Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46793
DateThu Jan 5 12:34:14 GMT 2012
Unique Job IDd5701b779f521790

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2g62A_
Top template information
PDB header:hydrolase activator
Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53);
PDBTitle: crystal structure of human ptpa
Confidence and coverage
Confidence: 83.5% Coverage: 34%
80 residues ( 34% of your sequence) have been modelled with 83.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRKKIEMSLIKSPANGVVIKRKISDGLKEIVSLKEKILLETTAKIQSIEEKREEKFIQGY
Secondary structure 










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Disorder  ?????????????














































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   .........70.........80.........90.........100.........110.........120
Sequence  YDGYTKGIIDEMDNFIPLISLLCSELEKKRINMINDLKSILLKPSEEVDVFIKIFESWVT
Secondary structure 




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   .........130.........140.........150.........160.........170.........180
Sequence  KLPSISGPVNLHIPTSFKDKSLEVESYFVDKSIWNVHITFHDDKRFVFFTDQFIAEFSPQ
Secondary structure 



















SS confidence 



























































Disorder 
??????







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?




























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   .........190.........200.........210.........220.........230.....
Sequence  EFVDNCEQYLINNHCFSPDKVNEICEQARHYLVEKMFETHSLDMNNSVLASPEDL
Secondary structure 


















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Disorder 









































?????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2g62 chain A

3D model

Region: 70 - 163
Aligned: 80
Modelled: 80
Confidence: 83.5%
Identity: 21%
PDB header:hydrolase activator
Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53);
PDBTitle: crystal structure of human ptpa

Phyre2

PDB 3k5b chain E

3D model

Region: 18 - 126
Aligned: 109
Modelled: 109
Confidence: 80.4%
Identity: 14%
PDB header:hydrolase
Chain: E: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase

Phyre2

PDB 2ixo chain A domain 1

3D model

Region: 86 - 163
Aligned: 50
Modelled: 50
Confidence: 67.7%
Identity: 14%
Fold: PTPA-like
Superfamily: PTPA-like
Family: PTPA-like

Phyre2

PDB 2ixm chain A domain 1

3D model

Region: 111 - 163
Aligned: 53
Modelled: 53
Confidence: 66.2%
Identity: 21%
Fold: PTPA-like
Superfamily: PTPA-like
Family: PTPA-like

Phyre2

PDB 2ixn chain A domain 1

3D model

Region: 86 - 163
Aligned: 50
Modelled: 50
Confidence: 50.8%
Identity: 14%
Fold: PTPA-like
Superfamily: PTPA-like
Family: PTPA-like

Phyre2

PDB 2yhb chain A

3D model

Region: 182 - 216
Aligned: 35
Modelled: 35
Confidence: 37.0%
Identity: 20%
PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi domains

Phyre2

PDB 2k88 chain A

3D model

Region: 24 - 54
Aligned: 31
Modelled: 31
Confidence: 34.1%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:vacuolar proton pump subunit g;
PDBTitle: association of subunit d (vma6p) and e (vma4p) with g2 (vma10p) and the nmr solution structure of subunit g (g1-3 59) of the saccharomyces cerevisiae v1vo atpase

Phyre2

PDB 2yha chain A

3D model

Region: 182 - 216
Aligned: 35
Modelled: 35
Confidence: 33.7%
Identity: 20%
PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi2 domains

Phyre2

PDB 1wmh chain A

3D model

Region: 129 - 193
Aligned: 59
Modelled: 65
Confidence: 32.9%
Identity: 19%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 2ktr chain A

3D model

Region: 133 - 188
Aligned: 50
Modelled: 56
Confidence: 24.6%
Identity: 14%
PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs

Phyre2

PDB 1p0o chain A

3D model

Region: 137 - 155
Aligned: 19
Modelled: 19
Confidence: 22.3%
Identity: 21%
PDB header:ribosome
Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1;
PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles

Phyre2

PDB 2kk7 chain A

3D model

Region: 32 - 63
Aligned: 32
Modelled: 32
Confidence: 21.9%
Identity: 9%
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: nmr solution structure of the n terminal domain of subunit e2 (e1-52) of a1ao atp synthase from methanocaldococcus3 jannaschii

Phyre2

PDB 4a1a chain C

3D model

Region: 2 - 84
Aligned: 81
Modelled: 83
Confidence: 20.3%
Identity: 11%
PDB header:ribosome
Chain: C: PDB Molecule:rpl4;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.

