Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	G	K	I	A	V	E	V	A	Y	A	L	P	E	K	Q	Y	L	Q	R	V	T	L	Q	E	G	A	T	V	E	E	A	I	R	A	S	G	L	L	E	L	R	T	D	I	D	L	T	K	N	K	V	G	I	Y	S	R	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Sequence		K	L	S	D	S	V	H	D	G	D	R	V	E	I	Y	R	P	L	I	A	D	P	K	E	L	R	R	Q	R	A	E	K	S	A	N	K
Secondary structure
SS confidence
Disorder			?			?																												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hj1 chain A Region: 3 - 79 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 52% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae Phyre2 PDB 2hj1 chain A domain 1 Region: 3 - 79 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 52% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: HI0395-like Phyre2 PDB 3hvz chain B Region: 22 - 74 Aligned: 48 Modelled: 48 Confidence: 97.3% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a Phyre2 PDB 2kmm chain A Region: 22 - 82 Aligned: 54 Modelled: 61 Confidence: 97.1% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) Phyre2 PDB 2eki chain A Region: 22 - 74 Aligned: 46 Modelled: 53 Confidence: 96.8% Identity: 20% PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 Phyre2 PDB 1vjk chain A Region: 4 - 77 Aligned: 72 Modelled: 74 Confidence: 96.7% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: MoaD Phyre2 PDB 1zud chain 2 domain 1 Region: 20 - 77 Aligned: 51 Modelled: 58 Confidence: 96.6% Identity: 20% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 1wxq chain A domain 2 Region: 22 - 74 Aligned: 46 Modelled: 53 Confidence: 96.5% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: TGS-like Family: G domain-linked domain Phyre2 PDB 2qie chain B Region: 20 - 79 Aligned: 58 Modelled: 60 Confidence: 96.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z Phyre2 PDB 3po0 chain A Region: 20 - 79 Aligned: 58 Modelled: 60 Confidence: 95.9% Identity: 24% PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii Phyre2 PDB 1tke chain A domain 1 Region: 21 - 74 Aligned: 47 Modelled: 54 Confidence: 95.8% Identity: 13% Fold: beta-Grasp (ubiquitin-like) Superfamily: TGS-like Family: TGS domain Phyre2 PDB 1wgk chain A Region: 1 - 78 Aligned: 76 Modelled: 78 Confidence: 94.9% Identity: 16% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: C9orf74 homolog Phyre2 PDB 3cwi chain A Region: 20 - 77 Aligned: 52 Modelled: 58 Confidence: 94.8% Identity: 23% PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 Phyre2 PDB 2qjl chain A Region: 4 - 78 Aligned: 73 Modelled: 75 Confidence: 94.5% Identity: 14% PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 Phyre2 PDB 2kl0 chain A Region: 20 - 77 Aligned: 50 Modelled: 58 Confidence: 93.2% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 Phyre2 PDB 2g1e chain A Region: 7 - 78 Aligned: 70 Modelled: 72 Confidence: 93.1% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 Phyre2 PDB 2l52 chain A Region: 3 - 79 Aligned: 74 Modelled: 77 Confidence: 92.9% Identity: 22% PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans Phyre2 PDB 1nyr chain A domain 2 Region: 23 - 74 Aligned: 45 Modelled: 52 Confidence: 92.8% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: TGS-like Family: TGS domain Phyre2 PDB 2cu3 chain A domain 1 Region: 21 - 77 Aligned: 49 Modelled: 57 Confidence: 92.7% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 1tyg chain B Region: 20 - 77 Aligned: 51 Modelled: 58 Confidence: 91.9% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 2eh0 chain A Region: 49 - 96 Aligned: 48 Modelled: 48 Confidence: 64.0% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b Phyre2 1 c2hj1A_ 2 d2hj1a1 3 c3hvzB_ 4 c2kmmA_ 5 c2ekiA_ 6 d1vjka_ 7 d1zud21 8 d1wxqa2 9 c2qieB_ 10 c3po0A_ 11 d1tkea1 12 d1wgka_ 13 c3cwiA_ 14 c2qjlA_ 15 c2kl0A_ 16 c2g1eA_ 17 c2l52A_ 18 d1nyra2 19 d2cu3a1 20 d1tygb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 c2eh0A_ 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hj1A_ 100.0 52 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 2 d2hj1a1 100.0 52 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 3 c3hvzB_ 97.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 4 c2kmmA_ 97.1 24 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 5 c2ekiA_ 96.8 20 PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 6 d1vjka_ 96.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 7 d1zud21 96.6 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 8 d1wxqa2 96.5 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 9 c2qieB_ 96.0 21 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 10 c3po0A_ 95.9 24 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 11 d1tkea1 95.8 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 12 d1wgka_ 94.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 13 c3cwiA_ 94.8 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 14 c2qjlA_ 94.5 14 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 15 c2kl0A_ 93.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 16 c2g1eA_ 93.1 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 17 c2l52A_ 92.9 22 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 18 d1nyra2 92.8 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 19 d2cu3a1 92.7 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 20 d1tygb_ 91.9 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 21 d1xo3a_ not modelled 91.5 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 22 d1fm0d_ not modelled 91.0 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 23 c3dwmA_ not modelled 90.9 22 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 24 c3u7zA_ not modelled 89.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 25 c1tygG_ not modelled 89.1 23 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 26 c2dwqB_ not modelled 89.0 16 PDB header:hydrolase Chain: B: PDB Molecule:gtp-binding protein; PDBTitle: thermus thermophilus ychf gtp-binding protein 27 d1v8ca1 not modelled 88.4 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 28 c1wxqA_ not modelled 88.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3 29 c2k9xA_ not modelled 87.2 18 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 30 d1rwsa_ not modelled 86.8 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 31 c1v8cA_ not modelled 86.4 27 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 32 c3rpfC_ not modelled 86.4 20 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 33 c1jalA_ not modelled 84.