Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	F	S	L	G	K	H	P	H	V	E	L	C	D	L	L	K	L	E	G	W	S	E	S	G	A	Q	A	K	I	A	I	A	E	G	Q	V	K	V	D	G	A	V	E	T	R	K	R	C	K	I	V	A	G	Q	T	V	S
Secondary structure
SS confidence
Disorder		?	?	?					?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70
Sequence		F	A	G	H	S	V	Q	V	V	A
Secondary structure
SS confidence
Disorder										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1p9k chain A Region: 1 - 70 Aligned: 70 Modelled: 70 Confidence: 99.9% Identity: 100% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: YbcJ-like Phyre2 PDB 1c06 chain A Region: 12 - 64 Aligned: 53 Modelled: 53 Confidence: 99.5% Identity: 23% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 2uub chain D domain 1 Region: 12 - 64 Aligned: 53 Modelled: 53 Confidence: 99.5% Identity: 19% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 1vio chain A domain 2 Region: 12 - 69 Aligned: 57 Modelled: 58 Confidence: 99.5% Identity: 18% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Pseudouridine synthase RsuA N-terminal domain Phyre2 PDB 1dm9 chain A Region: 9 - 69 Aligned: 60 Modelled: 61 Confidence: 99.5% Identity: 18% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd Phyre2 PDB 1dm9 chain A Region: 9 - 69 Aligned: 60 Modelled: 61 Confidence: 99.5% Identity: 18% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Heat shock protein 15 kD Phyre2 PDB 2gy9 chain D domain 1 Region: 12 - 64 Aligned: 53 Modelled: 53 Confidence: 99.5% Identity: 17% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 3bbn chain D Region: 12 - 64 Aligned: 53 Modelled: 53 Confidence: 99.5% Identity: 13% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2cqj chain A Region: 13 - 66 Aligned: 54 Modelled: 54 Confidence: 99.4% Identity: 17% PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog Phyre2 PDB 3dh3 chain C Region: 9 - 66 Aligned: 56 Modelled: 58 Confidence: 99.4% Identity: 21% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 1ksk chain A Region: 10 - 66 Aligned: 56 Modelled: 54 Confidence: 99.3% Identity: 23% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Phyre2 PDB 3hp7 chain A Region: 10 - 70 Aligned: 61 Modelled: 61 Confidence: 99.2% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. Phyre2 PDB 2k6p chain A Region: 12 - 62 Aligned: 50 Modelled: 51 Confidence: 99.1% Identity: 20% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 Phyre2 PDB 1vio chain A Region: 11 - 65 Aligned: 54 Modelled: 55 Confidence: 99.1% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 PDB 1s1h chain D Region: 13 - 65 Aligned: 53 Modelled: 53 Confidence: 99.1% Identity: 17% PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 2xzm chain D Region: 13 - 63 Aligned: 51 Modelled: 51 Confidence: 99.1% Identity: 14% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 3iz6 chain C Region: 13 - 63 Aligned: 51 Modelled: 51 Confidence: 98.5% Identity: 16% PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1h3f chain A domain 2 Region: 9 - 61 Aligned: 53 Modelled: 53 Confidence: 98.4% Identity: 21% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 PDB 1jh3 chain A Region: 1 - 69 Aligned: 68 Modelled: 69 Confidence: 98.3% Identity: 22% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 PDB 2jan chain D Region: 1 - 69 Aligned: 69 Modelled: 69 Confidence: 98.2% Identity: 22% PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state Phyre2 1 d1p9ka_ 2 d1c06a_ 3 d2uubd1 4 d1vioa2 5 c1dm9A_ 6 d1dm9a_ 7 d2gy9d1 8 c3bbnD_ 9 c2cqjA_ 10 c3dh3C_ 11 c1kskA_ 12 c3hp7A_ 13 c2k6pA_ 14 c1vioA_ 15 c1s1hD_ 16 c2xzmD_ 17 c3iz6C_ 18 d1h3fa2 19 d1jh3a_ 20 c2janD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1p9ka_ 99.9 100 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 2 d1c06a_ 99.5 23 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 3 d2uubd1 99.5 19 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 4 d1vioa2 99.5 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 5 c1dm9A_ 99.5 18 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 6 d1dm9a_ 99.5 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 7 d2gy9d1 99.5 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 8 c3bbnD_ 99.5 13 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 9 c2cqjA_ 99.4 17 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 10 c3dh3C_ 99.4 21 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 11 c1kskA_ 99.3 23 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 12 c3hp7A_ 99.2 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 13 c2k6pA_ 99.1 20 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 14 c1vioA_ 99.1 19 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 15 c1s1hD_ 99.1 17 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 16 c2xzmD_ 99.1 14 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 17 c3iz6C_ 98.5 16 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 18 d1h3fa2 98.4 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 19 d1jh3a_ 98.3 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 20 c2janD_ 98.2 22 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 21 c1h3eA_ not modelled 98.1 21 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 22 d1kska3 not modelled 98.1 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 23 c3kbgA_ not modelled 98.0 27 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 24 c2xzmW_ not modelled 97.5 22 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 25 c3iz6D_ not modelled 97.2 18 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 26 c3izbD_ not modelled 97.0 21 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 27 c2ktlA_ not modelled 85.5 18 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans 28 d2g1la1 not modelled 78.9 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 29 d1zud21 not modelled 74.8 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 30 d1xnea_ not modelled 72.2 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 31 c3poaA_ not modelled 71.2 13 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 32 