Email l.a.kelley@imperial.ac.uk Description P75793 Date Thu Jan 5 12:14:12 GMT 2012 Unique Job ID d2fbd53b3753589c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9da_ 100.0 38 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 c2y8nC_ 100.0 28 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 3 c2f3oB_ 100.0 32 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 4 d1h16a_ 100.0 26 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 5 d1qhma_ 100.0 22 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 6 d1hk8a_ 99.4 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 7 c1hk8A_ 99.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 8 d1qkra_ 71.1 24 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 9 d1r0ka1 63.9 28 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 10 c3gr1A_ 63.2 18 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 11 d1q0qa1 48.6 21 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 12 c2jcyA_ 45.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis 13 c3au9A_ 44.5 23 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 14 c1r0lD_ 44.1 28 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 15 c1v9xA_ 42.2 14 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 16 c3odeA_ 38.5 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 17 c3gr0D_ 32.4 18 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 18 c2cs2A_ 30.4 18 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of the second zn-finger domain of2 poly(adp-ribose) polymerase-1 19 c2eghA_ 29.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 20 c1k5hB_ 29.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 21 c1aq5C_ not modelled 26.9 32 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 22 c2f40A_ not modelled 25.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf1455; PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction 23 c2dmjA_ not modelled 24.4 14 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 24 d1vioa2 not modelled 24.3 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 25 d1jvaa3 not modelled 21.2 11 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 26 c2z4tA_ not modelled 20.2 15 PDB header:transferase Chain: A: PDB Molecule:beta-galactoside alpha-2,6-sialyltransferase; PDBTitle: crystal structure of vibrionaceae photobacterium sp. jt-ish-224 2,6-2 sialyltransferase in a ternary complex with donor product cmp and3 accepter substrate lactose 27 d1u5tb1 not modelled 19.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 28 d1v5ra1 not modelled 18.9 44 Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain 29 d1p9ka_ not modelled 18.2 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 30 d2i9ia1 not modelled 17.7 20 Fold:Anticodon-binding domain-like Superfamily:XCC0632-like Family:NLBH-like 31 c2i9iA_ not modelled 17.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of helicobacter pylori protein hp0492 32 d1nh2a2 not modelled 17.3 21 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 33 c2jobA_ not modelled 17.1 14 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 34 c1fuiB_ not modelled 16.9 20 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 35 d1pgja1 not modelled 16.7 27 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 36 d1aisa1 not modelled 16.5 9 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 37 d1nh2a1 not modelled 16.5 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 38 d1i36a1 not modelled 16.4 18 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Conserved hypothetical protein MTH1747 39 c2q01A_ not modelled 16.1 15 PDB header:isomerase Chain: A: PDB Molecule:uronate isomerase; PDBTitle: crystal structure of glucuronate isomerase from caulobacter crescentus 40 d1qnaa2 not modelled 16.1 21 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 41 d1irxa1 not modelled 15.8 13 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family:C-terminal domain of class I lysyl-tRNA synthetase 42 d1r0ka3 not modelled 15.8 30 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 43 d1mp9a1 not modelled 15.8 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 44 d1aisa2 not modelled 15.6 33 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 45 c2knjA_ not modelled 15.4 17 PDB header:antimicrobial protein Chain: A: PDB Molecule:microplusin preprotein; PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus 46 d2i15a1 not modelled 15.2 40 Fold:MG296-like Superfamily:MG296-like Family:MG296-like 47 c3inpA_ not modelled 14.9 16 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 48 d1uj8a1 not modelled 14.7 12 Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like 49 c3eagA_ not modelled 14.6 22 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides 50 d1qnaa1 not modelled 14.4 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 51 d1dq3a4 not modelled 14.4 19 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 52 d1mp9a2 not modelled 14.3 33 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 53 c2khvA_ not modelled 14.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b. 54 d1rlfa_ not modelled 13.8 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 55 d1q5qh_ not modelled 13.4 18 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 56 d1fi3a_ not modelled 13.3 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 57 d1nj1a3 not modelled 13.3 17 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 58 d1cdwa2 not modelled 13.3 16 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 59 c3a14B_ not modelled 13.1 16 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 60 d1rypi_ not modelled 12.9 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 61 c1r8jB_ not modelled 12.9 26 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 62 d2bm3a1 not modelled 12.9 17 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 63 d1cdwa1 not modelled 12.8 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 64 d1tyja1 not modelled 12.5 22 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 65 d1yuaa2 not modelled 12.5 44 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 66 c3ol0C_ not modelled 12.3 17 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 67 c2b59A_ not modelled 12.3 17 PDB header:hydrolase/structural protein Chain: A: PDB Molecule:cog1196: chromosome segregation atpases; PDBTitle: the type ii cohesin dockerin complex 68 c3d36B_ not modelled 12.2 13 PDB header:transferase/transferase inhibitor Chain: B: PDB Molecule:sporulation kinase b; PDBTitle: how to switch off a histidine kinase: crystal structure of2 geobacillus stearothermophilus kinb with the inhibitor sda 69 d1ciia1 not modelled 12.2 28 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 70 c2vpmB_ not modelled 12.1 11 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 71 c3ghpA_ not modelled 12.1 26 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker) 72 c3thgA_ not modelled 12.0 31 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 73 c2a7oA_ not modelled 12.0 18 PDB header:transcription Chain: A: PDB Molecule:huntingtin interacting protein b; PDBTitle: solution structure of the hset2/hypb sri domain 74 c2kwvA_ not modelled 11.9 36 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin 75 d1w7pd1 not modelled 11.9 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 76 c3fnkA_ not modelled 11.6 26 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus 77 c1u57A_ not modelled 11.6 15 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: nmr structure of the (345-392)gag sequence from hiv-1 78 c2hx6A_ not modelled 11.5 38 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 79 c3nzwH_ not modelled 11.3 19 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:proteasome component pup1; PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b 80 d1aoya_ not modelled 11.1 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 81 d1zv9a1 not modelled 11.1 30 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 82 c3vjjA_ not modelled 11.1 18 PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1 83 c3oryA_ not modelled 11.1 14 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 84 d1st6a7 not modelled 11.0 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 85 d1uw0a_ not modelled 10.9 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:PARP-type zinc finger 86 c2i6lB_ not modelled 10.8 17 PDB header:transferase Chain: B: PDB Molecule:mitogen-activated protein kinase 6; PDBTitle: crystal structure of human mitogen activated protein kinase2 6 (mapk6) 87 c2d2rA_ not modelled 10.8 14 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 88 d1hx8a1 not modelled 10.7 13 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:Phosphoinositide-binding clathrin adaptor, domain 2 89 d2gykb1 not modelled 10.6 22 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 90 d2g39a2 not modelled 10.6 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 91 c3ltiA_ not modelled 10.5 10 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 92 c2fhgC_ not modelled 10.2 11 PDB header:hydrolase Chain: C: PDB Molecule:proteasome, beta subunit; PDBTitle: crystal structure of mycobacterial tuberculosis proteasome 93 d2jb0b1 not modelled 10.0 17 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 94 d1x9na2 not modelled 10.0 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 95 c3kh0A_ not modelled 9.8 17 PDB header:signaling protein Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator; PDBTitle: crystal structure of the ras-association (ra) domain of2 ralgds 96 c7ceiB_ not modelled 9.8 18 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 97 d1r6oc1 not modelled 9.6 26 Fold:ClpS-like Superfamily:ClpS-like Family:Adaptor protein ClpS (YljA) 98 d1sj8a2 not modelled 9.5 17 Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain 99 d1lfda_ not modelled 9.4 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD