PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pfdB_

Fold library id	PDB Header	Molecule	Title
c3pfdB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: acyl-coa dehydrogenase;	PDBTitle: crystal structure of an acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to reduced flavin adenine dinucleotide solved3 by combined iodide ion sad mr

Links to external resources
Added to library: Sat Nov 20 09:18:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E H I A L R E A I R A L A E K E I A P Y A A E V D E K A R F P E E A L A A L N S S G F S A I H V P E E Y G G Q G A D S V A T C I V I E E V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G T T
T
S
T T S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R V D C S A S L I P A V N K L G T M G L I L R G S E E L K K Q V L P A V A S G E A M A S Y A L S E R E A G S D A A S M R T R A V A D G D D W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T S
B T T B S S S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I L N G S K C W I T N G G K S T W Y T V M A V T D P D K G A N G I S A F M V H K D D E G F T V G P K E R K L G I K G S P T T E L Y F E N C R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S
G G G G G G G T T
T T
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I P G D R I I G E P G T G F K T A L A T L D H T R P T I G A Q A V G I A Q G A L D A A I A Y T K E R K Q F G R P V S D N Q G V Q F M L A D M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S T T
T T
T T G G G S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A M K I E A A R L M V Y S A A A R A E R G G F I S A A S K C F A S D V A M E V T T D A V Q L F G G Y G Y T Q D F P V E R M M R D A K I T Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G G G S T T S S T T

. . . . . . . . . 360 . . . . . . . .

Sequence Y E G T N Q I Q R V V M S R A L L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	H	I	A	L	R	E	A	I	R	A	L	A	E	K	E	I	A	P	Y	A	A	E	V	D	E	K	A	R	F	P	E	E	A	L	A	A	L	N	S	S	G	F	S	A	I	H	V	P	E	E	Y	G	G	Q	G	A	D	S	V	A	T	C	I	V	I	E	E	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	G	G	G							T	T														T		S		T	T	S		G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	V	D	C	S	A	S	L	I	P	A	V	N	K	L	G	T	M	G	L	I	L	R	G	S	E	E	L	K	K	Q	V	L	P	A	V	A	S	G	E	A	M	A	S	Y	A	L	S	E	R	E	A	G	S	D	A	A	S	M	R	T	R	A	V	A	D	G	D	D	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T														T	T																						T	S									B	T	T	B	S	S	S	G	G	G									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	L	N	G	S	K	C	W	I	T	N	G	G	K	S	T	W	Y	T	V	M	A	V	T	D	P	D	K	G	A	N	G	I	S	A	F	M	V	H	K	D	D	E	G	F	T	V	G	P	K	E	R	K	L	G	I	K	G	S	P	T	T	E	L	Y	F	E	N	C	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T		S								S		G	G	G	G	G	G	G								T	T		T	T										S	S		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	P	G	D	R	I	I	G	E	P	G	T	G	F	K	T	A	L	A	T	L	D	H	T	R	P	T	I	G	A	Q	A	V	G	I	A	Q	G	A	L	D	A	A	I	A	Y	T	K	E	R	K	Q	F	G	R	P	V	S	D	N	Q	G	V	Q	F	M	L	A	D	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G			S	S	T	T												T	T																													T	T			G	G	G	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	M	K	I	E	A	A	R	L	M	V	Y	S	A	A	A	R	A	E	R	G	G	F	I	S	A	A	S	K	C	F	A	S	D	V	A	M	E	V	T	T	D	A	V	Q	L	F	G	G	Y	G	Y	T	Q	D	F	P	V	E	R	M	M	R	D	A	K	I	T	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																															T	G	G	G	G	G	S	T	T	S	S												T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Sequence	Y	E	G	T	N	Q	I	Q	R	V	V	M	S	R	A	L	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S