Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	H	I	E	K	Q	A	G	E	L	Q	E	K	L	I	A	V	N	R	V	S	K	T	V	K	G	G	R	I	F	S	F	T	A	L	T	V	V	G	D	G	N	G	R	V	G	F	G	Y	G	K	A	R	E	V	P	A	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	K	A	M	E	K	A	R	R	N	M	I	N	V	A	L	N	N	G	T	L	Q	H	P	V	K	G	V	H	T	G	S	R	V	F	M	Q	P	A	S	E	G	T	G	I	I	A	G	G	A	M	R	A	V	L	E	V	A	G	V
Secondary structure
SS confidence
Disorder																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence		H	N	V	L	A	K	A	Y	G	S	T	N	P	I	N	V	V	R	A	T	I	D	G	L	E	N	M	N	S	P	E	M	V	A	A	K	R	G	K	S	V	E	E	I	L	G	K
Secondary structure
SS confidence
Disorder																																						?								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bbn chain E Region: 11 - 166 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 47% PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 1p6g chain E Region: 10 - 157 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome Phyre2 PDB 2ow8 chain F Region: 10 - 157 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 47% PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. Phyre2 PDB 2xzm chain E Region: 2 - 166 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 1eg0 chain B Region: 4 - 148 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 54% PDB header:ribosome PDB COMPND: Phyre2 PDB 2zkq chain E Region: 11 - 149 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 29% PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1h chain E Region: 11 - 147 Aligned: 137 Modelled: 137 Confidence: 100.0% Identity: 31% PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 3izb chain E Region: 4 - 155 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 30% PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein rps2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 3iz6 chain E Region: 4 - 150 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 33% PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2qal chain E domain 1 Region: 79 - 159 Aligned: 81 Modelled: 81 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Translational machinery components Phyre2 PDB 2uub chain E domain 1 Region: 79 - 157 Aligned: 79 Modelled: 79 Confidence: 100.0% Identity: 41% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Translational machinery components Phyre2 PDB 1pkp chain A domain 1 Region: 78 - 148 Aligned: 71 Modelled: 71 Confidence: 99.9% Identity: 51% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Translational machinery components Phyre2 PDB 2uub chain E domain 2 Region: 10 - 78 Aligned: 69 Modelled: 69 Confidence: 99.9% Identity: 55% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Ribosomal S5 protein, N-terminal domain Phyre2 PDB 1pkp chain A domain 2 Region: 4 - 76 Aligned: 73 Modelled: 73 Confidence: 99.9% Identity: 59% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Ribosomal S5 protein, N-terminal domain Phyre2 PDB 2qal chain E domain 2 Region: 10 - 78 Aligned: 69 Modelled: 69 Confidence: 99.9% Identity: 100% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Ribosomal S5 protein, N-terminal domain Phyre2 PDB 1p42 chain A domain 1 Region: 92 - 106 Aligned: 15 Modelled: 15 Confidence: 58.3% Identity: 47% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC Phyre2 PDB 2go4 chain A Region: 92 - 106 Aligned: 15 Modelled: 15 Confidence: 54.3% Identity: 47% PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514 Phyre2 PDB 3nzk chain B Region: 92 - 106 Aligned: 15 Modelled: 15 Confidence: 51.9% Identity: 40% PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor Phyre2 PDB 2ves chain A Region: 92 - 106 Aligned: 15 Modelled: 15 Confidence: 50.3% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor Phyre2 PDB 2b7t chain A domain 1 Region: 21 - 75 Aligned: 50 Modelled: 55 Confidence: 49.0% Identity: 22% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 1 c3bbnE_ 2 c1p6gE_ 3 c2ow8f_ 4 c2xzmE_ 5 c1eg0B_ 6 c2zkqe_ 7 c1s1hE_ 8 c3izbE_ 9 c3iz6E_ 10 d2qale1 11 d2uube1 12 d1pkpa1 13 d2uube2 14 d1pkpa2 15 d2qale2 16 d1p42a1 17 c2go4A_ 18 c3nzkB_ 19 c2vesA_ 20 d2b7ta1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bbnE_ 100.0 47 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 2 c1p6gE_ 100.0 100 PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome 3 c2ow8f_ 100.0 47 PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 4 c2xzmE_ 100.0 29 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 5 c1eg0B_ 100.0 54 PDB header:ribosome PDB COMPND: 6 c2zkqe_ 100.0 29 PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 7 c1s1hE_ 100.0 31 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 8 c3izbE_ 100.0 30 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein rps2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 9 c3iz6E_ 100.0 33 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 d2qale1 100.0 100 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 11 d2uube1 100.0 41 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 12 d1pkpa1 99.9 51 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 13 d2uube2 99.9 55 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 14 d1pkpa2 99.9 59 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 15 d2qale2 99.9 100 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 16 d1p42a1 58.3 47 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 17 c2go4A_ 54.3 47 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514 18 c3nzkB_ 51.9 40 PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor 19 c2vesA_ 50.3 33 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor 20 d2b7ta1 49.0 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 21 d2nuga2 not modelled 46.6 15 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 22 d2pifa1 not modelled 46.5 22 Fold:PSTPO5379-like Superfamily:PSTPO5379-like Family:PSTPO5379-like 23 c3adjA_ not modelled 43.1 21 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 24 d1x47a1 not modelled 42.1 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 25 d2vapa2 not modelled 41.7 20 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 26 d1stua_ not modelled 40.5 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 27 d1qu6a2 not modelled 40.1 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 28 d1w5fa2 not modelled 39.2 36 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 29 d2b7va1 not modelled 38.1 28 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 30 c2ljhA_ not modelled 37.8 21 PDB header:hydrolase Chain: A: PDB Molecule:double-stranded rna-specific editase adar; PDBTitle: nmr structure of double-stranded rna-specific editase adar 31 d1rq2a2 not modelled 37.4 24 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 32 d1ofua2 not modelled 34.2 20 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 33 d1o0wa2 not modelled 33.9 25 