Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77173
DateThu Jan 5 12:25:58 GMT 2012
Unique Job IDe842081890ccb440

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1f46a_
Top template information
Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
Confidence and coverage
Confidence:100.0% Coverage: 42%
138 residues ( 42% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 55% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSKRDDDSYDEDVEDD
Secondary structure 
SS confidence 
Disorder  ??
?
???????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPH
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAE
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGP
Secondary structure 
SS confidence 
Disorder  ????????????
?????
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVV
Secondary structure 
SS confidence 
Disorder 
??
?
?
Disorder confidence 
 
   .........310.........320........
Sequence  LDDQRRMMTPQKLREYQDIIREVKDANA
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f46 chain A

3D model

Region: 191 - 328
Aligned: 138
Modelled: 138
Confidence: 100.0%
Identity: 99%
Fold: TBP-like
Superfamily: Cell-division protein ZipA, C-terminal domain
Family: Cell-division protein ZipA, C-terminal domain

Phyre2

PDB 1qmi chain C

3D model

Region: 212 - 292
Aligned: 75
Modelled: 81
Confidence: 79.0%
Identity: 13%
PDB header:rna 3'-terminal phosphate cyclase
Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology

Phyre2

PDB 2knc chain A

3D model

Region: 7 - 39
Aligned: 33
Modelled: 33
Confidence: 75.4%
Identity: 18%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2

PDB 3sok chain B

3D model

Region: 4 - 34
Aligned: 31
Modelled: 31
Confidence: 55.5%
Identity: 19%
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima

Phyre2

PDB 2pil chain A

3D model

Region: 4 - 34
Aligned: 31
Modelled: 31
Confidence: 48.9%
Identity: 32%
Fold: Pili subunits
Superfamily: Pili subunits
Family: Pilin

Phyre2

PDB 2knc chain B

3D model

Region: 5 - 27
Aligned: 23
Modelled: 23
Confidence: 45.6%
Identity: 35%
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2

PDB 2axt chain J domain 1

3D model

Region: 7 - 24
Aligned: 18
Modelled: 18
Confidence: 45.0%
Identity: 33%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein J, PsbJ
Family: PsbJ-like

Phyre2

PDB 1afo chain B

3D model

Region: 3 - 30
Aligned: 28
Modelled: 28
Confidence: 43.6%
Identity: 36%
PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures

Phyre2

PDB 2k21 chain A

3D model

Region: 7 - 33
Aligned: 27
Modelled: 27
Confidence: 41.0%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c

Phyre2

PDB 2jwa chain A

3D model

Region: 7 - 33
Aligned: 27
Modelled: 27
Confidence: 40.6%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure

Phyre2

PDB 1oqw chain A

3D model

Region: 4 - 34
Aligned: 31
Modelled: 31
Confidence: 39.3%
Identity: 29%
Fold: Pili subunits
Superfamily: Pili subunits
Family: Pilin

Phyre2

PDB 3pqv chain D

3D model

Region: 212 - 300
Aligned: 84
Modelled: 89
Confidence: 38.3%
Identity: 17%
PDB header:unknown function
Chain: D: PDB Molecule:rcl1 protein;
PDBTitle: cyclase homolog

Phyre2

PDB 2l9u chain A

3D model

Region: 3 - 31
Aligned: 29
Modelled: 29
Confidence: 38.1%
Identity: 24%
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain

Phyre2

PDB 2it3 chain B

3D model

Region: 195 - 224
Aligned: 28
Modelled: 30
Confidence: 33.2%
Identity: 25%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0130 protein ph1069;
PDBTitle: structure of ph1069 protein from pyrococcus horikoshii

Phyre2

PDB 2dvk chain A

3D model

Region: 195 - 223
Aligned: 27
Modelled: 29
Confidence: 32.2%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0130 protein ape0816;
PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix

Phyre2

PDB 2o02 chain A domain 1

3D model

Region: 282 - 325
Aligned: 43
Modelled: 44
Confidence: 31.3%
Identity: 14%
Fold: alpha-alpha superhelix
Superfamily: 14-3-3 protein
Family: 14-3-3 protein

Phyre2

PDB 2qg3 chain B

3D model

Region: 195 - 224
Aligned: 28
Modelled: 30
Confidence: 31.0%
Identity: 32%
PDB header:unknown function
Chain: B: PDB Molecule:upf0130 protein af_2059;
PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution

Phyre2

PDB 1fft chain B domain 2

3D model

Region: 1 - 35
Aligned: 35
Modelled: 35
Confidence: 30.7%
Identity: 20%
Fold: Transmembrane helix hairpin
Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region
Family: Cytochrome c oxidase subunit II-like, transmembrane region

Phyre2

PDB 2jp3 chain A

3D model

Region: 8 - 42
Aligned: 35
Modelled: 35
Confidence: 30.3%
Identity: 20%
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles

