Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ47146
DateThu Jan 5 12:36:21 GMT 2012
Unique Job IDdacf1d00198aeb7d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2uxwA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase;
PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl)
Confidence and coverage
Confidence:100.0% Coverage: 66%
539 residues ( 66% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNF
Secondary structure 








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   .........70.........80.........90.........100.........110.........120
Sequence  APMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRL
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Disorder 

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   .........130.........140.........150.........160.........170.........180
Sequence  TAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSA
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   .........190.........200.........210.........220.........230.........240
Sequence  YAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFAL
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   .........250.........260.........270.........280.........290.........300
Sequence  TSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEK
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   .........310.........320.........330.........340.........350.........360
Sequence  LLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAG
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   .........370.........380.........390.........400.........410.........420
Sequence  QGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARI
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   .........430.........440.........450.........460.........470.........480
Sequence  AGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQS
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   .........490.........500.........510.........520.........530.........540
Sequence  NFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLF
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   .........550.........560.........570.........580.........590.........600
Sequence  KHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGS
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   .........610.........620.........630.........640.........650.........660
Sequence  LKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLL
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   .........670.........680.........690.........700.........710.........720
Sequence  QNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHN
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   .........730.........740.........750.........760.........770.........780
Sequence  PVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAE
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   .........790.........800.........810....
Sequence  ESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2uxw chain A

3D model

Region: 95 - 676
Aligned: 539
Modelled: 555
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase;
PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl)

Phyre2

PDB 3owa chain C

3D model

Region: 115 - 702
Aligned: 533
Modelled: 551
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: C: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis

Phyre2

PDB 2z1q chain A

3D model

Region: 115 - 702
Aligned: 504
Modelled: 519
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl coa dehydrogenase

Phyre2

PDB 2ix5 chain A

3D model

Region: 58 - 513
Aligned: 401
Modelled: 429
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coenzyme a oxidase 4, peroxisomal;
PDBTitle: short chain specific acyl-coa oxidase from arabidopsis2 thaliana, acx4 in complex with acetoacetyl-coa

Phyre2

PDB 1rx0 chain B

3D model

Region: 116 - 515
Aligned: 374
Modelled: 400
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8,
PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand.

Phyre2

PDB 3sf6 chain A

3D model

Region: 105 - 515
Aligned: 378
Modelled: 399
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: crystal structure of glutaryl-coa dehydrogenase from mycobacterium2 smegmatis

Phyre2

PDB 2a1t chain C

3D model

Region: 119 - 517
Aligned: 377
Modelled: 397
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific,
PDBTitle: structure of the human mcad:etf e165betaa complex

Phyre2

PDB 2vig chain C

3D model

Region: 120 - 522
Aligned: 373
Modelled: 391
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,;
PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase

Phyre2

PDB 1siq chain A

3D model

Region: 107 - 514
Aligned: 379
Modelled: 398
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: the crystal structure and mechanism of human glutaryl-coa2 dehydrogenase

Phyre2

PDB 3oib chain B

3D model

Region: 120 - 507
Aligned: 366
Modelled: 388
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of a putative acyl-coa dehydrogenase from2 mycobacterium smegmatis, iodide soak

Phyre2

PDB 2pg0 chain B

3D model

Region: 120 - 507
Aligned: 368
Modelled: 386
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus

Phyre2

PDB 1ivh chain D

3D model

Region: 116 - 515
Aligned: 379
Modelled: 400
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase;
PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity

Phyre2

PDB 2jif chain A

3D model

Region: 116 - 515
Aligned: 375
Modelled: 394
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase;
PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb)

Phyre2

PDB 3r7k chain B

3D model

Region: 116 - 507
Aligned: 370
Modelled: 392
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable acyl coa dehydrogenase;
PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196

Phyre2

PDB 1egc chain B

3D model

Region: 119 - 517
Aligned: 377
Modelled: 399
Confidence: 100.0%
Identity: 19%
PDB header:electron transfer
Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase;
PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa

Phyre2

PDB 2ddh chain A

3D model

Region: 98 - 662
Aligned: 507
Modelled: 534
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate

Phyre2

PDB 3swo chain A

3D model

Region: 119 - 515
Aligned: 368
Modelled: 386
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2

Phyre2

PDB 1w07 chain A

3D model

Region: 94 - 662
Aligned: 520
Modelled: 546
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: arabidopsis thaliana acyl-coa oxidase 1

Phyre2

PDB 2cx9 chain C

3D model

Region: 119 - 516
Aligned: 378
Modelled: 383
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: C: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase

Phyre2

PDB 3eom chain D

3D model

Region: 107 - 507
Aligned: 365
Modelled: 393
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: D: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from2 burkholderia pseudomallei

Phyre2

PDB 2job chain A

3D model

Region: 747 - 778
Aligned: 32
Modelled: 32
Confidence: 53.7%
Identity: 22%
PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site