c2eh0A_ not modelled 71.2 12 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 33 d1s04a_ not modelled 71.2 30 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 34 c2qjlA_ not modelled 71.1 19 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 35 c3gqsB_ not modelled 66.8 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 36 c3rpfC_ not modelled 66.4 8 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 37 d2affa1 not modelled 66.1 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 38 c3hvzB_ not modelled 66.1 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 39 d2ff4a3 not modelled 63.7 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 40 c3cwiA_ not modelled 63.0 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 41 d1fm0d_ not modelled 62.3 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 42 c3po0A_ not modelled 61.8 17 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 43 c2kmmA_ not modelled 61.2 19 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 44 c2jqlA_ not modelled 59.8 12 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 45 c3fm8A_ not modelled 59.3 12 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 46 c1r21A_ not modelled 58.5 15 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 47 c3dwmA_ not modelled 58.3 17 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 48 d1xo3a_ not modelled 53.9 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 49 d1vjka_ not modelled 53.1 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 50 c2qieB_ not modelled 51.1 30 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 51 d1tkea1 not modelled 49.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 52 d1rwsa_ not modelled 49.6 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 53 d1wlna1 not modelled 48.2 21 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 54 c2jv2A_ not modelled 48.0 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1500; PDBTitle: solution structure of the n-terminal domain of ph1500 55 d1v8ca1 not modelled 44.2 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 56 c2kklA_ not modelled 43.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 57 c2g1eA_ not modelled 43.3 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 58 c1v8cA_ not modelled 42.0 17 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 59 d2hzab1 not modelled 41.1 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 60 d2hzaa1 not modelled 39.4 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 61 d2cu3a1 not modelled 38.8 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 62 c3hx1B_ not modelled 37.1 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 63 d2f9ha1 not modelled 35.1 5 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 64 c2l52A_ not modelled 34.5 4 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 65 d1wxqa2 not modelled 33.8 5 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 66 d1wgka_ not modelled 33.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 67 d2bj7a1 not modelled 33.1 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 68 c2k9xA_ not modelled 31.5 30 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 69 c3er0A_ not modelled 31.0 8 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae 70 d1nyra2 not modelled 30.7 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 71 d1g3ga_ not modelled 30.3 8 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 72 c1yj5C_ not modelled 29.9 8 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 73 d1tygb_ not modelled 29.9 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 74 d1ueba1 not modelled 29.2 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 75 c2ff4B_ not modelled 29.1 16 PDB header:transcription Chain: B: PDB Molecule:probable regulatory protein embr; PDBTitle: mycobacterium tuberculosis embr in complex with low affinity2 phosphopeptide 76 d1iz6a1 not modelled 29.1 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 77 c3tdqB_ not modelled 28.8 23 PDB header:cell adhesion Chain: B: PDB Molecule:pily2 protein; PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution 78 c2kl0A_ not modelled 28.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 79 d1g6ga_ not modelled 28.1 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 80 c1q5vB_ not modelled 27.6 21 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 81 c3kt9A_ not modelled 27.5 15 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 82 d2piea1 not modelled 27.1 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 83 c3a5zF_ not modelled 26.8 22 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 84 c1gxcA_ not modelled 26.2 12 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 85 d1gxca_ not modelled 26.2 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 86 c3elsA_ not modelled 25.8 8 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 87 c1iz6B_ not modelled 25.6 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii 88 c2bj3D_ not modelled 24.5 14 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 89 d1ryja_ not modelled 24.4 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 90 d1yjma1 not modelled 23.8 7 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 91 d1ed7a_ not modelled 23.8 23 Fold:WW domain-like Superfamily:Carbohydrate binding domain Family:Carbohydrate binding domain 92 c3hksB_ not modelled 23.5 15 PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana 93 d1lgpa_ not modelled 22.3 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 94 c1xtdA_ not modelled 20.8 16 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 95 c1tygG_ not modelled 20.8 9 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 96 c3gmgB_ not modelled 20.0 4 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 97 c2v9vA_ not modelled 19.2 8 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 98 c1wwtA_ not modelled 18.6 18 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 99 d1uhta_ not modelled 18.3 6 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0