PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3eomD_

Fold library id	PDB Header	Molecule	Title
c3eomD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: glutaryl-coa dehydrogenase;	PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase2 from burkholderia pseudomallei

Links to external resources
Added to library: Tue Mar 16 12:52:38 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A T F H W D D P L L L D Q Q L A D D E R M V R D A A H A Y A Q G K L A P R V T E A F R H E T T D A A I F R E M G E I G L L G P T I P E Q Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
G G G G S
T T
T T T
S S T T S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G G P G L D Y V S Y G L I A R E V E R V D S G Y R S M M S V Q S S L V M V P I F E F G S D A Q K E K Y L P K L A T G E W I G C F G L T E P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S
T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M V T R A R K V P G G Y S L S G S K M W I T N S P I A D V F V V W A K L D D G R D E I R G F I L E K G C K G L S A P A I H G K V G L R A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T G G G
S
T T
T T
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T G E I V L D E A F V P E E N I L P H V K G L R G P F T C L N S A R Y G I A W G A L G A A E S C W H I A R Q Y V L D R K Q F G R P L A A N Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G B
T T
T T
T T G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L I Q K K L A D M Q T E I T L G L Q G V L R L G R M K D E G T A A V E I T S I M K R N S C G K A L D I A R L A R D M L G G N D E F G V A R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 .

Sequence L V N L E V V N T Y E G T H D I H A L I L G R A Q T G I Q A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	T	F	H	W	D	D	P	L	L	L	D	Q	Q	L	A	D	D	E	R	M	V	R	D	A	A	H	A	Y	A	Q	G	K	L	A	P	R	V	T	E	A	F	R	H	E	T	T	D	A	A	I	F	R	E	M	G	E	I	G	L	L	G	P	T	I	P	E	Q	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S	T	T		G	G	G	G	S																			T											T				T									T	T		S	S	T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	G	P	G	L	D	Y	V	S	Y	G	L	I	A	R	E	V	E	R	V	D	S	G	Y	R	S	M	M	S	V	Q	S	S	L	V	M	V	P	I	F	E	F	G	S	D	A	Q	K	E	K	Y	L	P	K	L	A	T	G	E	W	I	G	C	F	G	L	T	E	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S																																T	T								S															T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	V	T	R	A	R	K	V	P	G	G	Y	S	L	S	G	S	K	M	W	I	T	N	S	P	I	A	D	V	F	V	V	W	A	K	L	D	D	G	R	D	E	I	R	G	F	I	L	E	K	G	C	K	G	L	S	A	P	A	I	H	G	K	V	G	L	R	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T													T	G	G	G		S																						T	T		T	T										S	S		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	G	E	I	V	L	D	E	A	F	V	P	E	E	N	I	L	P	H	V	K	G	L	R	G	P	F	T	C	L	N	S	A	R	Y	G	I	A	W	G	A	L	G	A	A	E	S	C	W	H	I	A	R	Q	Y	V	L	D	R	K	Q	F	G	R	P	L	A	A	N	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	B		T	T			T	T																																							T	T			G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	I	Q	K	K	L	A	D	M	Q	T	E	I	T	L	G	L	Q	G	V	L	R	L	G	R	M	K	D	E	G	T	A	A	V	E	I	T	S	I	M	K	R	N	S	C	G	K	A	L	D	I	A	R	L	A	R	D	M	L	G	G	N	D	E	F	G	V	A	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														T				T																														T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Sequence	L	V	N	L	E	V	V	N	T	Y	E	G	T	H	D	I	H	A	L	I	L	G	R	A	Q	T	G	I	Q	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S	S															S