Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	L	L	I	D	N	Y	D	S	F	T	W	N	L	Y	Q	Y	F	C	E	L	G	A	D	V	L	V	K	R	N	D	A	L	T	L	A	D	I	D	A	L	K	P	Q	K	I	V	I	S	P	G	P	C	T	P	D	E	A	G
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	S	L	D	V	I	R	H	Y	A	G	R	L	P	I	L	G	V	C	L	G	H	Q	A	M	A	Q	A	F	G	G	K	V	V	R	A	A	K	V	M	H	G	K	T	S	P	I	T	H	N	G	E	G	V	F	R	G	L	A	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	L	T	V	T	R	Y	H	S	L	V	V	E	P	D	S	L	P	A	C	F	D	V	T	A	W	S	E	T	R	E	I	M	G	I	R	H	R	Q	W	D	L	E	G	V	Q	F	H	P	E	S	I	L	S	E	Q	G	H	Q	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.
Sequence		L	A	N	F	L	H	R
Secondary structure
SS confidence
Disorder								?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qdl chain B Region: 1 - 187 Aligned: 185 Modelled: 187 Confidence: 100.0% Identity: 49% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2ywc chain C Region: 1 - 186 Aligned: 182 Modelled: 185 Confidence: 100.0% Identity: 32% PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp Phyre2 PDB 1i7q chain B Region: 2 - 186 Aligned: 182 Modelled: 185 Confidence: 100.0% Identity: 45% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1gpm chain D Region: 2 - 187 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 26% PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate Phyre2 PDB 1wl8 chain A domain 1 Region: 1 - 186 Aligned: 181 Modelled: 186 Confidence: 100.0% Identity: 33% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2vxo chain B Region: 2 - 187 Aligned: 179 Modelled: 186 Confidence: 100.0% Identity: 28% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp Phyre2 PDB 1gpm chain A domain 2 Region: 2 - 187 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 26% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1i1q chain B Region: 2 - 186 Aligned: 176 Modelled: 178 Confidence: 100.0% Identity: 46% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3r74 chain B Region: 2 - 185 Aligned: 176 Modelled: 184 Confidence: 100.0% Identity: 24% PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 Phyre2 PDB 2a9v chain A domain 1 Region: 2 - 185 Aligned: 179 Modelled: 184 Confidence: 100.0% Identity: 30% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3tqi chain B Region: 2 - 187 Aligned: 174 Modelled: 184 Confidence: 100.0% Identity: 29% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii Phyre2 PDB 1kee chain H Region: 2 - 186 Aligned: 175 Modelled: 185 Confidence: 100.0% Identity: 23% PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin Phyre2 PDB 1a9x chain B domain 2 Region: 2 - 186 Aligned: 175 Modelled: 185 Confidence: 100.0% Identity: 23% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2vpi chain A Region: 2 - 187 Aligned: 173 Modelled: 186 Confidence: 100.0% Identity: 29% PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain Phyre2 PDB 3uow chain B Region: 2 - 187 Aligned: 173 Modelled: 186 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum Phyre2 PDB 1jvn chain B Region: 2 - 187 Aligned: 178 Modelled: 186 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites Phyre2 PDB 3l83 chain A Region: 2 - 186 Aligned: 176 Modelled: 185 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus Phyre2 PDB 3l7n chain A Region: 2 - 186 Aligned: 176 Modelled: 185 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c Phyre2 PDB 1jvn chain A domain 2 Region: 1 - 187 Aligned: 182 Modelled: 187 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1o1y chain A Region: 2 - 186 Aligned: 174 Modelled: 185 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 1 d1qdlb_ 2 c2ywcC_ 3 d1i7qb_ 4 c1gpmD_ 5 d1wl8a1 6 c2vxoB_ 7 d1gpma2 8 d1i1qb_ 9 c3r74B_ 10 d2a9va1 11 c3tqiB_ 12 c1keeH_ 13 d1a9xb2 14 c2vpiA_ 15 c3uowB_ 16 c1jvnB_ 17 c3l83A_ 18 c3l7nA_ 19 d1jvna2 20 d1o1ya_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qdlb_ 100.0 49 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 2 c2ywcC_ 100.0 32 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 3 d1i7qb_ 100.0 45 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 4 c1gpmD_ 100.0 26 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 5 d1wl8a1 100.0 33 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 6 c2vxoB_ 100.0 28 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 7 d1gpma2 100.0 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 8 d1i1qb_ 100.0 46 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 9 c3r74B_ 100.0 24 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 10 d2a9va1 100.0 30 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 11 c3tqiB_ 100.0 29 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 12 c1keeH_ 100.0 23 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 13 d1a9xb2 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 14 c2vpiA_ 100.0 29 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 15 c3uowB_ 100.0 20 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 16 c1jvnB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 17 c3l83A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 18 c3l7nA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 19 d1jvna2 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 20 d1o1ya_ 100.0 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 21 d1ka9h_ not modelled 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 22 d1vcoa1 not modelled 100.0 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 23 d1s1ma1 not modelled 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 24 d1k9vf_ not modelled 100.