Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	L	S	F	L	P	G	E	M	T	P	Q	D	R	R	L	I	Q	R	A	L	R	A	L	D	R	H	L	H	E	P	G	V	A	F	T	S	T	H	A	V	R	E	W	L	R	L	H	M	A	A	L	E	R	E	E	F	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	Y	L	D	N	Q	N	Q	L	I	A	H	E	T	L	F	T	G	T	I	N	R	T	E	V	H	P	R	E	V	V	K	R	A	L	H	F	N	A	A	A	V	I	L	A	H	N	H	P	S	G	E	T	T	P	S	Q	A	D
Secondary structure
SS confidence
Disorder																																																					?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Sequence		K	T	L	T	Q	R	L	V	Q	V	L	Q	L	V	D	I	R	V	P	D	H	L	I	V	G	G	R	Q	I	Y	S	F	A	E	H	G	L	L
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qlc chain C Region: 35 - 158 Aligned: 124 Modelled: 124 Confidence: 100.0% Identity: 38% PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein radc homolog; PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls Phyre2 PDB 1oi0 chain A Region: 39 - 156 Aligned: 90 Modelled: 106 Confidence: 96.8% Identity: 21% Fold: Cytidine deaminase-like Superfamily: JAB1/MPN domain Family: JAB1/MPN domain Phyre2 PDB 2kcq chain A Region: 39 - 122 Aligned: 84 Modelled: 84 Confidence: 96.2% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mov34/mpn/pad-1 family; PDBTitle: solution structure of protein sru_2040 from salinibacter2 ruber (strain dsm 13855) . northeast structural genomics3 consortium target srr106 Phyre2 PDB 2kks chain A Region: 39 - 121 Aligned: 83 Modelled: 83 Confidence: 96.1% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein dsy2949 from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr27 Phyre2 PDB 2w6r chain A Region: 58 - 130 Aligned: 71 Modelled: 73 Confidence: 82.3% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels Phyre2 PDB 3tdm chain D Region: 61 - 154 Aligned: 84 Modelled: 94 Confidence: 70.1% Identity: 12% PDB header:de novo protein Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel PDBTitle: computationally designed tim-barrel protein, halfflr Phyre2 PDB 2yci chain X Region: 81 - 140 Aligned: 60 Modelled: 60 Confidence: 62.8% Identity: 20% PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native Phyre2 PDB 2csu chain A domain 1 Region: 90 - 139 Aligned: 47 Modelled: 49 Confidence: 62.7% Identity: 13% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: CoA-binding domain Phyre2 PDB 3jrk chain G Region: 92 - 144 Aligned: 53 Modelled: 53 Confidence: 62.2% Identity: 21% PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes Phyre2 PDB 3q94 chain B Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 60.7% Identity: 18% PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor' Phyre2 PDB 1gvf chain A Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 59.2% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class II FBP aldolase Phyre2 PDB 3c52 chain B Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 55.8% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: class ii fructose-1,6-bisphosphate aldolase from2 helicobacter pylori in complex with3 phosphoglycolohydroxamic acid, a competitive inhibitor Phyre2 PDB 2isw chain B Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 54.6% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate Phyre2 PDB 3pm6 chain B Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 54.6% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase; PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr Phyre2 PDB 1rvg chain A Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 51.7% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class II FBP aldolase Phyre2 PDB 1f6y chain A Region: 81 - 137 Aligned: 56 Modelled: 57 Confidence: 51.4% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Methyltetrahydrofolate-utiluzing methyltransferases Phyre2 PDB 3e49 chain A Region: 83 - 138 Aligned: 55 Modelled: 56 Confidence: 44.2% Identity: 25% PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution Phyre2 PDB 3op1 chain A Region: 75 - 144 Aligned: 67 Modelled: 70 Confidence: 39.5% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae Phyre2 PDB 3elf chain A Region: 90 - 138 Aligned: 44 Modelled: 49 Confidence: 38.9% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase Phyre2 PDB 1hl9 chain A domain 2 Region: 82 - 138 Aligned: 57 Modelled: 57 Confidence: 37.5% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Putative alpha-L-fucosidase, catalytic domain Phyre2 1 c2qlcC_ 2 d1oi0a_ 3 c2kcqA_ 4 c2kksA_ 5 c2w6rA_ 6 c3tdmD_ 7 c2yciX_ 8 d2csua1 9 c3jrkG_ 10 c3q94B_ 11 d1gvfa_ 12 c3c52B_ 13 c2iswB_ 14 c3pm6B_ 15 d1rvga_ 16 d1f6ya_ 17 c3e49A_ 18 c3op1A_ 19 c3elfA_ 20 d1hl9a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qlcC_ 100.0 38 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein radc homolog; PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls 2 d1oi0a_ 96.8 21 Fold:Cytidine deaminase-like Superfamily:JAB1/MPN domain Family:JAB1/MPN domain 3 c2kcqA_ 96.