Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	L	N	Y	F	A	L	G	V	L	I	F	V	F	L	V	I	F	Y	G	I	I	A	I	H	D	I	P	Y	L	I	A	K	K	R	N	H	P	H	A	D	A	I	H	T	A	G	W	V	S	L	F	T	L	H	V	I	W	P
Secondary structure
SS confidence
Disorder		?																																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	L	W	I	W	A	T	L	Y	Q	P	E	R	G	W	G	M	Q	S	H	V	A	S	Q	E	K	A	T	D	P	E	I	A	A	L	S	D	R	I	S	R	L	E	H	Q	L	A	A	E	K	K	T	D	Y	S	T	F	P	E	I
Secondary structure
SS confidence
Disorder													?		?			?	?	?	?	?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2e76 chain H Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 46.4% Identity: 30% PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus Phyre2 PDB 2e74 chain H Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 46.4% Identity: 30% PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus Phyre2 PDB 2e75 chain H Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 46.4% Identity: 30% PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus Phyre2 PDB 1u0i chain A Region: 91 - 116 Aligned: 26 Modelled: 21 Confidence: 42.4% Identity: 42% PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer Phyre2 PDB 2e74 chain H domain 1 Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 41.9% Identity: 30% Fold: Single transmembrane helix Superfamily: PetN subunit of the cytochrome b6f complex Family: PetN subunit of the cytochrome b6f complex Phyre2 PDB 1ce0 chain B Region: 91 - 111 Aligned: 21 Modelled: 21 Confidence: 37.8% Identity: 29% PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model Phyre2 PDB 3he5 chain A Region: 92 - 114 Aligned: 23 Modelled: 23 Confidence: 37.6% Identity: 26% PDB header:de novo protein Chain: A: PDB Molecule:synzip1; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1 Phyre2 PDB 3g9r chain F Region: 91 - 111 Aligned: 21 Modelled: 21 Confidence: 37.5% Identity: 33% PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation Phyre2 PDB 3lt7 chain D Region: 88 - 109 Aligned: 22 Modelled: 22 Confidence: 36.7% Identity: 32% PDB header:cell adhesion Chain: D: PDB Molecule:adhesin yada; PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure Phyre2 PDB 1u2u chain A Region: 91 - 105 Aligned: 15 Modelled: 15 Confidence: 36.3% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper Phyre2 PDB 1vf5 chain H Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 33.9% Identity: 30% PDB header:photosynthesis Chain: H: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus Phyre2 PDB 2lf0 chain A Region: 78 - 110 Aligned: 33 Modelled: 33 Confidence: 32.8% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 Phyre2 PDB 3ci9 chain B Region: 85 - 107 Aligned: 23 Modelled: 23 Confidence: 32.5% Identity: 30% PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 Phyre2 PDB 2zt9 chain H Region: 43 - 64 Aligned: 21 Modelled: 22 Confidence: 32.2% Identity: 43% PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120 Phyre2 PDB 1hf9 chain B Region: 77 - 112 Aligned: 36 Modelled: 36 Confidence: 31.3% Identity: 19% PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1 Phyre2 PDB 1vf5 chain U Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 30.7% Identity: 30% PDB header:photosynthesis Chain: U: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus Phyre2 PDB 1aq5 chain C Region: 77 - 106 Aligned: 30 Modelled: 30 Confidence: 28.8% Identity: 23% PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures Phyre2 PDB 1v54 chain M Region: 50 - 69 Aligned: 20 Modelled: 20 Confidence: 27.9% Identity: 25% Fold: Single transmembrane helix Superfamily: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Phyre2 PDB 2y69 chain Z Region: 50 - 69 Aligned: 20 Modelled: 20 Confidence: 26.9% Identity: 25% PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen Phyre2 PDB 2d2c chain H Region: 44 - 64 Aligned: 20 Modelled: 21 Confidence: 26.5% Identity: 30% PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii; PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus Phyre2 1 c2e76H_ 2 c2e74H_ 3 c2e75H_ 4 c1u0iA_ 5 d2e74h1 6 c1ce0B_ 7 c3he5A_ 8 c3g9rF_ 9 c3lt7D_ 10 c1u2uA_ 11 c1vf5H_ 12 c2lf0A_ 13 c3ci9B_ 14 c2zt9H_ 15 c1hf9B_ 16 c1vf5U_ 17 c1aq5C_ 18 d1v54m_ 19 c2y69Z_ 20 c2d2cH_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2e76H_ 46.4 30 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 2 c2e74H_ 46.4 30 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 3 c2e75H_ 46.4 30 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 4 c1u0iA_ 42.4 42 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 5 d2e74h1 41.9 30 Fold:Single transmembrane helix Superfamily:PetN subunit of the cytochrome b6f complex Family:PetN subunit of the cytochrome b6f complex 6 c1ce0B_ 37.8 29 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 7 c3he5A_ 37.6 26 PDB header:de novo protein Chain: A: PDB Molecule:synzip1; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1 8 c3g9rF_ 37.5 33 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 9 c3lt7D_ 36.7 32 PDB header:cell adhesion Chain: D: PDB Molecule:adhesin yada; PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure 10 c1u2uA_ 36.3 33 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 11 c1vf5H_ 33.9 30 PDB header:photosynthesis Chain: H: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 12 c2lf0A_ 32.