Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	I	E	V	D	D	E	L	Y	S	Y	I	A	S	H	T	K	H	I	G	E	S	A	S	D	I	L	R	R	M	L	K	F	S	A	A	S	Q	P	A	A	P	V	T	K	E	V	R	V	A	S	P	A	I	V	E	A	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?															?			?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	V	K	T	I	K	D	K	V	R	A	M	R	E	L	L	L	S	D	E	Y	A	E	Q	K	R	A	V	N	R	F	M	L	L	L	S	T	L	Y	S	L	D	A	Q	A	F	A	E	A	T	E	S	L	H	G	R	T	R	V	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	A	A	D	E	Q	T	L	L	K	N	G	N	Q	T	K	P	K	H	V	P	G	T	P	Y	W	V	I	T	N	T	N	T	G	R	K	C	S	M	I	E	H	I	M	Q	S	M	Q	F	P	A	E	L	I	E	K	V	C	G	T
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?																																							?	?
Disorder confidence
		.
Sequence		I
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fmt chain F Region: 1 - 181 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 100% PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna Phyre2 PDB 1j3e chain A Region: 69 - 181 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 98% Fold: Replication modulator SeqA, C-terminal DNA-binding domain Superfamily: Replication modulator SeqA, C-terminal DNA-binding domain Family: Replication modulator SeqA, C-terminal DNA-binding domain Phyre2 PDB 1xrx chain A domain 1 Region: 1 - 35 Aligned: 35 Modelled: 34 Confidence: 99.7% Identity: 94% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: SeqA N-terminal domain-like Phyre2 PDB 1xrx chain D Region: 1 - 35 Aligned: 35 Modelled: 34 Confidence: 99.7% Identity: 94% PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein Phyre2 PDB 3djb chain A domain 1 Region: 158 - 181 Aligned: 24 Modelled: 24 Confidence: 52.4% Identity: 13% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2oq2 chain B Region: 1 - 33 Aligned: 33 Modelled: 33 Confidence: 32.9% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex Phyre2 PDB 2qgs chain A domain 1 Region: 158 - 181 Aligned: 24 Modelled: 24 Confidence: 28.5% Identity: 13% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2hnk chain C Region: 2 - 36 Aligned: 35 Modelled: 35 Confidence: 26.3% Identity: 17% PDB header:transferase Chain: C: PDB Molecule:sam-dependent o-methyltransferase; PDBTitle: crystal structure of sam-dependent o-methyltransferase from2 pathogenic bacterium leptospira interrogans Phyre2 PDB 2o0c chain B Region: 7 - 32 Aligned: 26 Modelled: 26 Confidence: 22.4% Identity: 23% PDB header:signaling protein Chain: B: PDB Molecule:alr2278 protein; PDBTitle: crystal structure of the h-nox domain from nostoc sp. pcc 71202 complexed to no Phyre2 PDB 2byf chain A domain 1 Region: 141 - 175 Aligned: 35 Modelled: 35 Confidence: 21.8% Identity: 14% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ras-binding domain, RBD Phyre2 PDB 2kil chain A Region: 7 - 32 Aligned: 26 Modelled: 26 Confidence: 21.6% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state Phyre2 PDB 2rag chain B Region: 160 - 179 Aligned: 20 Modelled: 20 Confidence: 21.1% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus Phyre2 PDB 1qbj chain C Region: 69 - 97 Aligned: 29 Modelled: 29 Confidence: 21.0% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 2gxb chain A domain 1 Region: 69 - 97 Aligned: 29 Modelled: 29 Confidence: 20.4% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 1u55 chain A Region: 7 - 32 Aligned: 26 Modelled: 26 Confidence: 20.2% Identity: 27% Fold: Ligand-binding domain in the NO signalling and Golgi transport Superfamily: Ligand-binding domain in the NO signalling and Golgi transport Family: H-NOX domain Phyre2 PDB 2i5g chain B Region: 160 - 179 Aligned: 20 Modelled: 18 Confidence: 18.7% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa Phyre2 PDB 1p9o chain A Region: 138 - 169 Aligned: 32 Modelled: 32 Confidence: 18.1% Identity: 13% Fold: Ribokinase-like Superfamily: CoaB-like Family: CoaB-like Phyre2 PDB 1qgp chain A Region: 69 - 97 Aligned: 29 Modelled: 29 Confidence: 17.7% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 2l9b chain A Region: 73 - 111 Aligned: 39 Modelled: 39 Confidence: 16.1% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15; PDBTitle: heterodimer between rna14p monkeytail domain and rna15p hinge domain2 of the yeast cf ia complex Phyre2 PDB 1bm4 chain A Region: 18 - 32 Aligned: 15 Modelled: 15 Confidence: 15.9% Identity: 40% PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog Phyre2 1 c3fmtF_ 2 d1j3ea_ 3 d1xrxa1 4 c1xrxD_ 5 d3djba1 6 c2oq2B_ 7 d2qgsa1 8 c2hnkC_ 9 c2o0cB_ 10 d2byfa1 11 c2kilA_ 12 c2ragB_ 13 d1qbjc_ 14 d2gxba1 15 d1u55a_ 16 c2i5gB_ 17 d1p9oa_ 18 d1qgpa_ 19 c2l9bA_ 20 