	P	M	A	Q	A	W	C	Q	V	M	L	D	T	R	G	G	V	R	L	S	E	Q	I	Q	N	D	L	L	L	R	A	T	G	G	V	C
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
		.
Sequence		V
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3djl chain A Region: 3 - 540 Aligned: 538 Modelled: 538 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:protein aidb; PDBTitle: crystal structure of alkylation response protein e. coli aidb Phyre2 PDB 2z1q chain A Region: 3 - 538 Aligned: 485 Modelled: 490 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl coa dehydrogenase Phyre2 PDB 3owa chain C Region: 2 - 536 Aligned: 481 Modelled: 488 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis Phyre2 PDB 2uxw chain A Region: 2 - 535 Aligned: 469 Modelled: 481 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase; PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl) Phyre2 PDB 2ix5 chain A Region: 10 - 448 Aligned: 383 Modelled: 395 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coenzyme a oxidase 4, peroxisomal; PDBTitle: short chain specific acyl-coa oxidase from arabidopsis2 thaliana, acx4 in complex with acetoacetyl-coa Phyre2 PDB 2ddh chain A Region: 24 - 441 Aligned: 385 Modelled: 404 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate Phyre2 PDB 1w07 chain A Region: 32 - 441 Aligned: 382 Modelled: 397 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: arabidopsis thaliana acyl-coa oxidase 1 Phyre2 PDB 2fon chain A Region: 32 - 441 Aligned: 383 Modelled: 396 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a; PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato) Phyre2 PDB 1ivh chain D Region: 71 - 442 Aligned: 352 Modelled: 359 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase; PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity Phyre2 PDB 2pg0 chain B Region: 89 - 439 Aligned: 331 Modelled: 338 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus Phyre2 PDB 2a1t chain C Region: 89 - 444 Aligned: 336 Modelled: 343 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific, PDBTitle: structure of the human mcad:etf e165betaa complex Phyre2 PDB 1rx0 chain B Region: 89 - 442 Aligned: 334 Modelled: 341 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8, PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand. Phyre2 PDB 3swo chain A Region: 13 - 444 Aligned: 377 Modelled: 392 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2 Phyre2 PDB 3oib chain B Region: 28 - 439 Aligned: 361 Modelled: 378 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of a putative acyl-coa dehydrogenase from2 mycobacterium smegmatis, iodide soak Phyre2 PDB 2jif chain A Region: 26 - 442 Aligned: 366 Modelled: 382 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) Phyre2 PDB 2wbi chain B Region: 23 - 444 Aligned: 383 Modelled: 391 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 11; PDBTitle: crystal structure of human acyl-coa dehydrogenase 11 Phyre2 PDB 3sf6 chain A Region: 40 - 441 Aligned: 367 Modelled: 389 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of glutaryl-coa dehydrogenase from mycobacterium2 smegmatis Phyre2 PDB 3mkh chain C Region: 28 - 444 Aligned: 379 Modelled: 395 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:nitroalkane oxidase; PDBTitle: podospora anserina nitroalkane oxidase Phyre2 PDB 3r7k chain B Region: 28 - 439 Aligned: 360 Modelled: 373 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: B: PDB Molecule:probable acyl coa dehydrogenase; PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196 Phyre2 PDB 1egc chain B Region: 17 - 442 Aligned: 371 Modelled: 378 Confidence: 100.0% Identity: 19% PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa Phyre2 1 c3djlA_ 2 c2z1qA_ 3 c3owaC_ 4 c2uxwA_ 5 c2ix5A_ 6 c2ddhA_ 7 c1w07A_ 8 c2fonA_ 9 c1ivhD_ 10 c2pg0B_ 11 c2a1tC_ 12 c1rx0B_ 13 c3swoA_ 14 c3oibB_ 15 c2jifA_ 16 c2wbiB_ 17 c3sf6A_ 18 c3mkhC_ 19 c3r7kB_ 20 c1egcB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3djlA_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:protein aidb; PDBTitle: crystal structure of alkylation response protein e. coli aidb 2 c2z1qA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl coa dehydrogenase 3 c3owaC_ 100.0 16 PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis 4 c2uxwA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase; PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl) 5 c2ix5A_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coenzyme a oxidase 4, peroxisomal; PDBTitle: short chain specific acyl-coa oxidase from arabidopsis2 thaliana, acx4 in complex with acetoacetyl-coa 6 c2ddhA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate 7 c1w07A_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: arabidopsis thaliana acyl-coa oxidase 1 8 c2fonA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a; PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato) 9 c1ivhD_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase; PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity 10 c2pg0B_ 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus 11 c2a1tC_ 100.0 20 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific, PDBTitle: structure of the human mcad:etf e165betaa complex 12 c1rx0B_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8, PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand. 13 c3swoA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2 14 c3oibB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of a putative acyl-coa dehydrogenase from2 mycobacterium smegmatis, iodide soak 15 c2jifA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) 16 c2wbiB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 11; PDBTitle: crystal structure of human acyl-coa dehydrogenase 11 17 c3sf6A_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of glutaryl-coa dehydrogenase from mycobacterium2 smegmatis 18 c3mkhC_ 100.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nitroalkane oxidase; PDBTitle: podospora anserina nitroalkane oxidase 19 c3r7kB_ 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:probable acyl coa dehydrogenase; PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196 20 c1egcB_ 100.0 19 PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa 21 c1bucB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:butyryl-coa dehydrogenase; PDBTitle: three-dimensional structure of butyryl-coa dehydrogenase from2 megasphaera elsdenii 22 c1ukwA_ not modelled 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of medium-chain acyl-coa dehydrogenase2 from thermus thermophilus hb8 23 c1siqA_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: the crystal structure and mechanism of human glutaryl-coa2 dehydrogenase 24 c2vigC_ not modelled 100.0 25 PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,; PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase 25 c3pfdB_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of an acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to reduced flavin adenine dinucleotide solved3 by combined iodide ion sad mr 26 c2ebaI_ not modelled 100.0 18 PDB header:oxidoreductase Chain: I: PDB Molecule:putative glutaryl-coa dehydrogenase; PDBTitle: crystal structure of the putative glutaryl-coa dehydrogenase from2 thermus thermophilus 27 c2cx9C_ not modelled 100.0 24 PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase 28 c1r2jA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein fkbi; PDBTitle: fkbi for biosynthesis of methoxymalonyl extender unit of2 fk520 polyketide immunosuppresant 29 c3mpjG_ not modelled 100.0 22 PDB header:oxidoreductase Chain: G: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: structure of the glutaryl-coenzyme a dehydrogenase 30 c2rehD_ not modelled 100.0 15 PDB header:oxidoreductase Chain: D: PDB Molecule:nitroalkane oxidase; PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase 31 c2dvlB_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of project tt0160 from thermus thermophilus hb8 32 c3eomD_ not modelled 100.0 19 PDB header:oxidoreductase Chain: D: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from2 burkholderia pseudomallei 33 c3nf4B_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide 34 c3m9vA_ not modelled 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp 35 c2jbtA_ not modelled 100.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:p-hydroxyphenylacetate hydroxylase c2\:oxygenase PDBTitle: structure of the monooxygenase component of p-2 hydroxyphenylacetate hydroxylase from acinetobacter3 baumannii 36 c2rfqA_ not modelled 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hsa hydroxylase, oxygenase; PDBTitle: crystal structure of 3-hsa hydroxylase from rhodococcus sp. rha1 37 c2or0B_ not modelled 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:hydroxylase; PDBTitle: structural genomics, the crystal structure of a putative hydroxylase2 from rhodococcus sp. rha1 38 c3mxlB_ not modelled 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrososynthase; PDBTitle: crystal structure of nitrososynthase from micromonospora carbonacea2 var. africana 39 c3hwcD_ not modelled 100.0 11 PDB header:oxidoreductase Chain: D: PDB Molecule:chlorophenol-4-monooxygenase component 2; PDBTitle: crystal structure of chlorophenol 4-monooxygenase (tftd) of2 burkholderia cepacia ac1100 40 c2yyjA_ not modelled 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylacetate-3-hydroxylase; PDBTitle: crystal structure of the oxygenase component (hpab) of 4-2 hydroxyphenylacetate 3-monooxygenase complexed with fad and 4-3 hydroxyphenylacetate 41 d1w07a1 not modelled 100.0 21 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 42 c1u8vA_ not modelled 100.0 16 PDB header:lyase, isomerase Chain: A: PDB Molecule:gamma-aminobutyrate metabolism PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin 43 d2ddha1 not modelled 100.0 17 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 44 d1rx0a1 not modelled 100.0 23 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 45 d2ddha3 not modelled 100.0 16 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:acyl-CoA oxidase N-terminal domains 46 d1siqa1 not modelled 100.0 21 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 47 d3mdea1 not modelled 100.0 24 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 48 d1ivha1 not modelled 100.0 20 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 49 d2c12a1 not modelled 100.0 17 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 50 d1egda1 not modelled 100.0 24 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 51 d1jqia1 not modelled 100.0 27 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 52 d1ukwa1 not modelled 100.0 27 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 53 d1w07a3 not modelled 100.0 17 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:acyl-CoA oxidase N-terminal domains 54 d2d29a1 not modelled 100.0 25 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 55 d1buca1 not modelled 100.0 24 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 56 d1jqia2 not modelled 100.0 21 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 57 d1r2ja1 not modelled 100.0 22 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 58 d1buca2 not modelled 99.9 22 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 59 d1r2ja2 not modelled 99.9 19 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 60 d2c12a2 not modelled 99.9 14 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 61 d1ukwa2 not modelled 99.9 21 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 62 d2d29a2 not modelled 99.9 23 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 63 d1ivha2 not modelled 99.9 19 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 64 d1rx0a2 not modelled 99.9 19 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 65 d3mdea2 not modelled 99.9 16 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 66 d1egda2 not modelled 99.9 15 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 67 d1siqa2 not modelled 99.9 18 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 68 d1u8va2 not modelled 99.7 17 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 69 d1u8va1 not modelled 89.5 14 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 70 d1w96a2 not modelled 27.0 27 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 71 d1ulza2 not modelled 25.0 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 72 d2j9ga2 not modelled 22.9 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 73 d2plsa1 not modelled 20.3 54 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 74 c3ktwA_ not modelled 19.5 18 PDB header:rna/rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: crystal structure of the srp19/s-domain srp rna complex of sulfolobus2 solfataricus 75 d2ezwa1 not modelled 18.4 18 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 76 d2cnza1 not modelled 14.7 21 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 77 d2co3a1 not modelled 14.7 21 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 78 c2b9kA_ not modelled 11.9 33 PDB header:antibiotic Chain: A: PDB Molecule:antimicrobial peptide lci; PDBTitle: solution structure of lci, an amp from bacillus subtilis 79 d1udxa3 not modelled 11.4 13 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 80 d1saza2 not modelled 10.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 81 c2qsdB_ not modelled 10.1 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis 82 d1wgsa_ not modelled 10.1 31 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo barrel domain 83 d1xsqa_ not modelled 9.1 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 84 c1rr7A_ not modelled 8.1 20 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 85 d1rr7a_ not modelled 8.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 86 d1c9ka_ not modelled 8.1 35 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 87 d1vjia_ not modelled 8.0 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 88 d1oyaa_ not modelled 7.9 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 89 c3eopB_ not modelled 7.7 15 PDB header:unknown function Chain: B: PDB Molecule:thymocyte nuclear protein 1; PDBTitle: crystal structure of the duf55 domain of human thymocyte nuclear2 protein 1 90 c3ghnA_ not modelled 7.6 37 PDB header:hydrolase Chain: A: PDB Molecule:a disintegrin and metalloproteinase with thrombospondin PDBTitle: crystal structure of the exosite-containing fragment of human adamts132 (form-2) 91 c3gquA_ not modelled 7.6 24 PDB header:rna binding protein Chain: A: PDB Molecule:nop5p protein; PDBTitle: pyrococcus horikoshii nop5 rna binding domain 92 d2bdra1 not modelled 7.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 93 c2aydA_ not modelled 7.5 33 PDB header:transcription Chain: A: PDB Molecule:wrky transcription factor 1; PDBTitle: crystal structure of the c-terminal wrky domainof atwrky1,2 an sa-induced and partially npr1-dependent transcription3 factor 94 d1co4a_ not modelled 7.5 29 Fold:Zinc domain conserved in yeast copper-regulated transcription factors Superfamily:Zinc domain conserved in yeast copper-regulated transcription factors Family:Zinc domain conserved in yeast copper-regulated transcription factors 95 d1djqa1 not modelled 7.3 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 96 d1k8fa_ not modelled 7.3 14 Fold:Single-stranded right-handed beta-helix Superfamily:C-terminal domain of adenylylcyclase associated protein Family:C-terminal domain of adenylylcyclase associated protein 97 c2ekoA_ not modelled 7.2 31 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: solution structure of ruh-073, a pseudo chromo domain from2 human cdna 98 c3gkaB_ not modelled 7.1 21 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 99 d1icpa_ not modelled 6.9 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0