Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	I	R	Y	I	D	K	K	D	V	E	N	L	I	E	N	K	I	S	D	D	V	I	I	F	L	S	G	P	T	S	Q	K	T	P	L	S	V	L	R	T	K	D	I	I	A	V	N	G	S	A	Q	Y	L	L	S	N	N
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	V	P	F	I	Y	V	L	T	D	V	R	F	L	H	Q	R	R	D	D	F	Y	K	F	S	Q	R	S	R	Y	T	I	V	N	V	D	V	Y	E	H	A	S	K	E	D	K	L	Y	I	L	Q	N	C	L	V	L	R	S	F	Y
Secondary structure
SS confidence
Disorder																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	R	E	K	G	G	F	I	K	K	I	K	F	N	I	L	R	Q	I	H	K	E	L	L	I	S	V	P	L	S	K	K	G	R	L	V	G	F	C	K	D	I	S	L	G	Y	C	S	C	H	T	I	A	F	A	A	I	Q	I	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	S	L	K	Y	A	R	I	I	C	S	G	L	D	L	T	G	S	C	S	R	F	Y	D	E	N	K	N	P	M	P	S	E	L	S	R	D	L	F	K	I	L	P	F	F	R	F	M	H	D	N	V	K	D	I	N	I	Y	N	L
Secondary structure
SS confidence
Disorder																				?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		S	D	D	T	A	I	S	Y	D	V	I	P	F	I	K	L	Q	D	I	S	A	E	E	S	K	D	M	T	R	K	K	M	Q	Y	R	T	S	T	D	S	Y	A	N
Secondary structure
SS confidence
Disorder							?	?																										?		?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2p2v chain A Region: 15 - 248 Aligned: 204 Modelled: 219 Confidence: 99.6% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-sialyltransferase; PDBTitle: crystal structure analysis of monofunctional alpha-2,3-2 sialyltransferase cst-i from campylobacter jejuni Phyre2 PDB 1ro7 chain A Region: 21 - 248 Aligned: 198 Modelled: 212 Confidence: 99.5% Identity: 19% Fold: Alpha-2,3/8-sialyltransferase CstII Superfamily: Alpha-2,3/8-sialyltransferase CstII Family: Alpha-2,3/8-sialyltransferase CstII Phyre2 PDB 2wqq chain A Region: 22 - 248 Aligned: 194 Modelled: 205 Confidence: 99.5% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-/2,8-sialyltransferase; PDBTitle: crystallographic analysis of monomeric cstii Phyre2 PDB 3lm8 chain D Region: 22 - 67 Aligned: 46 Modelled: 46 Confidence: 91.1% Identity: 22% PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677 Phyre2 PDB 3mel chain C Region: 23 - 67 Aligned: 45 Modelled: 45 Confidence: 87.3% Identity: 13% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein; PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150 Phyre2 PDB 3k94 chain A Region: 24 - 67 Aligned: 44 Modelled: 44 Confidence: 81.9% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2 Phyre2 PDB 3cq9 chain C Region: 21 - 67 Aligned: 46 Modelled: 44 Confidence: 79.9% Identity: 22% PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114 Phyre2 PDB 3l8m chain A Region: 22 - 67 Aligned: 46 Modelled: 45 Confidence: 76.3% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable thiamine pyrophosphokinase; PDBTitle: crystal structure of a probable thiamine pyrophosphokinase2 from staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target id syr86 Phyre2 PDB 3ihk chain C Region: 22 - 67 Aligned: 42 Modelled: 46 Confidence: 75.5% Identity: 14% PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83 Phyre2 PDB 2gv8 chain A domain 2 Region: 17 - 42 Aligned: 26 Modelled: 26 Confidence: 44.2% Identity: 8% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 PDB 1nhp chain A domain 2 Region: 6 - 32 Aligned: 27 Modelled: 27 Confidence: 41.2% Identity: 11% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 PDB 1f8f chain A domain 1 Region: 169 - 192 Aligned: 24 Modelled: 24 Confidence: 39.3% Identity: 25% Fold: GroES-like Superfamily: GroES-like Family: Alcohol dehydrogenase-like, N-terminal domain Phyre2 PDB 1sez chain A domain 1 Region: 21 - 32 Aligned: 12 Modelled: 12 Confidence: 34.8% Identity: 17% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD-linked reductases, N-terminal domain Phyre2 PDB 2r70 chain A Region: 157 - 218 Aligned: 56 Modelled: 62 Confidence: 33.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:infectious bursal virus vp1 polymerase; PDBTitle: crystal structure of infectious bursal disease virus vp12 polymerase, cocrystallized with an oligopeptide mimicking3 the vp3 c-terminus. Phyre2 PDB 2pgg chain A domain 1 Region: 157 - 218 Aligned: 56 Modelled: 62 Confidence: 29.1% Identity: 16% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: RNA-dependent RNA-polymerase Phyre2 PDB 3nks chain A Region: 21 - 32 Aligned: 12 Modelled: 12 Confidence: 26.7% Identity: 17% PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Phyre2 PDB 1qo8 chain A domain 2 Region: 7 - 32 Aligned: 26 Modelled: 26 Confidence: 25.7% Identity: 19% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Phyre2 PDB 2k0z chain A Region: 164 - 192 Aligned: 29 Modelled: 29 Confidence: 25.6% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein hp1203; PDBTitle: solution nmr structure of protein hp1203 from helicobacter pylori2 26695. northeast structural genomics consortium (nesg) target3 pt1/ontario center for structural proteomics target hp1203 Phyre2 PDB 1djq chain A domain 3 Region: 14 - 32 Aligned: 19 Modelled: 19 Confidence: 25.4% Identity: 32% Fold: Nucleotide-binding domain Superfamily: Nucleotide-binding domain Family: N-terminal domain of adrenodoxin reductase-like Phyre2 PDB 1trb chain A domain 1 Region: 21 - 32 Aligned: 12 Modelled: 12 Confidence: 25.3% Identity: 33% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 1 c2p2vA_ 2 d1ro7a_ 3 c2wqqA_ 4 c3lm8D_ 5 c3melC_ 6 c3k94A_ 7 c3cq9C_ 8 c3l8mA_ 9 c3ihkC_ 10 d2gv8a2 11 d1nhpa2 12 d1f8fa1 13 d1seza1 14 c2r70A_ 15 d2pgga1 16 c3nksA_ 17 d1qo8a2 18 c2k0zA_ 19 d1djqa3 20 