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mov34/mpn/pad-1 family; PDBTitle: solution structure of protein sru_2040 from salinibacter2 ruber (strain dsm 13855) . northeast structural genomics3 consortium target srr106 4 c2kksA_ 96.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein dsy2949 from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr27 5 c2w6rA_ 82.3 14 PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels 6 c3tdmD_ 70.1 12 PDB header:de novo protein Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel PDBTitle: computationally designed tim-barrel protein, halfflr 7 c2yciX_ 62.8 20 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 8 d2csua1 62.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 9 c3jrkG_ 62.2 21 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 10 c3q94B_ 60.7 18 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor' 11 d1gvfa_ 59.2 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 12 c3c52B_ 55.8 16 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: class ii fructose-1,6-bisphosphate aldolase from2 helicobacter pylori in complex with3 phosphoglycolohydroxamic acid, a competitive inhibitor 13 c2iswB_ 54.6 20 PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate 14 c3pm6B_ 54.6 20 PDB header:lyase Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase; PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr 15 d1rvga_ 51.7 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 16 d1f6ya_ 51.4 21 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 17 c3e49A_ 44.2 25 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution 18 c3op1A_ 39.5 13 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 19 c3elfA_ 38.9 14 PDB header:lyase Chain: A: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase 20 d1hl9a2 37.5 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 21 c3t18D_ not modelled 32.9 16 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 22 c3qm3C_ not modelled 32.9 9 PDB header:lyase Chain: C: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni 23 d1dosa_ not modelled 32.6 2 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 24 c3stgA_ not modelled 30.6 11 PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis 25 c2znrA_ not modelled 29.8 12 PDB header:hydrolase Chain: A: PDB Molecule:amsh-like protease; PDBTitle: crystal structure of the dub domain of human amsh-lp 26 c3gndC_ not modelled 28.6 18 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 27 c3k13A_ not modelled 28.4 15 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 28 d2isya2 not modelled 28.0 25 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 29 d3bzka5 not modelled 27.0 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 30 c2x0kB_ not modelled 26.7 15 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 31 d1je0a_ not modelled 24.2 17 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 32 c3c6cA_ not modelled 23.5 17 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 33 d2axtu1 not modelled 23.2 20 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 34 c1s5lu_ not modelled 21.7 20 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 35 c3lotC_ not modelled 21.2 17 PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution 36 c3eypB_ not modelled 20.9 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron 37 d1ybfa_ not modelled 20.5 8 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 38 c2xrfA_ not modelled 20.2 14 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 39 d1ka9f_ not modelled 19.2 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 40 c3fiuD_ not modelled 18.5 16 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 41 d2j9ga2 not modelled 18.0 9 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 42 c3mo4B_ not modelled 17.7 21 PDB header:hydrolase Chain: B: PDB Molecule:alpha-1,3/4-fucosidase; PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697 43 c2y85D_ not modelled 17.5 11 PDB header:isomerase Chain: D: PDB Molecule:phosphoribosyl isomerase a; PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp 44 d1e0fi_ not modelled 16.5 44 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like 45 c1e0fI_ not modelled 16.5 44 PDB header:coagulation/crystal structure/heparin-b Chain: I: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 46 c1kftA_ not modelled 16.1 18 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 47 d1kfta_ not modelled 16.1 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 48 c3guzB_ not modelled 15.9 11 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's 49 c2bdqA_ not modelled 15.6 17 PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15. 