Phyre2

PDB 2c1n chain A

3D model

Region: 282 - 325
Aligned: 43
Modelled: 44
Confidence: 28.5%
Identity: 14%
PDB header:signaling protein
Chain: A: PDB Molecule:14-3-3 protein zeta/delta;
PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3

Phyre2
1
d1f46a_
2
c1qmiC_
3
c2kncA_
4
c3sokB_
5
d2pila_
6
c2kncB_
7
d2axtj1
8
c1afoB_
9
c2k21A_
10
c2jwaA_
11
d1oqwa_
12
c3pqvD_
13
c2l9uA_
14
c2it3B_
15
c2dvkA_
16
d2o02a1
17
c2qg3B_
18
d1fftb2
19
c2jp3A_
20
c2c1nA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
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44
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46
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48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
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68
69
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71
72
73
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80
81
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98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f46a_
100.0 99 Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
2c1qmiC_
79.0 13 PDB header:rna 3'-terminal phosphate cyclase
Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology
3c2kncA_
75.4 18 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
4c3sokB_
55.5 19 PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
5d2pila_
48.9 32 Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
6c2kncB_
45.6 35 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
7d2axtj1
45.0 33 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
8c1afoB_
43.6 36 PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
9c2k21A_
41.0 15 PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
10c2jwaA_
40.6 26 PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
11d1oqwa_
39.3 29 Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
12c3pqvD_
38.3 17 PDB header:unknown function
Chain: D: PDB Molecule:rcl1 protein;
PDBTitle: cyclase homolog
13c2l9uA_
38.1 24 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
14c2it3B_
33.2 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0130 protein ph1069;
PDBTitle: structure of ph1069 protein from pyrococcus horikoshii
15c2dvkA_
32.2 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0130 protein ape0816;
PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix
16d2o02a1
31.3 14 Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
17c2qg3B_
31.0 32 PDB header:unknown function
Chain: B: PDB Molecule:upf0130 protein af_2059;
PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution
18d1fftb2
30.7 20 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
19c2jp3A_
30.3 20 PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
20c2c1nA_
28.5 14 PDB header:signaling protein
Chain: A: PDB Molecule:14-3-3 protein zeta/delta;
PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3
21d1tlja_
not modelled 26.6 25 Fold:SSo0622-like
Superfamily:SSo0622-like
Family:SSo0622-like
22c1tljA_
not modelled 26.6 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0130 protein sso0622;
PDBTitle: crystal structure of conserved protein of unknown function2 sso0622 from sulfolobus solfataricus
23d1q1la_
not modelled 25.0 15 Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
24d1hywa_
not modelled 24.0 21 Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
25c1ztbA_
not modelled 22.9 16 PDB header:ligase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis
26d1xrda1
not modelled 22.8 30 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
27d1wfya_
not modelled 22.5 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
28c2jo1A_
not modelled 22.1 33 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
29c2k1aA_
not modelled 21.9 14 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
30d1ijda_
not modelled 21.6 60 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
31c2x2oA_
not modelled 21.1 15 PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state
32d1o9da_
not modelled 18.4 7 Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
33d1mx3a2
not modelled 17.9 19 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
34d1nkza_
not modelled 17.5 43 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
35c2mltB_
not modelled 17.2 33 PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
36c2npmB_
not modelled 16.9 7 PDB header:protein binding
Chain: B: PDB Molecule:14-3-3 domain containing protein;
PDBTitle: crystal structure of cryptosporidium parvum 14-3-3 protein2 in complex with peptide
37c2mltA_
not modelled 16.9 33 PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
38d1c99a_
not modelled 16.0 26 Fold:Transmembrane helix hairpin
Superfamily:F1F0 ATP synthase subunit C
Family:F1F0 ATP synthase subunit C
39d1qw1a1
not modelled 16.0 16 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
40d1qxoa_
not modelled 15.9 14 Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
41c1qcrD_
not modelled 15.1 25 PDB header:
PDB COMPND:
42c1fftG_
not modelled 14.2 18 PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
43c2kluA_
not modelled 14.1 32 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
44c3u5eL_
not modelled 14.0 14 PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l13-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution
45c3e6yB_
not modelled 13.5 9 PDB header:signaling protein
Chain: B: PDB Molecule:14-3-3-like protein c;
PDBTitle: structure of 14-3-3 in complex with the differentiation-inducing agent2 cotylenin a
46c2kxhB_
not modelled 13.5 50 PDB header:protein binding
Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1;
PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide
47d2o8pa1
not modelled 13.1 17 Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
48c4a1bO_
not modelled 12.9 22 PDB header:ribosome
Chain: O: PDB Molecule:rpl28;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
49c2k9yA_