Phyre2
1

c2uxwA_
2

c3owaC_
3

c2z1qA_
4

c2ix5A_
5

c1rx0B_
6

c3sf6A_
7

c2a1tC_
8

c2vigC_
9

c1siqA_
10

c3oibB_
11

c2pg0B_
12

c1ivhD_
13

c2jifA_
14

c3r7kB_
15

c1egcB_
16

c2ddhA_
17

c3swoA_
18

c1w07A_
19

c2cx9C_
20

c3eomD_
21



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32



33



34



35



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38



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45



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49



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53



54



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58



59



60



61



62



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65



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67



68



69



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71

c2jobA_
72



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85



86



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90



91



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97



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99






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2uxwA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase;
PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl)
2c3owaC_



100.0 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis
3c2z1qA_



100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl coa dehydrogenase
4c2ix5A_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coenzyme a oxidase 4, peroxisomal;
PDBTitle: short chain specific acyl-coa oxidase from arabidopsis2 thaliana, acx4 in complex with acetoacetyl-coa
5c1rx0B_



100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8,
PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand.
6c3sf6A_



100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: crystal structure of glutaryl-coa dehydrogenase from mycobacterium2 smegmatis
7c2a1tC_



100.0 19 PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific,
PDBTitle: structure of the human mcad:etf e165betaa complex
8c2vigC_



100.0 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,;
PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase
9c1siqA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: the crystal structure and mechanism of human glutaryl-coa2 dehydrogenase
10c3oibB_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of a putative acyl-coa dehydrogenase from2 mycobacterium smegmatis, iodide soak
11c2pg0B_



100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus
12c1ivhD_



100.0 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase;
PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity
13c2jifA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase;
PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb)
14c3r7kB_



100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable acyl coa dehydrogenase;
PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196
15c1egcB_



100.0 19 PDB header:electron transfer
Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase;
PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa
16c2ddhA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
17c3swoA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2
18c1w07A_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: arabidopsis thaliana acyl-coa oxidase 1
19c2cx9C_



100.0 25 PDB header:oxidoreductase
Chain: C: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase
20c3eomD_



100.0 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from2 burkholderia pseudomallei
21c1ukwA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of medium-chain acyl-coa dehydrogenase2 from thermus thermophilus hb8
22c2dvlB_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of project tt0160 from thermus thermophilus hb8
23c2fonA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a;
PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato)
24c3nf4B_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide
25c1bucB_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:butyryl-coa dehydrogenase;
PDBTitle: three-dimensional structure of butyryl-coa dehydrogenase from2 megasphaera elsdenii
26c3mkhC_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:nitroalkane oxidase;
PDBTitle: podospora anserina nitroalkane oxidase
27c1r2jA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein fkbi;
PDBTitle: fkbi for biosynthesis of methoxymalonyl extender unit of2 fk520 polyketide immunosuppresant
28c3djlA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein aidb;
PDBTitle: crystal structure of alkylation response protein e. coli aidb
29c2ebaI_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: I: PDB Molecule:putative glutaryl-coa dehydrogenase;
PDBTitle: crystal structure of the putative glutaryl-coa dehydrogenase from2 thermus thermophilus
30c3mpjG_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: G: PDB Molecule:glutaryl-coa dehydrogenase;
PDBTitle: structure of the glutaryl-coenzyme a dehydrogenase
31c3pfdB_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase;
PDBTitle: crystal structure of an acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to reduced flavin adenine dinucleotide solved3 by combined iodide ion sad mr
32c2wbiB_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 11;
PDBTitle: crystal structure of human acyl-coa dehydrogenase 11
33c2rehD_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitroalkane oxidase;
PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase
34c3m9vA_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent oxidoreductase;
PDBTitle: x-ray structure of a kijd3 in complex with dtdp
35c2jbtA_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxyphenylacetate hydroxylase c2\:oxygenase
PDBTitle: structure of the monooxygenase component of p-2 hydroxyphenylacetate hydroxylase from acinetobacter3 baumannii
36c2or0B_



not modelled 100.0 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:hydroxylase;
PDBTitle: structural genomics, the crystal structure of a putative hydroxylase2 from rhodococcus sp. rha1
37c2rfqA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hsa hydroxylase, oxygenase;
PDBTitle: crystal structure of 3-hsa hydroxylase from rhodococcus sp. rha1
38c3mxlB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrososynthase;
PDBTitle: crystal structure of nitrososynthase from micromonospora carbonacea2 var. africana
39d2ddha3



not modelled 100.0 14 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:acyl-CoA oxidase N-terminal domains
40c3hwcD_



not modelled 100.0 13 PDB header:oxidoreductase
Chain: D: PDB Molecule:chlorophenol-4-monooxygenase component 2;
PDBTitle: crystal structure of chlorophenol 4-monooxygenase (tftd) of2 burkholderia cepacia ac1100
41d1w07a3



not modelled 100.0 17 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:acyl-CoA oxidase N-terminal domains
42d1jqia2