d1trba1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p2vA_ 99.6 20 PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-sialyltransferase; PDBTitle: crystal structure analysis of monofunctional alpha-2,3-2 sialyltransferase cst-i from campylobacter jejuni 2 d1ro7a_ 99.5 19 Fold:Alpha-2,3/8-sialyltransferase CstII Superfamily:Alpha-2,3/8-sialyltransferase CstII Family:Alpha-2,3/8-sialyltransferase CstII 3 c2wqqA_ 99.5 20 PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-/2,8-sialyltransferase; PDBTitle: crystallographic analysis of monomeric cstii 4 c3lm8D_ 91.1 22 PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677 5 c3melC_ 87.3 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein; PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150 6 c3k94A_ 81.9 18 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2 7 c3cq9C_ 79.9 22 PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114 8 c3l8mA_ 76.3 17 PDB header:transferase Chain: A: PDB Molecule:probable thiamine pyrophosphokinase; PDBTitle: crystal structure of a probable thiamine pyrophosphokinase2 from staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target id syr86 9 c3ihkC_ 75.5 14 PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83 10 d2gv8a2 44.2 8 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 11 d1nhpa2 41.2 11 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 12 d1f8fa1 39.3 25 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 13 d1seza1 34.8 17 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 14 c2r70A_ 33.9 16 PDB header:transferase Chain: A: PDB Molecule:infectious bursal virus vp1 polymerase; PDBTitle: crystal structure of infectious bursal disease virus vp12 polymerase, cocrystallized with an oligopeptide mimicking3 the vp3 c-terminus. 15 d2pgga1 29.1 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 16 c3nksA_ 26.7 17 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase 17 d1qo8a2 25.7 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 18 c2k0zA_ 25.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein hp1203; PDBTitle: solution nmr structure of protein hp1203 from helicobacter pylori2 26695. northeast structural genomics consortium (nesg) target3 pt1/ontario center for structural proteomics target hp1203 19 d1djqa3 25.4 32 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 20 d1trba1 25.3 33 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 21 d1y0pa2 not modelled 25.2 28 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 22 d2io8a1 not modelled 25.1 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Glutathionylspermidine synthase substrate-binding domain-like 23 d2gv8a1 not modelled 25.1 27 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 24 d2bi7a1 not modelled 24.8 23 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 25 c3v76A_ not modelled 24.6 36 PDB header:flavoprotein Chain: A: PDB Molecule:flavoprotein; PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti 26 d1hyua1 not modelled 24.0 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 27 c2jtqA_ not modelled 23.8 22 PDB header:transferase Chain: A: PDB Molecule:phage shock protein e; PDBTitle: rhodanese from e.coli 28 d1h6va1 not modelled 22.7 40 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 29 d1q1ra1 not modelled 21.9 31 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 30 d1w4xa2 not modelled 21.7 9 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 31 c3jskN_ not modelled 21.7 19 PDB header:biosynthetic protein Chain: N: PDB Molecule:cypbp37 protein; PDBTitle: thiazole synthase from neurospora crassa 32 c1ju2A_ not modelled 21.6 30 PDB header:lyase Chain: A: PDB Molecule:hydroxynitrile lyase; PDBTitle: crystal structure of the hydroxynitrile lyase from almond 33 d1l1sa_ not modelled 21.3 16 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 34 d1fl2a1 not modelled 21.2 60 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 35 c2ywlA_ not modelled 21.1 50 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase related protein; PDBTitle: crystal structure of thioredoxin reductase-related protein ttha03702 from thermus thermophilus hb8 36 c1q1wA_ not modelled 21.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:putidaredoxin reductase; PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida 37 c1fcdB_ not modelled 21.0 15 PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution 38 c2vdcI_ not modelled 20.8 23 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 39 d1w4xa1 not modelled 20.7 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 40 d1lpfa1 not modelled 20.1 40 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 41 d1vdca1 not modelled 18.8 40 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 42 d3grsa1 not modelled 18.8 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 43 c3s5wB_ not modelled 18.6 40 PDB header:oxidoreductase Chain: B: PDB Molecule:l-ornithine 5-monooxygenase; PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa 44 d1q1ra2 not modelled 18.3 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 45 c2l1nA_ not modelled 18.