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 34 c3adiC_ not modelled 30.5 25 PDB header:gene regulation/rna Chain: C: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 35 c2zqeA_ not modelled 25.8 33 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 36 d1bf4a_ not modelled 24.2 26 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 37 d1x48a1 not modelled 23.4 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 38 d2dixa1 not modelled 22.4 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 39 d1tzza2 not modelled 21.5 26 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 40 c1t4oA_ not modelled 21.4 30 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 41 d1t4oa_ not modelled 21.4 30 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 42 c3c4tA_ not modelled 20.6 23 PDB header:hydrolase Chain: A: PDB Molecule:endoribonuclease dicer; PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer 43 d1sr9a3 not modelled 20.3 15 Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 44 c2l3jA_ not modelled 17.9 27 PDB header:hydrolase/rna Chain: A: PDB Molecule:double-stranded rna-specific editase 1; PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove 45 d1r4ca_ not modelled 17.3 11 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 46 c2ch9A_ not modelled 16.7 8 PDB header:inhibitor Chain: A: PDB Molecule:cystatin f; PDBTitle: crystal structure of dimeric human cystatin f 47 d2dmya1 not modelled 15.8 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 48 d1bqga2 not modelled 14.9 20 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 49 c2fkpC_ not modelled 14.6 13 PDB header:isomerase Chain: C: PDB Molecule:n-acylamino acid racemase; PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase 50 d1uila_ not modelled 14.5 16 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 51 d1wi9a_ not modelled 14.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 52 c1yywB_ not modelled 14.2 19 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution 53 c3kk4B_ not modelled 14.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 54 c3adlA_ not modelled 14.0 19 PDB header:gene regulation/rna Chain: A: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: structure of trbp2 and its molecule implications for mirna processing 55 d1r0ma2 not modelled 13.7 12 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 56 d1jpdx2 not modelled 13.6 9 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 57 d1jdfa2 not modelled 13.2 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 58 d1cewi_ not modelled 13.2 5 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 59 d1nu5a2 not modelled 12.9 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 60 c3llhB_ not modelled 12.8 31 PDB header:rna binding protein Chain: B: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2 61 d1kn0a_ not modelled 12.7 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 62 c1znnF_ not modelled 12.2 19 PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase 63 d1znna1 not modelled 12.2 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like 64 d1t4lb_ not modelled 12.2 33 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 65 d1di2a_ not modelled 11.8 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 66 c1w5fA_ not modelled 11.8 36 PDB header:cell division Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima) 67 d1uhza_ not modelled 10.7 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 68 c1h2iG_ not modelled 9.9 20 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 69 d2cpna1 not modelled 9.8 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 70 d2mnra2 not modelled 9.6 21 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 71 d1iowa1 not modelled 9.6 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 72 c1w59B_ not modelled 9.4 20 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 73 d1x49a1 not modelled 9.4 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 74 c2khxA_ not modelled 9.4 26 PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif 75 d1t4na_ not modelled 9.3 37 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 76 c3mwzA_ not modelled 9.1 11 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:sialostatin l2; PDBTitle: crystal structure of the selenomethionine derivative of the l 22,47,2 100 m mutant of sialostatin l2 77 d2ux9a1 not modelled 9.0 26 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 78 c3onrI_ not modelled 9.0 15 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 79 c2l2nA_ not modelled 9.0 19 PDB header:rna binding protein, plant protein Chain: A: PDB Molecule:hyponastic leave 1; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1 80 c3oqtP_ not modelled 8.9 26 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 81 c3dfhC_ not modelled 8.7 20 PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 82 c2l33A_ not modelled 8.7 19 PDB header:transcription regulator Chain: A: PDB Molecule:interleukin enhancer-binding factor 3; PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e 83 c2rhoB_ not modelled 8.5 22 PDB header:cell cycle Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s 84 c3l0rA_ not modelled 8.5 17 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cystatin-2; PDBTitle: crystal structure of salivary cystatin from the soft tick ornithodoros2 moubata 85 c1vz0B_ not modelled 8.1 25 PDB header:nuclear protein Chain: B: PDB Molecule:chromosome partitioning protein parb; PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus 86 d2bv3a3 not modelled 7.9 23 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 87 d1azpa_ not modelled 7.8 28 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 88 d1vz0a1 not modelled 7.7 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 89 c2vxyA_ not modelled 7.6 24 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution 90 c2vxaL_ not modelled 7.5 12 PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin 91 c3n4fD_ not modelled 7.3 18 PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 92 c2vawA_ not modelled 7.3 20 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 93 c1l0oC_ not modelled 7.3 13 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 94 d1l0oc_ not modelled 7.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 95 d1roaa_ not modelled 7.1 15 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 96 d1ekza_ not modelled 7.0 21 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 97 d1yeya2 not modelled 6.8 12 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 98 c2ppgB_ not modelled 6.7 21 PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti 99 c2p88E_ not modelled 6.7 15 PDB header:lyase Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579

Binding site prediction

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0