50 c3iz5w_ not modelled 15.0 50 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 51 d1oxja2 not modelled 14.6 12 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PHAT domain 52 c1e0fJ_ not modelled 14.6 44 PDB header:coagulation/crystal structure/heparin-b Chain: J: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 53 d1xi3a_ not modelled 14.5 21 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 54 d1x2ia1 not modelled 14.4 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 55 d1ulza2 not modelled 14.4 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 56 d1pzna1 not modelled 14.3 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 57 d1w5da1 not modelled 14.2 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 58 c2w1oA_ not modelled 13.8 33 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 59 d1ywxa1 not modelled 13.7 24 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 60 d2ex2a1 not modelled 13.7 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 61 c1t3tA_ not modelled 13.5 80 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 62 d1k9sa_ not modelled 13.0 14 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 63 d2a1jb1 not modelled 12.8 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 64 c1e0fK_ not modelled 12.5 44 PDB header:coagulation/crystal structure/heparin-b Chain: K: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 65 d1ii7a_ not modelled 12.4 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 66 c1jvnB_ not modelled 12.4 17 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 67 c3av0A_ not modelled 12.3 20 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 68 d1h5ya_ not modelled 12.2 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 69 d2i1qa1 not modelled 12.2 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 70 d1g3wa2 not modelled 11.9 25 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 71 d2aq0a1 not modelled 11.8 11 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 72 c2j8qB_ not modelled 11.8 20 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 73 c3iwpK_ not modelled 11.8 15 PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc 74 c2csuB_ not modelled 11.7 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 75 d1t3ta4 not modelled 11.5 67 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 76 c2it0A_ not modelled 11.4 25 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 77 d1s7ia_ not modelled 11.3 6 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 78 c3a3eB_ not modelled 11.2 16 PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) 79 d1xn9a_ not modelled 11.1 20 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 80 c3no5C_ not modelled 10.8 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution 81 c2xzmP_ not modelled 10.7 28 PDB header:ribosome Chain: P: PDB Molecule:rps24e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 82 c2deoA_ not modelled 10.7 21 PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii 83 c2x5fB_ not modelled 10.6 14 PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase 84 d2qi2a3 not modelled 10.5 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 85 c3chvA_ not modelled 10.4 16 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 86 c3iz6U_ not modelled 10.2 40 PDB header:ribosome Chain: U: PDB Molecule:40s ribosomal protein s24 (s24e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 87 c3izbU_ not modelled 10.2 9 PDB header:ribosome Chain: U: PDB Molecule:40s ribosomal protein s24; PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 88 c2aw5A_ not modelled 10.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent malic enzyme; PDBTitle: crystal structure of a human malic enzyme 89 c2hnhA_ not modelled 10.0 10 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 90 c3glvB_ not modelled 10.0 11 PDB header:biosynthetic protein Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein; PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1 91 c3e02A_ not modelled 9.7 26 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 92 c3zqoK_ not modelled 9.6 17 PDB header:dna-binding protein Chain: K: PDB Molecule:terminase small subunit; PDBTitle: crystal structure of the small terminase oligomerization2 core domain from a spp1-like bacteriophage (crystal form 3) 93 d1szpa1 not modelled 9.4 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 94 c3kinB_ not modelled 9.2 20 PDB header:motor protein Chain: B: PDB Molecule:kinesin heavy chain; PDBTitle: kinesin (dimeric) from rattus norvegicus 95 d1szpb1 not modelled 9.1 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 96 c2y7eA_ not modelled 8.9 25 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 97 d1dfoa_ not modelled 8.7 5 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 98 c3f0hA_ not modelled 8.4 9 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 99 c2wvsD_ not modelled 8.3 23 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0