not modelled 100.0 23 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
43d1rx0a2



not modelled 100.0 21 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
44d3mdea2



not modelled 100.0 20 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
45d2c12a2



not modelled 100.0 14 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
46d1r2ja2



not modelled 100.0 22 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
47d2d29a2



not modelled 100.0 28 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
48d1ukwa2



not modelled 100.0 22 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
49d1egda2



not modelled 100.0 20 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
50d1buca2



not modelled 100.0 24 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
51d1ivha2



not modelled 100.0 23 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
52d1siqa2



not modelled 100.0 22 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
53c2yyjA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylacetate-3-hydroxylase;
PDBTitle: crystal structure of the oxygenase component (hpab) of 4-2 hydroxyphenylacetate 3-monooxygenase complexed with fad and 4-3 hydroxyphenylacetate
54c1u8vA_



not modelled 100.0 17 PDB header:lyase, isomerase
Chain: A: PDB Molecule:gamma-aminobutyrate metabolism
PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin
55d1siqa1



not modelled 99.9 17 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
56d1rx0a1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
57d1egda1



not modelled 99.9 18 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
58d3mdea1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
59d1ivha1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
60d1jqia1



not modelled 99.9 22 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
61d1buca1



not modelled 99.9 23 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
62d1ukwa1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
63d2ddha1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
64d1w07a1



not modelled 99.9 16 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
65d2d29a1



not modelled 99.9 20 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
66d2c12a1



not modelled 99.9 15 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
67d1r2ja1



not modelled 99.9 19 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
68d1u8va2



not modelled 99.8 15 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
69d1k8ke_



not modelled 87.9 20 Fold:Arp2/3 complex 21 kDa subunit ARPC3
Superfamily:Arp2/3 complex 21 kDa subunit ARPC3
Family:Arp2/3 complex 21 kDa subunit ARPC3
70d1u8va1



not modelled 76.0 17 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
71c2jobA_



53.7 22 PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
72c2r7bA_



not modelled 43.3 12 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:phosphoinositide-dependent protein kinase 1;
PDBTitle: crystal structure of the phosphoinositide-dependent kinase-2 1 (pdk-1)catalytic domain bound to a dibenzonaphthyridine3 inhibitor
73c2vywA_



not modelled 41.8 10 PDB header:oxygen binding
Chain: A: PDB Molecule:hemoglobin;
PDBTitle: hemoglobin (hb2) from trematode fasciola hepatica
74d1pbya2



not modelled 34.7 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
75d2lhba_



not modelled 32.4 21 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
76d1dgna_



not modelled 31.2 12 Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
77c3exmA_



not modelled 30.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
78d1khba1



not modelled 30.1 18 Fold:PEP carboxykinase-like
Superfamily:PEP carboxykinase-like
Family:PEP carboxykinase C-terminal domain
79d2p12a1



not modelled 29.2 16 Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
80d2cb5a_



not modelled 29.1 19 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Papain-like
81d1h16a_



not modelled 29.0 15 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:PFL-like
82d2hgsa4



not modelled 28.7 31 Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:Eukaryotic glutathione synthetase ATP-binding domain
83d2duca1



not modelled 26.8 14 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
84c2hgsA_



not modelled 26.1 31 PDB header:amine/carboxylate ligase
Chain: A: PDB Molecule:protein (glutathione synthetase);
PDBTitle: human glutathione synthetase
85c3ebnD_



not modelled 25.2 14 PDB header:hydrolase
Chain: D: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
86c3h0dB_



not modelled 24.5 10 PDB header:transcription/dna
Chain: B: PDB Molecule:ctsr;
PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
87c3hf3A_



not modelled 22.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
88d1cqxa1



not modelled 21.3 22 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
89d2io8a3



not modelled 21.0 21 Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:Glutathionylspermidine synthase ATP-binding domain-like
90c1pbyA_



not modelled 20.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
91d1hbga_



not modelled 20.8 12 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
92c1ylmA_



not modelled 20.6 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bsu32300;
PDBTitle: structure of cytosolic protein of unknown function yute2 from bacillus subtilis
93d1oyaa_



not modelled 20.2 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
94d1uu3a_



not modelled 19.7 12 Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Protein kinases, catalytic subunit
95c2q6fB_



not modelled 19.7 17 PDB header:hydrolase
Chain: B: PDB Molecule:infectious bronchitis virus (ibv) main protease;
PDBTitle: crystal structure of infectious bronchitis virus (ibv) main2 protease in complex with a michael acceptor inhibitor n3
96c2zs0A_



not modelled 19.0 14 PDB header:oxygen storage, oxygen transport
Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1;
PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin
97d1djqa1



not modelled 18.3 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
98c2hbpA_



not modelled 18.1 14 PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: solution structure of sla1 homology domain 1
99c3dxrA_



not modelled 18.1 21 PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial import inner membrane translocase
PDBTitle: crystal structure of the yeast inter-membrane space2 chaperone assembly tim9.10

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0