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 13 c3ci9B_ 32.5 30 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 14 c2zt9H_ 32.2 43 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120 15 c1hf9B_ 31.3 19 PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1 16 c1vf5U_ 30.7 30 PDB header:photosynthesis Chain: U: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 17 c1aq5C_ 28.8 23 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 18 d1v54m_ 27.9 25 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 19 c2y69Z_ 26.9 25 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 20 c2d2cH_ 26.5 30 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii; PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus 21 c2d2cU_ not modelled 26.5 30 PDB header:photosynthesis Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii; PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus 22 c2ke4A_ not modelled 25.7 12 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 23 c3m9hB_ not modelled 23.9 24 PDB header:chaperone Chain: B: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa 24 c2qa7B_ not modelled 23.6 27 PDB header:actin binding Chain: B: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi) 25 c3rylB_ not modelled 22.3 42 PDB header:protein binding Chain: B: PDB Molecule:protein vpa1370; PDBTitle: dimerization domain of vibrio parahemolyticus vopl 26 d2gr7a1 not modelled 19.7 20 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 27 c2gr7C_ not modelled 19.7 20 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 28 c3p8cE_ not modelled 19.5 21 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 29 c1hwtC_ not modelled 18.4 26 PDB header:gene regulation/dna Chain: C: PDB Molecule:protein (heme activator protein); PDBTitle: structure of a hap1/dna complex reveals dramatically2 asymmetric dna binding by a homodimeric protein 30 c1ij2C_ not modelled 17.7 27 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 31 c3k7zA_ not modelled 17.4 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 32 c1rb6C_ not modelled 17.4 27 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 33 c1swiA_ not modelled 17.4 27 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 34 c1rb1A_ not modelled 17.4 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 35 c1rb1B_ not modelled 17.4 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 36 c3k7zB_ not modelled 17.4 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 37 d1vl2a2 not modelled 16.8 21 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 38 c1ij3C_ not modelled 16.6 27 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 39 c1ij3B_ not modelled 16.6 27 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 40 d1slqa_ not modelled 16.2 8 Fold:VP4 membrane interaction domain Superfamily:VP4 membrane interaction domain Family:VP4 membrane interaction domain 41 d1ioka2 not modelled 15.9 32 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 42 d1ta8a_ not modelled 15.9 18 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 43 c1ztaA_ not modelled 15.8 29 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 44 c1ij2B_ not modelled 15.6 27 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 45 c3pn1A_ not modelled 15.4 21 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 46 c2ergA_ not modelled 14.1 21 PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex 47 c2xzrA_ not modelled 12.3 13 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 48 c2yy0D_ not modelled 12.1 11 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 49 c2zt9E_ not modelled 12.0 27 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120 50 c1kddC_ not modelled 12.0 25 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 51 d1b04a_ not modelled 12.0 24 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 52 c1kddA_ not modelled 11.7 25 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 53 c1kddF_ not modelled 11.7 25 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 54 c1zauA_ not modelled 11.1 30 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis 55 c2owoA_ not modelled 11.1 21 