PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3rylB_

Fold library id	PDB Header	Molecule	Title
c3rylB_	PDB header: protein binding	Chain: B: PDB Molecule: protein vpa1370;	PDBTitle: dimerization domain of vibrio parahemolyticus vopl

Links to external resources
Added to library: Sat Sep 3 09:48:14 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X R L L S E D L F K Q S P K L S E Q E L D E L A N N L A D Y L F Q A A D I D W H Q V I S E K T R G L T T E E X A K S E H R Y V Q A F C R E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
S
S S S S T T T T
S S
S T T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L K Y P D C Y K S V I D V A L K R L Q T G R E R L F T T T D E K G N R E L K K G D A I L E S A I N A A R X A I S T E E K N T I L S N N V K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T T T S
T T
B T T B
S S
T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A T F E V F C E L P C X D G F A E Q N G K T A F Y A L R A G F Y S A F K N T D T A K Q D I T K F X K D N L Q A G F S G Y S Y Q G L T N R V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S G G G T T T
S G G G S T T
T T S

. . . . . . . . . 220

Sequence Q L E A Q L A A L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	R	L	L	S	E	D	L	F	K	Q	S	P	K	L	S	E	Q	E	L	D	E	L	A	N	N	L	A	D	Y	L	F	Q	A	A	D	I	D	W	H	Q	V	I	S	E	K	T	R	G	L	T	T	E	E	X	A	K	S	E	H	R	Y	V	Q	A	F	C	R	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S						S	T	T																				S					S	S	S	S	T	T	T	T		S	S				S	T	T	T	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	K	Y	P	D	C	Y	K	S	V	I	D	V	A	L	K	R	L	Q	T	G	R	E	R	L	F	T	T	T	D	E	K	G	N	R	E	L	K	K	G	D	A	I	L	E	S	A	I	N	A	A	R	X	A	I	S	T	E	E	K	N	T	I	L	S	N	N	V	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S								T						T	T	T	S		T	T							B	T	T	B							S	S			T										T											S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	T	F	E	V	F	C	E	L	P	C	X	D	G	F	A	E	Q	N	G	K	T	A	F	Y	A	L	R	A	G	F	Y	S	A	F	K	N	T	D	T	A	K	Q	D	I	T	K	F	X	K	D	N	L	Q	A	G	F	S	G	Y	S	Y	Q	G	L	T	N	R	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	G	G	G	T	T																				T			S	G	G	G															S	T	T		T	T	S
	.	.	.	.	.	.	.	.	.	220
Sequence	Q	L	E	A	Q	L	A	A	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)