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ychf protein; PDBTitle: ychf protein (hi0393) 34 c2ohfA_ not modelled 82.0 18 PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein 9; PDBTitle: crystal structure of human ola1 in complex with amppcp 35 c1wwtA_ not modelled 81.3 20 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 36 c1dm9A_ not modelled 70.7 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 37 d1dm9a_ not modelled 70.7 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 38 c1ni3A_ not modelled 70.2 20 PDB header:hydrolase Chain: A: PDB Molecule:ychf gtp-binding protein; PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase 39 c3kt9A_ not modelled 64.6 13 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 40 c2eh0A_ 64.0 13 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 41 d1czpa_ not modelled 59.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 42 c2k6pA_ not modelled 56.7 23 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 43 c1yj5C_ not modelled 55.7 29 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 44 d2fy8a2 not modelled 52.0 13 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 45 c2bs2E_ not modelled 51.6 15 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 46 d1frda_ not modelled 50.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 47 d1xr4a1 not modelled 49.4 40 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 48 d1yjma1 not modelled 49.0 28 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 49 c2wlbB_ not modelled 45.6 19 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 50 d1offa_ not modelled 45.5 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 51 c3fm8A_ not modelled 45.5 14 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 52 c1tkeA_ not modelled 44.2 9 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine 53 d2fug33 not modelled 41.0 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 54 d1p9ka_ not modelled 40.3 8 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 55 d1krha3 not modelled 38.4 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 56 d1pfda_ not modelled 37.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 57 c3p42D_ not modelled 37.6 10 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 58 d1doia_ not modelled 37.2 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 59 c2e6zA_ not modelled 37.0 36 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 60 d3c8ya2 not modelled 36.5 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 61 d2cjoa_ not modelled 34.6 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 62 c1c4cA_ not modelled 34.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 63 d1wlna1 not modelled 34.4 8 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 64 d2bt6a1 not modelled 33.1 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 65 d4fxca_ not modelled 31.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 66 d2vbua1 not modelled 30.8 40 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 67 d2g1la1 not modelled 29.4 8 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 68 d1rp5a2 not modelled 28.9 12 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 69 d1iuea_ not modelled 28.6 6 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 70 c2fugC_ not modelled 28.3 26 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 71 c3l5aA_ not modelled 28.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus 72 c3dh3C_ not modelled 26.4 25 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 73 d1awda_ not modelled 26.0 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 74 d1i7ha_ not modelled 25.6 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 75 c3gqsB_ not modelled 25.3 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 76 d1yvca1 not modelled 25.2 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 77 d1ujxa_ not modelled 23.9 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 78 c2bknA_ not modelled 23.9 7 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein 79 c3ah7A_ not modelled 23.7 15 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 80 d2affa1 not modelled 22.9 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 81 d1frra_ not modelled 22.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 82 d2jioa1 not modelled 22.7 25 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 83 d1fxia_ not modelled 22.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 84 d1vioa2 not modelled 22.3 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 85 d1e0za_ not modelled 22.2 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 86 d2brfa1 not modelled 21.4 21 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 87 d1jq4a_ not modelled 21.1 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 88 d1vyra_ not modelled 20.6 31 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 89 c3lzkC_ not modelled 20.5 44 PDB header:hydrolase Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein; PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021 90 d1iyjb4 not modelled 19.7 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 91 d2iv2x1 not modelled 18.5 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 92 d2ff4a3 not modelled 18.2 22 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 93 d1uhta_ not modelled 17.5 25 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 94 d2f06a1 not modelled 17.2 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 95 d1k25a2 not modelled 17.2 11 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 96 d2q1ma1 not modelled 17.0 36 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 97 d1i94q_ not modelled 16.7 42 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 98 d1t0ya_ not modelled 16.3 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 99 c1t0yA_ not modelled 16.3 10 PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: solution structure of a ubiquitin-like domain from tubulin-2 binding cofactor b

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0