c1bm4A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fmtF_ 100.0 100 PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna 2 d1j3ea_ 100.0 98 Fold:Replication modulator SeqA, C-terminal DNA-binding domain Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain Family:Replication modulator SeqA, C-terminal DNA-binding domain 3 d1xrxa1 99.7 94 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 4 c1xrxD_ 99.7 94 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 5 d3djba1 52.4 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 6 c2oq2B_ 32.9 18 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 7 d2qgsa1 28.5 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 8 c2hnkC_ 26.3 17 PDB header:transferase Chain: C: PDB Molecule:sam-dependent o-methyltransferase; PDBTitle: crystal structure of sam-dependent o-methyltransferase from2 pathogenic bacterium leptospira interrogans 9 c2o0cB_ 22.4 23 PDB header:signaling protein Chain: B: PDB Molecule:alr2278 protein; PDBTitle: crystal structure of the h-nox domain from nostoc sp. pcc 71202 complexed to no 10 d2byfa1 21.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 11 c2kilA_ 21.6 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state 12 c2ragB_ 21.1 15 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus 13 d1qbjc_ 21.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 14 d2gxba1 20.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 15 d1u55a_ 20.2 27 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:H-NOX domain 16 c2i5gB_ 18.7 20 PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa 17 d1p9oa_ 18.1 13 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 18 d1qgpa_ 17.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 19 c2l9bA_ 16.1 18 PDB header:transcription Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15; PDBTitle: heterodimer between rna14p monkeytail domain and rna15p hinge domain2 of the yeast cf ia complex 20 c1bm4A_ 15.9 40 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 21 d1wxaa1 not modelled 15.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 22 d1hlva2 not modelled 14.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 23 c3kc2A_ not modelled 14.1 21 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 24 c2k7qA_ not modelled 13.6 50 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 25 c3fdgA_ not modelled 13.3 14 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19; PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19 26 d2ev0a2 not modelled 13.2 20 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 27 d2isya2 not modelled 12.7 19 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 28 d1uura2 not modelled 12.5 50 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:STAT DNA-binding domain 29 c2hjmB_ not modelled 12.5 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 30 d1itua_ not modelled 12.3 0 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 31 d2c5lc1 not modelled 11.4 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 32 c3itcA_ not modelled 11.3 3 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 33 c3ec8A_ not modelled 11.1 17 PDB header:cell adhesion Chain: A: PDB Molecule:putative uncharacterized protein flj10324; PDBTitle: the crystal structure of the ra domain of flj10324 (radil) 34 c3jszA_ not modelled 10.9 33 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc 35 d1mp1a_ not modelled 10.9 12 Fold:PWI domain Superfamily:PWI domain Family:PWI domain 36 c1fe6D_ not modelled 10.6 50 PDB header:protein binding Chain: D: PDB Molecule:tetrabrachion; PDBTitle: crystal structure of a naturally occuring parallel right-2 handed coiled-coil tetramer 37 c2x48B_ not modelled 10.6 22 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 38 c2jpfA_ not modelled 9.9 18 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: bpp3783_115-220 39 d2pq7a1 not modelled 9.7 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 40 d2dmca1 not modelled 9.4 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 41 c1ksrA_ not modelled 9.2 31 PDB header:actin binding protein Chain: A: PDB Molecule:gelation factor; PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures 42 d1pzxa_ not modelled 9.0 10 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 43 c3lu2B_ not modelled 8.9 11 PDB header:hydrolase Chain: B: PDB Molecule:lmo2462 protein; PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase 44 d3dtoa1 not modelled 8.4 11 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 45 d1ho8a_ not modelled 8.2 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Regulatory subunit H of