17/01/2012 13:38:21 : INFO  : Run start: Tue Jan 17 13:38:21 GMT 2012
17/01/2012 13:38:21 : INFO  : Initialised job
17/01/2012 13:38:22 : INFO  : Renaming log file 'phyre2_20120117_133821.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e842081890ccb440/phyre_20120117_133821.log'
17/01/2012 13:38:22 : INFO  : Initialised job:
Sequence
>batch____
MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSKRDDDSYDEDVEDD
EGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPH
PAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAE
PAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGP
ALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVV
LDDQRRMMTPQKLREYQDIIREVKDANA

17/01/2012 13:38:22 : INFO  : Checked sequence
17/01/2012 13:38:22 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 13:38:22 : INFO  : PSI-BLAST 3 iterations
17/01/2012 13:42:21 : INFO  : PSI-BLAST 5 iterations
17/01/2012 13:49:15 : INFO  : Finished PSI-BLAST
17/01/2012 13:49:15 : INFO  : Running Buildali to generate a3m file
17/01/2012 14:03:17 : INFO  : Converting to HMM
17/01/2012 14:03:20 : INFO  : Calibrating HMM
17/01/2012 14:03:28 : INFO  : Searching HMM database
17/01/2012 14:09:56 : INFO  : Finished buildali
17/01/2012 14:09:56 : INFO  : Predicting secondary structure
17/01/2012 14:09:56 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 14:09:56 : INFO  : Predicting Disordered regions
17/01/2012 14:09:56 : INFO  : Predicted Disorder (Disopred)
17/01/2012 14:09:56 : INFO  : Running memsat_svm check
17/01/2012 14:12:28 : INFO  : Running memsat_svm full
17/01/2012 14:16:17 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e842081890ccb440'
17/01/2012 14:16:17 : INFO  : Initialising fold library search
17/01/2012 14:16:17 : INFO  : Initialised search input
17/01/2012 14:16:17 : INFO  : Building Ensemble models
17/01/2012 14:16:17 : INFO  : Building hh.d1f46a_.model.1.pdb
17/01/2012 14:16:18 : INFO  : Building hh.c2kncA_.model.2.pdb
17/01/2012 14:16:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e842081890ccb440/hh.c2kncA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e842081890ccb440/c2kncA_.3.pdb
17/01/2012 14:16:18 : INFO  : Building d1f46a_.1.pdb
17/01/2012 14:16:19 : INFO  : Building c1qmiC_.2.pdb
17/01/2012 14:16:19 : INFO  : Building c2kncA_.3.pdb
17/01/2012 14:16:19 : INFO  : Building c3sokB_.4.pdb
17/01/2012 14:16:20 : INFO  : Building d2pila_.5.pdb
17/01/2012 14:16:20 : INFO  : Building c2kncB_.6.pdb
17/01/2012 14:16:20 : INFO  : Building d2axtj1.7.pdb
17/01/2012 14:16:22 : INFO  : Building c1afoB_.8.pdb
17/01/2012 14:16:22 : INFO  : Building c2k21A_.9.pdb
17/01/2012 14:16:22 : INFO  : Building c2jwaA_.10.pdb
17/01/2012 14:16:22 : INFO  : Building d1oqwa_.11.pdb
17/01/2012 14:16:23 : INFO  : Building c3pqvD_.12.pdb
17/01/2012 14:16:23 : INFO  : Building c2l9uA_.13.pdb
17/01/2012 14:16:24 : INFO  : Building c2it3B_.14.pdb
17/01/2012 14:16:24 : INFO  : Building c2dvkA_.15.pdb
17/01/2012 14:16:24 : INFO  : Building d2o02a1.16.pdb
17/01/2012 14:16:26 : INFO  : Building c2qg3B_.17.pdb
17/01/2012 14:16:27 : INFO  : Building d1fftb2.18.pdb
17/01/2012 14:16:27 : INFO  : Building c2jp3A_.19.pdb
17/01/2012 14:16:27 : INFO  : Building c2c1nA_.20.pdb
17/01/2012 14:16:29 : INFO  : Finished HH model building
17/01/2012 14:16:29 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 14:16:33 : INFO  : html domain output complete ID 'e842081890ccb440'
17/01/2012 14:18:15 : INFO  : Run end  : Tue Jan 17 14:18:15 GMT 2012
