Phyre 2 alignment of P77173 with c1qmiC_

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Job Description | P77173
Confidence | 79.01% | Date | Thu Jan 5 12:25:58 GMT 2012
Rank | 2 | Aligned Residues | 75
% Identity | 13% | Template | c1qmiC_
PDB info | PDB header:rna 3'-terminal phosphate cyclase | Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase; | PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology
Resolution | 2.8 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 212 | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |  | . |  | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | L | N | S | I | Q | Q | A | G | F | I | F | G | D | M | N | I | Y | H | R | H | L | S | P | D | G | S | G | P | A | L | F | S | L | A | N | M | V | K | P | G | T | F | D | P | . | E | . | M | K | D | F | T | T | P | G | V | T | I | F | M | Q | V | P | S | Y | G | D | E | L | Q | N | F | K | L | M | L | Q | S | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | E | P | L | L | A | K | I | G | I | H | Q | . | Q | T | T | L | L | R | H | G | F | Y | P | A | G | G | G | V | V | A | T | E | V | S | P | V | A | S | F | N | T | L | Q | L | G | E | R | G | N | I | V | Q | X | R | G | E | V | L | L | A | G | V | P | R | . | . | . | . | . | H | V | A | E | R | E | I | A | T | L
Template Known Secondary structure |  | T |  |  |  |  |  |  | T | T |  |  |  | . |  |  |  |  |  |  |  |  | B | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  | B |  |  | B |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 140 | . | . | . | . | . | . | . | . | . | 150 | . |  | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |  |  |  |  |  | . | . | . | . | . | . | 210 | . | . | .
|  | 290 | . | .
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | Q | H | I
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | A | G | S
Template Known Secondary structure |  |  |  |
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 214 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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