not modelled 12.8 23 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
50c2k9yB_
not modelled 12.8 23 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
51c2hg5D_
not modelled 12.2 4 PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
52c2zxeG_
not modelled 12.2 20 PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
53d1ydla1
not modelled 11.9 20 Fold:TFB5-like
Superfamily:TFB5-like
Family:TFB5-like
54c3bwwA_
not modelled 11.8 23 PDB header:metal binding protein
Chain: A: PDB Molecule:protein of unknown function duf692/cog3220;
PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution
55c3cs5B_
not modelled 11.6 27 PDB header:photosynthesis
Chain: B: PDB Molecule:phycobilisome degradation protein nbla;
PDBTitle: nbla protein from synechococcus elongatus pcc 7942
56c2j7aC_
not modelled 11.2 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
57d2nlya1
not modelled 10.7 12 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
58c3dgpB_
not modelled 10.5 21 PDB header:transcription
Chain: B: PDB Molecule:rna polymerase ii transcription factor b subunit 5;
PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2
59d1ul7a_
not modelled 10.5 3 Fold:TBP-like
Superfamily:KA1-like
Family:Kinase associated domain 1, KA1
60c2pcrA_
not modelled 10.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5
61d1v54i_
not modelled 9.0 13 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIc
Family:Mitochondrial cytochrome c oxidase subunit VIc
62c3mk7F_
not modelled 9.0 19 PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
63d2bkra1
not modelled 8.8 6 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
64d1rlja_
not modelled 8.8 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
65c3n23E_
not modelled 8.5 27 PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
66c2latA_
not modelled 8.2 12 PDB header:membrane protein
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: solution structure of a human minimembrane protein ost4
67d1xzpa3
not modelled 8.1 20 Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:TrmE formyl-THF-binding domain
68c1xzqB_
not modelled 8.1 20 PDB header:hydrolase
Chain: B: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
69c2q74B_
not modelled 7.8 21 PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: mycobacterium tuberculosis suhb
70c2g2bA_
not modelled 7.7 7 PDB header:immune system
Chain: A: PDB Molecule:allograft inflammatory factor 1;
PDBTitle: nmr structure of the human allograft inflammatory factor 1
71c2i7gA_
not modelled 7.6 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
72c3otbB_
not modelled 7.4 23 PDB header:transferase
Chain: B: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex
73c2qflA_
not modelled 7.3 21 PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli
74c1s7fA_
not modelled 7.3 6 PDB header:transferase
Chain: A: PDB Molecule:acetyl transferase;
PDBTitle: riml- ribosomal l7/l12 alpha-n-protein acetyltransferase crystal form2 i (apo)
75c2l2tA_
not modelled 7.2 14 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
76c1qleB_
not modelled 7.2 16 PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment
77c1ar1B_
not modelled 7.2 16 PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
78c3ih5A_
not modelled 7.2 18 PDB header:electron transport
Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit;
PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron
79d3clsd1
not modelled 6.8 12 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
80c3dwcA_
not modelled 6.7 21 PDB header:hydrolase
Chain: A: PDB Molecule:metallocarboxypeptidase;
PDBTitle: trypanosoma cruzi metallocarboxypeptidase 1
81d1ap4a_
not modelled 6.7 17 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
82c2rmzA_
not modelled 6.5 35 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
83c1bh1A_
not modelled 6.2 33 PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: structural studies of d-pro melittin, nmr, 20 structures
84c2l16A_
not modelled 6.0 38 PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
85d1ueka2
not modelled 6.0 31 Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
86c3tcvB_
not modelled 5.9 29 PDB header:transferase
Chain: B: PDB Molecule:gcn5-related n-acetyltransferase;
PDBTitle: crystal structure of a gcn5-related n-acetyltransferase from brucella2 melitensis
87d1fi5a_
not modelled 5.8 15 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
88c1fi5A_
not modelled 5.8 15 PDB header:contractile protein
Chain: A: PDB Molecule:protein (troponin c);
PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i.
89d1a0pa1
not modelled 5.7 11 Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
90d1lf6a2
not modelled 5.6 14 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
91d3ehbb2
not modelled 5.5 16 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
92d1yoba1
not modelled 5.4 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
93d2fcka1
not modelled 5.4 16 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
94c2b19A_
not modelled 5.4 22 PDB header:neuropeptide
Chain: A: PDB Molecule:neuropeptide k;
PDBTitle: solution structure of mammalian tachykinin peptide,2 neuropeptide k
95d3dtub2
not modelled 5.3 19 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
96c3kdpH_
not modelled 5.3 27 PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
97c3kdpG_
not modelled 5.3 27 PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
98c3owcA_
not modelled 5.3 16 PDB header:transferase
Chain: A: PDB Molecule:probable acetyltransferase;
PDBTitle: crystal structure of gnat superfamily protein pa2578 from pseudomonas2 aeruginosa
99c3fj2A_
not modelled 5.2 14 PDB header:unknown function
Chain: A: PDB Molecule:monooxygenase-like protein;
PDBTitle: crystal structure of a monooxygenase-like protein (lin2316) from2 listeria innocua at 1.85 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0