Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	F	L	S	A	L	I	L	L	L	V	T	T	A	A	Q	A	E	R	I	R	D	L	T	S	V	Q	G	V	R	Q	N	S	L	I	G	Y	G	L	V	V	G	L	D	G	T	G	D	Q	T	T	Q	T	P	F	T	T	Q
Secondary structure
SS confidence
Disorder		?												?	?	?	?	?	?	?																													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	L	N	N	M	L	S	Q	L	G	I	T	V	P	T	G	T	N	M	Q	L	K	N	V	A	A	V	M	V	T	A	S	L	P	P	F	G	R	Q	G	Q	T	I	D	V	V	V	S	S	M	G	N	A	K	S	L	R	G	G	T
Secondary structure
SS confidence
Disorder										?			?			?	?	?	?	?	?	?	?												?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	M	T	P	L	K	G	V	D	S	Q	V	Y	A	L	A	Q	G	N	I	L	V	G	G	A	G	A	S	A	G	G	S	S	V	Q	V	N	Q	L	N	G	G	R	I	T	N	G	A	V	I	E	R	E	L	P	S	Q	F	G
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	G	N	T	L	N	L	Q	L	N	D	E	D	F	S	M	A	Q	Q	I	A	D	T	I	N	R	V	R	G	Y	G	S	A	T	A	L	D	A	R	T	I	Q	V	R	V	P	S	G	N	S	S	Q	V	R	F	L	A	D	I	Q
Secondary structure
SS confidence
Disorder			?										?	?																							?	?		?								?	?												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	M	Q	V	N	V	T	P	Q	D	A	K	V	V	I	N	S	R	T	G	S	V	V	M	N	R	E	V	T	L	D	S	C	A	V	A	Q	G	N	L	S	V	T	V	N	R	Q	A	N	V	S	Q	P	D	T	P	F	G	G	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?															?																						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	T	V	V	T	P	Q	T	Q	I	D	L	R	Q	S	G	G	S	L	Q	S	V	R	S	S	A	S	L	N	N	V	V	R	A	L	N	A	L	G	A	T	P	M	D	L	M	S	I	L	Q	S	M	Q	S	A	G	C	L	R	A
Secondary structure
SS confidence
Disorder		?					?	?	?	?	?	?	?	?	?	?	?	?	?				?	?	?	?	?	?											?																		?	?			?
Disorder confidence
		.	.	.	.	.
Sequence		K	L	E	I	I
Secondary structure
SS confidence
Disorder		?				?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3idw chain A Region: 335 - 354 Aligned: 20 Modelled: 20 Confidence: 52.4% Identity: 20% PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 Phyre2 PDB 2a74 chain B Region: 87 - 108 Aligned: 22 Modelled: 22 Confidence: 51.9% Identity: 9% PDB header:immune system Chain: B: PDB Molecule:complement component c3c; PDBTitle: human complement component c3c Phyre2 PDB 3hs0 chain B Region: 87 - 108 Aligned: 22 Modelled: 22 Confidence: 45.5% Identity: 5% PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b Phyre2 PDB 2fhz chain B domain 1 Region: 253 - 263 Aligned: 11 Modelled: 11 Confidence: 26.8% Identity: 64% Fold: Colicin D/E5 nuclease domain Superfamily: Colicin D/E5 nuclease domain Family: Colicin E5 nuclease domain Phyre2 PDB 1h80 chain A Region: 34 - 117 Aligned: 80 Modelled: 83 Confidence: 24.7% Identity: 33% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: iota-carrageenase Phyre2 PDB 2gm2 chain A Region: 47 - 89 Aligned: 40 Modelled: 43 Confidence: 22.9% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 Phyre2 PDB 3es6 chain B domain 1 Region: 88 - 108 Aligned: 21 Modelled: 21 Confidence: 22.8% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: SVA-like Phyre2 PDB 2fvt chain A domain 1 Region: 47 - 89 Aligned: 40 Modelled: 43 Confidence: 22.3% Identity: 25% Fold: MTH938-like Superfamily: MTH938-like Family: MTH938-like Phyre2 PDB 3g6j chain B Region: 87 - 108 Aligned: 22 Modelled: 22 Confidence: 21.1% Identity: 9% PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab Phyre2 PDB 2of5 chain A Region: 323 - 350 Aligned: 28 Modelled: 28 Confidence: 19.9% Identity: 21% PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex Phyre2 PDB 2i1v chain B Region: 41 - 74 Aligned: 29 Modelled: 34 Confidence: 19.9% Identity: 24% PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate Phyre2 PDB 2cka chain A domain 1 Region: 242 - 267 Aligned: 24 Modelled: 26 Confidence: 19.6% Identity: 21% Fold: GYF/BRK domain-like Superfamily: BRK domain-like Family: BRK domain-like Phyre2 PDB 2cka chain A Region: 242 - 267 Aligned: 24 Modelled: 26 Confidence: 19.6% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction Phyre2 PDB 1ueb chain A domain 3 Region: 92 - 105 Aligned: 14 Modelled: 14 Confidence: 19.2% Identity: 36% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1h2i chain G Region: 37 - 70 Aligned: 34 Modelled: 34 Confidence: 18.8% Identity: 26% PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain Phyre2 PDB 2nn6 chain I domain 1 Region: 96 - 115 Aligned: 20 Modelled: 20 Confidence: 17.7% Identity: 35% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3f59 chain A Region: 89 - 126 Aligned: 38 Modelled: 38 Confidence: 17.1% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin Phyre2 PDB 1yfz chain A Region: 195 - 341 Aligned: 104 Modelled: 123 Confidence: 16.9% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis Phyre2 PDB 1yfz chain A domain 1 Region: 195 - 341 Aligned: 104 Modelled: 123 Confidence: 16.9% Identity: 14% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2i8g chain A domain 1 Region: 130 - 143 Aligned: 14 Modelled: 14 