Phyre 2 alignment of P77173 with c3dgpB_

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Job Description | P77173
Confidence | 10.52% | Date | Thu Jan 5 12:25:58 GMT 2012
Rank | 58 | Aligned Residues | 28
% Identity | 21% | Template | c3dgpB_
PDB info | PDB header:transcription | Chain: B: PDB Molecule:rna polymerase ii transcription factor b subunit 5; | PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 301 | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | D | D | Q | R | R | M | M | T | P | Q | K | L | R | E | Y | Q | D | I | I | R | E | V | K | D | A | N | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | D | D | T | H | L | L | V | N | P | S | K | V | E | F | V | K | H | E | L | N | R | L | L | S | K | N | I
Template Known Secondary structure |  |  |  | T | T |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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