the V-type ATPase 46 c1mv4B_ not modelled 8.1 55 PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin 47 d2hh8a1 not modelled 8.0 28 Fold:YdfO-like Superfamily:YdfO-like Family:YdfO-like 48 c1icfB_ not modelled 7.8 30 PDB header:hydrolase Chain: B: PDB Molecule:protein (cathepsin l: light chain); PDBTitle: crystal structure of mhc class ii associated p41 ii fragment in2 complex with cathepsin l 49 c3b40A_ not modelled 7.7 10 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa 50 d2di9a1 not modelled 7.5 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 51 c1v0dA_ not modelled 7.1 31 PDB header:hydrolase Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit; PDBTitle: crystal structure of caspase-activated dnase (cad) 52 d1v0da_ not modelled 7.1 31 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Caspase-activated DNase, CAD (DffB, DFF40) 53 d1nj1a2 not modelled 7.0 27 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 54 c2e9jA_ not modelled 6.8 23 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b 55 c2v9pH_ not modelled 6.7 15 PDB header:hydrolase Chain: H: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 dna-free form 56 c2dchX_ not modelled 6.7 36 PDB header:hydrolase Chain: X: PDB Molecule:putative homing endonuclease; PDBTitle: crystal structure of archaeal intron-encoded homing endonuclease i-2 tsp061i 57 d1dpua_ not modelled 6.6 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 58 c1dpuA_ not modelled 6.6 13 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 59 c2qupA_ not modelled 6.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh1478 protein; PDBTitle: crystal structure of uncharacterized protein bh1478 from bacillus2 halodurans 60 c2j3sB_ not modelled 6.6 36 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the human filamin a ig domains 19 to2 21 61 c1dzlA_ not modelled 6.5 15 PDB header:virus Chain: A: PDB Molecule:late major capsid protein l1; PDBTitle: l1 protein of human papillomavirus 16 62 d1dzla_ not modelled 6.5 15 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 63 c3n92A_ not modelled 6.5 22 PDB header:transferase Chain: A: PDB Molecule:alpha-amylase, gh57 family; PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose 64 c2eqrA_ not modelled 6.2 8 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor corepressor 1; PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1 65 d1jb0d_ not modelled 6.2 31 Fold:Photosystem I subunit PsaD Superfamily:Photosystem I subunit PsaD Family:Photosystem I subunit PsaD 66 c2eayB_ not modelled 6.1 22 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 67 c2htuA_ not modelled 6.1 35 PDB header:hydrolase Chain: A: PDB Molecule:neuraminidase; PDBTitle: n8 neuraminidase in complex with peramivir 68 d1cuka1 not modelled 6.1 7 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 69 d2hq7a1 not modelled 5.8 18 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 70 c3h87D_ not modelled 5.7 23 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 71 c2gxaA_ not modelled 5.7 15 PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp 72 c3salB_ not modelled 5.6 29 PDB header:hydrolase Chain: B: PDB Molecule:neuraminidase; PDBTitle: crystal structure of influenza a virus neuraminidase n5 73 c2bkxB_ not modelled 5.5 29 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily 74 d2cpwa1 not modelled 5.4 29 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 75 d1hc7a3 not modelled 5.4 50 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 76 c3r3hA_ not modelled 5.3 31 PDB header:transferase Chain: A: PDB Molecule:o-methyltransferase, sam-dependent; PDBTitle: crystal structure of o-methyltransferase from legionella pneumophila 77 c2vgqA_ not modelled 5.3 20 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 78 d1f5ta2 not modelled 5.2 11 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 79 c1lnsA_ not modelled 5.1 13 PDB header:hydrolase Chain: A: PDB Molecule:x-prolyl dipeptidyl aminopetidase; PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl2 aminopeptidase from lactococcus lactis 80 d1zpsa1 not modelled 5.1 21 Fold:HisI-like Superfamily:HisI-like Family:HisI-like 81 c1z23A_ not modelled 5.1 14 PDB header:cell adhesion Chain: A: PDB Molecule:crk-associated substrate; PDBTitle: the serine-rich domain from crk-associated substrate2 (p130cas) 82 d2vl8a1 not modelled 5.1 100 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 83 d2a9ua1 not modelled 5.0 19 Fold:alpha-alpha superhelix Superfamily:USP8 N-terminal domain-like Family:USP8 N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0