Confidence: 16.8% Identity: 36% Fold: Mog1p/PsbP-like Superfamily: Mog1p/PsbP-like Family: DIP2269-like Phyre2 1 c3idwA_ 2 c2a74B_ 3 c3hs0B_ 4 d2fhzb1 5 d1h80a_ 6 c2gm2A_ 7 d3es6b1 8 d2fvta1 9 c3g6jB_ 10 c2of5A_ 11 c2i1vB_ 12 d2ckaa1 13 c2ckaA_ 14 d1ueba3 15 c1h2iG_ 16 d2nn6i1 17 c3f59A_ 18 c1yfzA_ 19 d1yfza1 20 d2i8ga1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3idwA_ 52.4 20 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 2 c2a74B_ 51.9 9 PDB header:immune system Chain: B: PDB Molecule:complement component c3c; PDBTitle: human complement component c3c 3 c3hs0B_ 45.5 5 PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 4 d2fhzb1 26.8 64 Fold:Colicin D/E5 nuclease domain Superfamily:Colicin D/E5 nuclease domain Family:Colicin E5 nuclease domain 5 d1h80a_ 24.7 33 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:iota-carrageenase 6 c2gm2A_ 22.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 7 d3es6b1 22.8 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SVA-like 8 d2fvta1 22.3 25 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 9 c3g6jB_ 21.1 9 PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab 10 c2of5A_ 19.9 21 PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex 11 c2i1vB_ 19.9 24 PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate 12 d2ckaa1 19.6 21 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 13 c2ckaA_ 19.6 21 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 14 d1ueba3 19.2 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 c1h2iG_ 18.8 26 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 16 d2nn6i1 17.7 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 c3f59A_ 17.1 13 PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin 18 c1yfzA_ 16.9 14 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis 19 d1yfza1 16.9 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 20 d2i8ga1 16.8 36 Fold:Mog1p/PsbP-like Superfamily:Mog1p/PsbP-like Family:DIP2269-like 21 d2dy1a4 not modelled 15.2 16 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 22 c2a73B_ not modelled 14.8 9 PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 23 c2j37W_ not modelled 14.5 39 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 24 d1kn0a_ not modelled 14.5 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 25 d2bm0a4 not modelled 13.8 16 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 26 c1wm9D_ not modelled 13.7 23 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 27 c3e4fB_ not modelled 13.5 41 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 28 d1m1ha1 not modelled 13.3 42 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 29 c2o8kA_ not modelled 13.2 27 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 30 d1wura1 not modelled 13.1 23 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 31 c2j9wB_ not modelled 12.8 24 PDB header:protein transport Chain: B: PDB Molecule:vps28-prov protein; PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking 32 d2ckca1 not modelled 12.8 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 33 c2ckcA_ not modelled 12.8 29 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 34 c1dpuA_ not modelled 12.7 6 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 35 d1dpua_ not modelled 12.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 36 d1ge9a_ not modelled 12.5 18 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 37 d1sv6a_ not modelled 12.5 23 Fold:FAH Superfamily:FAH Family:FAH 38 c3gmgB_ not modelled 12.0 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 39 c1bifA_ not modelled 11.9 24 PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate 40 d1iv0a_ not modelled 11.6 30 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 41 c2wl8D_ not modelled 11.2 26 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 42 d2v0ea1 not modelled 11.2 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 43 c3fsyC_ not modelled 11.1 19 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 44 c3r6oA_ not modelled 11.1 15 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus 45 c3ouvA_ not modelled 10.9 24 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb 46 c2zf9D_ not modelled 10.6 31 PDB header:structural protein Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein; PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens 47 c2lf3A_ not modelled 10.5 36 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab3; PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a 48 c3i7tA_ not modelled 10.4 31 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 49 c2jvfA_ not modelled 10.4 22 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 50 d1k6ma1 not modelled 10.