Phyre2

PDB 3sma chain D

3D model

Region: 173 - 202
Aligned: 26
Modelled: 30
Confidence: 19.8%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf

Phyre2

PDB 2csb chain A domain 1

3D model

Region: 190 - 206
Aligned: 17
Modelled: 17
Confidence: 19.0%
Identity: 47%
Fold: SAM domain-like
Superfamily: RuvA domain 2-like
Family: Topoisomerase V repeat domain

Phyre2

PDB 2r18 chain A

3D model

Region: 179 - 210
Aligned: 32
Modelled: 32
Confidence: 19.0%
Identity: 25%
PDB header:viral protein
Chain: A: PDB Molecule:capsid assembly protein vp3;
PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses

Phyre2

PDB 2zkm chain X domain 4

3D model

Region: 156 - 235
Aligned: 80
Modelled: 80
Confidence: 18.5%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: PLC-like phosphodiesterases
Family: Mammalian PLC

Phyre2

PDB 1qas chain A domain 3

3D model

Region: 156 - 235
Aligned: 78
Modelled: 80
Confidence: 18.2%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: PLC-like phosphodiesterases
Family: Mammalian PLC

Phyre2

PDB 3ebq chain A

3D model

Region: 175 - 232
Aligned: 56
Modelled: 58
Confidence: 17.2%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold
PDBTitle: crystal structure of human pppde1

Phyre2

PDB 1mo0 chain A

3D model

Region: 167 - 215
Aligned: 49
Modelled: 49
Confidence: 16.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: Triosephosphate isomerase (TIM)
Family: Triosephosphate isomerase (TIM)

Phyre2
1

c2g62A_
2

c3k5bE_
3

d2ixoa1
4

d2ixma1
5

d2ixna1
6

c2yhbA_
7

c2k88A_
8

c2yhaA_
9

d1wmha_
10

c2ktrA_
11

c1p0oA_
12

c2kk7A_
13

c4a1aC_
14

c3smaD_
15

d2csba1
16

c2r18A_
17

d2zkmx4
18

d1qasa3
19

c3ebqA_
20

d1mo0a_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2g62A_



83.5 21 PDB header:hydrolase activator
Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53);
PDBTitle: crystal structure of human ptpa
2c3k5bE_



80.4 14 PDB header:hydrolase
Chain: E: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase
3d2ixoa1



67.7 14 Fold:PTPA-like
Superfamily:PTPA-like
Family:PTPA-like
4d2ixma1



66.2 21 Fold:PTPA-like
Superfamily:PTPA-like
Family:PTPA-like
5d2ixna1



50.8 14 Fold:PTPA-like
Superfamily:PTPA-like
Family:PTPA-like
6c2yhbA_



37.0 20 PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi domains
7c2k88A_



34.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:vacuolar proton pump subunit g;
PDBTitle: association of subunit d (vma6p) and e (vma4p) with g2 (vma10p) and the nmr solution structure of subunit g (g1-3 59) of the saccharomyces cerevisiae v1vo atpase
8c2yhaA_



33.7 20 PDB header:rna binding protein
Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2;
PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi2 domains
9d1wmha_



32.9 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
10c2ktrA_



24.6 14 PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
11c1p0oA_



22.3 21 PDB header:ribosome
Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1;
PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles
12c2kk7A_



21.9 9 PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: nmr solution structure of the n terminal domain of subunit e2 (e1-52) of a1ao atp synthase from methanocaldococcus3 jannaschii
13c4a1aC_



20.3 11 PDB header:ribosome
Chain: C: PDB Molecule:rpl4;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
14c3smaD_



19.8 19 PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
15d2csba1



19.0 47 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
16c2r18A_



19.0 25 PDB header:viral protein
Chain: A: PDB Molecule:capsid assembly protein vp3;
PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses
17d2zkmx4



18.5 20 Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
18d1qasa3



18.2 22 Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
19c3ebqA_



17.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold
PDBTitle: crystal structure of human pppde1
20d1mo0a_



16.0 33 Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
21d1mr1c_



not modelled 15.5 23 Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SMAD4-binding domain of oncoprotein Ski
22c3c18B_



not modelled 15.1 17 PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution
23c3kbgA_



not modelled 14.5 18 PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s4e;
PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28.
24d2od6a1



not modelled 14.4 33 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Marine metagenome family DABB1
25c2jrmA_



not modelled 14.3 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ribosome modulation factor;
PDBTitle: solution nmr structure of ribosome modulation factor vp1593 from2 vibrio parahaemolyticus. northeast structural genomics target vpr55
26d2uz9a1



not modelled 14.0 29 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:SAH/MTA deaminase-like
27c1djyB_



not modelled 13.2 32 PDB header:lipid degradation
Chain: B: PDB Molecule:phosphoinositide-specific phospholipase c,
PDBTitle: phosphoinositide-specific phospholipase c-delta1 from rat2 complexed with inositol-2,4,5-trisphosphate
28d1ubea2



not modelled 13.0 32 Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
29d1mo6a2



not modelled 12.8 28 Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
30c2qsjB_



not modelled 12.8 13 PDB header:transcription
Chain: B: PDB Molecule:dna-binding response regulator, luxr family;
PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi
31c2q1kA_



not modelled 12.7 27 PDB header:chaperone
Chain: A: PDB Molecule:asce;
PDBTitle: cyrstal structure of asce from aeromonas hydrophilla
32d1ii2a2



not modelled 12.6 19 Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
33d1u94a2



not modelled 12.5 32 Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
34d1h3oa_



not modelled 11.9 41 Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
35c1h3oA_



not modelled 11.9 41 PDB header:transcription/tbp-associated factors
Chain: A: PDB Molecule:transcription initiation factor tfiid 135 kda
PDBTitle: crystal structure of the human taf4-taf122 (tafii135-tafii20) complex
36c2yy8B_



not modelled 11.8 18 PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
37c3se4B_



not modelled 11.7 11 PDB header:immune system receptor
Chain: B: PDB Molecule:interferon omega-1;
PDBTitle: human ifnw-ifnar ternary complex
38c3a2nF_



not modelled 11.6 8 PDB header:hydrolase
Chain: F: PDB Molecule:haloalkane dehalogenase;
PDBTitle: crystal structure of dbja (wild type type ii p21)
39c2y6vB_



not modelled 11.5 16 PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal membrane protein lpx1;
PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i)
40c1m2zE_



not modelled 11.3 37 PDB header:hormone/hormone activator
Chain: E: PDB Molecule:nuclear receptor coactivator 2;
PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif
41c3izcW_



not modelled 11.3 17 PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
42c2fjuB_



not modelled 11.3 28 PDB header:signaling protein,apoptosis/hydrolase
Chain: B: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate
PDBTitle: activated rac1 bound to its effector phospholipase c beta 2
43c2xzmW_



not modelled 11.0 24 PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s4;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
44d1jyaa_



not modelled 11.0 25 Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
45c1m2zB_



not modelled 10.8 37 PDB header:hormone/hormone activator
Chain: B: PDB Molecule:nuclear receptor coactivator 2;
PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif
46d1eg3a2



not modelled 10.7 15 Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
47d1b5la_



not modelled 10.3 13 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
48d1l2pa_



not modelled 10.3 14 Fold:Single transmembrane helix
Superfamily:F1F0 ATP synthase subunit B, membrane domain
Family:F1F0 ATP synthase subunit B, membrane domain
49c2pd0D_



not modelled 10.2 29 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: protein cgd2_2020 from cryptosporidium parvum
50d1rh2a_



not modelled 10.2 16 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
51c2dl1A_



not modelled 10.0 10 PDB header:protein transport
Chain: A: PDB Molecule:spartin;
PDBTitle: solution structure of the mit domain from human spartin
52c2dp3A_



not modelled 9.8 22 PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia
53c3izbD_



not modelled 9.5 20 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
54c1yyaA_



not modelled 9.5 14 PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8
55d1jrma_



not modelled 9.3 21 Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
56d2jdia1



not modelled 9.2 17 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
57c3iz6D_



not modelled 9.2 6 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
58c3oaaO_



not modelled 9.0 6 PDB header:hydrolase/transport protein
Chain: O: PDB Molecule:atp synthase gamma chain;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
59c1r2fB_



not modelled 9.0 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:protein (ribonucleotide reductase r2);
PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium
60c3ikmD_



not modelled 8.9 26 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
61d1mj5a_



not modelled 8.9 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloalkane dehalogenase
62d1r2fa_



not modelled 8.8 12 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
63c2h0dB_



not modelled 8.6 28 PDB header:metal binding protein/ligase
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex
64d1asha_



