PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2omkB_

Fold library id	PDB Header	Molecule	Title
c2omkB_	PDB header: transferase	Chain: B: PDB Molecule: hypothetical protein;	PDBTitle: structure of the bacteroides thetaiotaomicron thiamin2 pyrophosphokinase

Links to external resources
Added to library: Tue Mar 16 12:01:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A M I N E H Y I P Q A I I L A N G E Y P A H E L P L R L L A E A Q F V V C C A A N E Y I S R G H T P D V I I G D G D S L L P E Y K K R F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S
S S S
S T
S
T T
S S
S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I I L Q E T N D Q T K A V H Y L Q S K G I R K I A I V G A T G K R E D H T L G N I S L L V E Y M R S G M E V R T V T D Y G T F I P V S D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S S S
T T
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence Q S F A S Y P G Q Q V S I I N F G A K G L K A E G L F Y P L S D F T N W W Q G T L N E A I A D E F T I H C T G E Y L V F L A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S B S S
S G G G G
S B
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	M	I	N	E	H	Y	I	P	Q	A	I	I	L	A	N	G	E	Y	P	A	H	E	L	P	L	R	L	L	A	E	A	Q	F	V	V	C	C	A	A	N	E	Y	I	S	R	G	H	T	P	D	V	I	I	G	D	G	D	S	L	L	P	E	Y	K	K	R	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B		S					S						S	S	S				S									T		S													T	T				S				S		S	S	S	S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	I	L	Q	E	T	N	D	Q	T	K	A	V	H	Y	L	Q	S	K	G	I	R	K	I	A	I	V	G	A	T	G	K	R	E	D	H	T	L	G	N	I	S	L	L	V	E	Y	M	R	S	G	M	E	V	R	T	V	T	D	Y	G	T	F	I	P	V	S	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																		T	T								S		S	S	S																		T	T								S	S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	Q	S	F	A	S	Y	P	G	Q	Q	V	S	I	I	N	F	G	A	K	G	L	K	A	E	G	L	F	Y	P	L	S	D	F	T	N	W	W	Q	G	T	L	N	E	A	I	A	D	E	F	T	I	H	C	T	G	E	Y	L	V	F	L	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																	S	B	S	S							S	G	G	G	G		S			B		S	S