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 51 d2q4qa1 not modelled 10.2 25 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 52 d1udxa3 not modelled 10.1 17 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 53 d2k8ea1 not modelled 10.0 22 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 54 c1i7oC_ not modelled 9.8 12 PDB header:isomerase, lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional PDBTitle: crystal structure of hpce 55 c3gtzA_ not modelled 9.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 56 c1d2fB_ not modelled 9.7 25 PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression 57 c2v3cC_ not modelled 9.6 39 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 58 c2ig8C_ not modelled 9.6 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pa3499; PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa 59 c3pisA_ not modelled 9.6 40 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 60 c2b39B_ not modelled 9.5 9 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 61 d2dl6a1 not modelled 9.4 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 62 c2hfuB_ not modelled 9.3 30 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 63 c3ez4B_ not modelled 9.2 21 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 64 c2eb5D_ not modelled 9.2 31 PDB header:lyase Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase; PDBTitle: crystal structure of hpcg complexed with oxalate 65 c3gdwA_ not modelled 9.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 66 c1vpzB_ not modelled 9.1 19 PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 67 c2kmmA_ not modelled 9.1 10 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 68 d1t3da_ not modelled 9.0 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 69 d1vk2a_ not modelled 8.9 34 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 70 d2od5a1 not modelled 8.9 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Marine metagenome family WH1 71 c2od5A_ not modelled 8.9 27 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative nucleic acid binding protein2 (jcvi_pep_1096688149193) from uncultured marine organism at 1.79 a3 resolution 72 d1r17a1 not modelled 8.8 16 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Fibrinogen-binding domain 73 c2jppB_ not modelled 8.8 16 PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna 74 d1cuka1 not modelled 8.7 38 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 75 c3l7qD_ not modelled 8.6 16 PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans 76 c2x7iA_ not modelled 8.6 20 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252 77 c2iy3A_ not modelled 8.6 39 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 78 c2f1rA_ not modelled 8.4 32 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 79 d1ssqa_ not modelled 8.4 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 80 d1x6va3 not modelled 8.3 38 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase) 81 c3dm5A_ not modelled 8.3 43 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 82 c1t3oA_ not modelled 8.2 6 PDB header:rna binding protein Chain: A: PDB Molecule:carbon storage regulator; PDBTitle: solution structure of csra, a bacterial carbon storage2 regulatory protein 83 d1stza1 not modelled 8.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 84 d1a8ra_ not modelled 8.0 21 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 85 c2bpsA_ not modelled 8.0 16 PDB header:ubiquitin Chain: A: PDB Molecule:yukd protein; PDBTitle: ubiquitin-like protein yukd of bacillus subtilis 86 d1vpza_ not modelled 7.9 19 Fold:CsrA-like Superfamily:CsrA-like Family:CsrA-like 87 c3cu7A_ not modelled 7.9 18 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 88 c2kxsA_ not modelled 7.8 22 PDB header:protein binding Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium- PDBTitle: zo1 zu5 domain in complex with grinl1a peptide 89 c2xdyA_ not modelled 7.8 15 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid domain 90 d1y76b1 not modelled 7.6 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 91 c2ea3A_ not modelled 7.6 26 PDB header:hydrolase Chain: A: PDB Molecule:chymotrypsin; PDBTitle: crystal structure of cellulomonas bogoriensis chymotrypsin 92 c1qzwC_ not modelled 7.4 39 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 93 c3k0tA_ not modelled 7.3 11 PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 94 c3gr1A_ not modelled 7.3 46 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 95 c3a3eB_ not modelled 7.3 18 PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) 96 d2k8ea2 not modelled 7.3 23 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 97 c3oyyA_ not modelled 7.2 18 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 98 c1gqqA_ not modelled 7.1 21 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 99 c1dlyA_ not modelled 7.0 25 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0