not modelled 8.6 14 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
65d1q59a_



not modelled 8.6 17 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
66c3d8kD_



not modelled 8.4 17 PDB header:hydrolase
Chain: D: PDB Molecule:protein phosphatase 2c;
PDBTitle: crsytal structure of a phosphatase from a toxoplasma gondii
67c4hb1A_



not modelled 8.3 13 PDB header:designed helical bundle
Chain: A: PDB Molecule:dhp1;
PDBTitle: a designed four helix bundle protein.
68c2q8fA_



not modelled 8.2 7 PDB header:transferase
Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1;
PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1
69d1nw3a_



not modelled 8.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
70c1nw3A_



not modelled 8.1 14 PDB header:transferase
Chain: A: PDB Molecule:histone methyltransferase dot1l;
PDBTitle: structure of the catalytic domain of human dot1l, a non-set2 domain nucleosomal histone methyltransferase
71d1xp8a2



not modelled 7.8 16 Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
72d1a77a1



not modelled 7.8 15 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
73c2yysA_



not modelled 7.8 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:proline iminopeptidase-related protein;
PDBTitle: crystal structure of the proline iminopeptidase-related protein2 ttha1809 from thermus thermophilus hb8
74d1joga_



not modelled 7.7 5 Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:Family 1 bi-partite nucleotidyltransferase subunit
75c3eb7B_



not modelled 7.7 10 PDB header:toxin
Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1;
PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution
76d1hx8a1



not modelled 7.6 9 Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:Phosphoinositide-binding clathrin adaptor, domain 2
77d2jq9a1



not modelled 7.6 13 Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
78d1mzga_



not modelled 7.6 21 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
79d1k0wa_



not modelled 7.6 17 Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:AraD-like aldolase/epimerase
80c2xmzA_



not modelled 7.5 14 PDB header:lyase
Chain: A: PDB Molecule:hydrolase, alpha/beta hydrolase fold family;
PDBTitle: structure of menh from s. aureus
81d1ttja_



not modelled 7.5 10 Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
82c4a1dM_



not modelled 7.5 20 PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l22;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
83c3f6cB_



not modelled 7.4 9 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
84c2rreA_



not modelled 7.3 29 PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and function of the n-terminal nucleolin binding domain of2 nuclear valocine containing protein like 2 (nvl2) harboring a3 nucleolar localization signal
85c3e6qL_



not modelled 7.3 20 PDB header:isomerase
Chain: L: PDB Molecule:putative 5-carboxymethyl-2-hydroxymuconate isomerase;
PDBTitle: putative 5-carboxymethyl-2-hydroxymuconate isomerase from pseudomonas2 aeruginosa.
86d1ea0a3



not modelled 7.2 11 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
87d1wfda_



not modelled 7.1 16 Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
88c3lruA_



not modelled 7.0 18 PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-processing-splicing factor 8;
PDBTitle: hprp8 non-native subdomain
89c2xoaA_



not modelled 7.0 11 PDB header:metal transport
Chain: A: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of the n-terminal three domains of the2 skeletal muscle ryanodine receptor (ryr1)
90d1k3ia1



not modelled 6.9 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
91d1fkma1



not modelled 6.9 22 Fold:Left-handed superhelix
Superfamily:Ypt/Rab-GAP domain of gyp1p
Family:Ypt/Rab-GAP domain of gyp1p
92d2cw9a1



not modelled 6.9 31 Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
93d1ukfa_



not modelled 6.9 18 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Avirulence protein Avrpph3
94d1ijdb_



not modelled 6.9 17 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
95d1tuaa1



not modelled 6.9 13 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
96c2o8gJ_



not modelled 6.8 15 PDB header:hydrolase/inhibitor
Chain: J: PDB Molecule:protein phosphatase inhibitor 2;
PDBTitle: rat pp1c gamma complexed with mouse inhibitor-2
97d2gpia1



not modelled 6.7 14 Fold:Shew3726-like
Superfamily:Shew3726-like
Family:Shew3726-like
98c2z7bA_



not modelled 6.6 6 PDB header:lyase
Chain: A: PDB Molecule:mlr6791 protein;
PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase
99c2rmrA_



not modelled 6.5 21 PDB header:transcription
Chain: A: PDB Molecule:paired amphipathic helix protein sin3a;
PDBTitle: solution structure of msin3a pah1 domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0