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 46 d1dxla1 not modelled 17.8 42 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 47 d2i0za1 not modelled 17.3 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like 48 d1ojta1 not modelled 17.1 40 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 49 c3l80A_ not modelled 17.1 10 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159 50 d1reoa1 not modelled 17.1 17 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 51 c3d1cA_ not modelled 16.9 30 PDB header:oxidoreductase Chain: A: PDB Molecule:flavin-containing putative monooxygenase; PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution 52 d1a9xa3 not modelled 16.7 30 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 53 d1rp0a1 not modelled 16.5 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Thi4-like 54 d3lada1 not modelled 16.5 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 55 d2iida1 not modelled 16.4 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 56 d2gjca1 not modelled 16.2 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Thi4-like 57 d3coxa1 not modelled 16.2 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 58 d1ps9a2 not modelled 15.8 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like 59 d1fl2a2 not modelled 15.8 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 60 c1lqtB_ not modelled 15.6 40 PDB header:oxidoreductase Chain: B: PDB Molecule:fpra; PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase 61 c1vqwB_ not modelled 15.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases 62 c3e5bB_ not modelled 15.4 22 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 63 c3fkjA_ not modelled 15.4 6 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 64 c2xdoC_ not modelled 15.3 31 PDB header:oxidoreductase Chain: C: PDB Molecule:tetx2 protein; PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron 65 d2bcgg1 not modelled 15.2 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 66 d1trba2 not modelled 15.1 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 67 d2f5va1 not modelled 15.0 60 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 68 c2bryA_ not modelled 14.9 13 PDB header:transport Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution 69 c3fimB_ not modelled 14.9 20 PDB header:oxidoreductase Chain: B: PDB Molecule:aryl-alcohol oxidase; PDBTitle: crystal structure of aryl-alcohol-oxidase from pleurotus eryingii 70 c2omkB_ not modelled 14.9 24 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: structure of the bacteroides thetaiotaomicron thiamin2 pyrophosphokinase 71 d1igwa_ not modelled 14.8 26 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 72 d1i8ta1 not modelled 14.7 50 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 73 c2vq7B_ not modelled 14.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:flavin-containing monooxygenase; PDBTitle: bacterial flavin-containing monooxygenase in complex with2 nadp: native data 74 d1d5ta1 not modelled 14.5 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 75 c1zz0C_ not modelled 14.5 16 PDB header:hydrolase Chain: C: PDB Molecule:histone deacetylase-like amidohydrolase; PDBTitle: crystal structure of a hdac-like protein with acetate bound 76 d1ps9a3 not modelled 14.5 15 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 77 c2jbvA_ not modelled 14.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism 78 c3f8rD_ not modelled 14.1 50 PDB header:oxidoreductase Chain: D: PDB Molecule:thioredoxin reductase (trxb-3); PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules 79 c2gqfA_ not modelled 14.1 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd 80 d1vdca2 not modelled 13.9 7 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 81 d1chua2 not modelled 13.8 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 82 d1jnra2 not modelled 13.8 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 83 c2v6oA_ not modelled 13.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin glutathione reductase; PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr) 84 c1sezA_ not modelled 13.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase 85 d2bs2a2 not modelled 13.6 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 86 d2gmha1 not modelled 13.5 50 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 87 c3allA_ not modelled 13.5 8 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a 88 d1feca1 not modelled 13.3 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 89 d1ebda1 not modelled 13.2 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 90 c2pd2A_ not modelled 13.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 91 c2jb1B_ not modelled 13.2 31 PDB header:oxidoreductase Chain: B: PDB Molecule:l-amino acid oxidase; PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine 92 d2gqfa1 not modelled 13.2 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like 93 c3ctyA_ not modelled 13.1 40 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of t. acidophilum thioredoxin reductase 94 d1gtea4 not modelled 12.9 20 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 95 c2gewA_ not modelled 12.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo) 96 d1n4wa1 not modelled 12.8 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 97 c3rhaA_ not modelled 12.8 33 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 98 d2i71a1 not modelled 12.8 35 Fold:SSO1389-like Superfamily:SSO1389-like Family:Cas DxTHG 99 c2bi8A_ not modelled 12.8 23 PDB header:isomerase Chain: A: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from klebsiella pneumoniae with2 reduced fad

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0