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 56 d1uuja_ not modelled 10.6 25 Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 57 c3hroA_ not modelled 10.2 33 PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential (trp) channel PDBTitle: crystal structure of a c-terminal coiled coil domain of2 transient receptor potential (trp) channel subfamily p3 member 2 (trpp2, polycystic kidney disease 2) 58 c1kd9A_ not modelled 10.0 31 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 59 c1kd9F_ not modelled 10.0 31 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 60 c1kd9C_ not modelled 10.0 31 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 61 c3gw6F_ not modelled 10.0 27 PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone 62 c3h5fB_ not modelled 9.9 43 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 63 c3h5fC_ not modelled 9.9 43 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 64 c3h5gA_ not modelled 9.9 43 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 65 c3h5gB_ not modelled 9.9 43 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 66 c3h5gC_ not modelled 9.9 43 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 67 c3h5fA_ not modelled 9.9 43 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 68 c2xv5A_ not modelled 9.9 13 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 69 c2p4vA_ not modelled 9.8 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 70 c1fmhA_ not modelled 9.6 28 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 71 c1t3jA_ not modelled 9.6 38 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 72 c3jslA_ not modelled 9.5 21 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus 73 c1ci6B_ not modelled 9.1 17 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 74 d1lrza1 not modelled 8.8 14 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Methicillin resistance protein FemA probable tRNA-binding arm 75 d1oela2 not modelled 8.7 27 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 76 c1grjA_ not modelled 8.4 21 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 77 c3swfA_ not modelled 8.3 26 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 78 c2o7hF_ not modelled 8.1 22 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 79 c2dl1A_ not modelled 8.1 15 PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin 80 c2rkhA_ not modelled 7.4 38 PDB header:transcription Chain: A: PDB Molecule:putative apha-like transcription factor; PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution 81 d1vlia2 not modelled 7.4 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 82 c3hlsE_ not modelled 7.3 18 PDB header:signaling protein Chain: E: PDB Molecule:guanylate cyclase soluble subunit beta-1; PDBTitle: crystal structure of the signaling helix coiled-coil doimain2 of the beta-1 subunit of the soluble guanylyl cyclase 83 c1gk6B_ not modelled 7.2 17 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 84 d1seta1 not modelled 7.1 0 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 85 c1yjgE_ not modelled 7.1 14 PDB header:immune system Chain: E: PDB Molecule:surface protein vspa; PDBTitle: variable small protein 1 of borrelia turicatae (vspa or vsp1) 86 d2zdra2 not modelled 7.0 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 87 c2akfA_ not modelled 6.9 36 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 88 c2akfB_ not modelled 6.9 36 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 89 c2akfC_ not modelled 6.9 36 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 90 c3nmdA_ not modelled 6.9 21 PDB header:transferase Chain: A: PDB Molecule:cgmp dependent protein kinase; PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta 91 c2wl2B_ not modelled 6.8 19 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 92 d1v9pa3 not modelled 6.7 24 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 93 c3o3nA_ not modelled 6.6 21 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 94 c2w6bA_ not modelled 6.6 25 PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7; PDBTitle: crystal structure of the trimeric beta-pix coiled-coil2 domain 95 d1sjpa2 not modelled 6.5 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 96 d1kida_ not modelled 6.5 32 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 97 c3m0dC_ not modelled 6.5 26 PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex 98 c2pnvA_ not modelled 6.5 23 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 99 c2zfcB_ not modelled 6.4 25 PDB header:viral protein Chain: B: PDB Molecule:hiv-1 gp41; PDBTitle: x-ray crystal structure of an engineered n-terminal hiv-12 gp41 trimer with enhanced stability and potency

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0