PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yjgE_

Fold library id	PDB Header	Molecule	Title
c1yjgE_	PDB header: immune system	Chain: E: PDB Molecule: surface protein vspa;	PDBTitle: variable small protein 1 of borrelia turicatae (vspa or2 vsp1)

Links to external resources
Added to library: Tue Mar 16 12:17:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T K N I T D A V A F A K S V K D V H T L V K S I D E L A K A I G K K I G A N G L E T D A D K N A K L I S G A Y S V I S A V D T K L A S L E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T
S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K V G I S D D L K G K I T T V K N A S T S F L T K A K S K T A D L G K D D V K D A D A K T A I D I A D T G A K D K G A E E L I K L N T A I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T S S S
T T
S S
T T T

. . . . . . . . . 150 . . . . . . .

Sequence A L L T S A E A A V T A A I N A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	K	N	I	T	D	A	V	A	F	A	K	S	V	K	D	V	H	T	L	V	K	S	I	D	E	L	A	K	A	I	G	K	K	I	G	A	N	G	L	E	T	D	A	D	K	N	A	K	L	I	S	G	A	Y	S	V	I	S	A	V	D	T	K	L	A	S	L	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T	T	T					T	T							S																									T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	V	G	I	S	D	D	L	K	G	K	I	T	T	V	K	N	A	S	T	S	F	L	T	K	A	K	S	K	T	A	D	L	G	K	D	D	V	K	D	A	D	A	K	T	A	I	D	I	A	D	T	G	A	K	D	K	G	A	E	E	L	I	K	L	N	T	A	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																										T					S	S	S													T	T		S	S			T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Sequence	A	L	L	T	S	A	E	A	A	V	T	A	A	I	N	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T