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 25 c3nvaB_ not modelled 100.0 20 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 26 c2v4uA_ not modelled 100.0 19 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 27 c2w7tA_ not modelled 100.0 20 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 28 c2ad5B_ not modelled 100.0 23 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 29 c3fijD_ not modelled 100.0 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 30 c3d54D_ not modelled 100.0 14 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 31 c1vcnA_ not modelled 100.0 23 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 32 c2issF_ not modelled 100.0 13 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 33 d2nv0a1 not modelled 100.0 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 34 c1l9xA_ not modelled 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 35 d1l9xa_ not modelled 100.0 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 36 d1q7ra_ not modelled 100.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 37 c2ywjA_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 38 c2ywdA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 39 d1t3ta2 not modelled 99.9 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 40 d2abwa1 not modelled 99.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 41 d2ghra1 not modelled 99.9 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 42 c2h2wA_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 43 c1t3tA_ not modelled 99.1 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 44 c3l3bA_ not modelled 98.3 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 45 c3uk7B_ not modelled 98.2 24 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 46 c1sy7B_ not modelled 98.1 20 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 47 d1vhqa_ not modelled 98.1 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 48 d1sy7a1 not modelled 97.8 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 49 c3n7tA_ not modelled 97.8 15 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 50 c3kklA_ not modelled 97.8 19 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 51 c3cneD_ not modelled 97.8 16 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 52 d1qvwa_ not modelled 97.7 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 53 c3l4eA_ not modelled 97.7 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 54 d1p80a1 not modelled 97.6 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 55 d1oi4a1 not modelled 97.5 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 56 d1g2ia_ not modelled 97.4 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 57 c3fseB_ not modelled 97.4 18 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 58 d1fyea_ not modelled 97.3 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 59 d1p5fa_ not modelled 97.2 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 60 d1u9ca_ not modelled 97.1 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 61 d1n57a_ not modelled 97.1 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 62 c3ot1B_ not modelled 97.0 13 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 63 c3f5dA_ not modelled 96.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 64 d2fexa1 not modelled 96.7 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 65 c2vrnA_ not modelled 96.6 10 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 66 c3nooB_ not modelled 96.2 14 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 67 d2ab0a1 not modelled 96.0 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 68 d1t0ba_ not modelled 95.8 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 69 c1p81A_ not modelled 95.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 70 c3efeC_ not modelled 95.5 11 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 71 c3ewnA_ not modelled 95.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 72 c3rhtB_ not modelled 94.6 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:(gatase1)-like protein; PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus 73 c3mgkA_ not modelled 94.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 74 c3bhnA_ not modelled 94.4 12 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 75 d1xhfa1 not modelled 94.1 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 76 c2zwmA_ not modelled 93.9 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 77 c3nhzA_ not modelled 93.6 17 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 78 c1ys7B_ not modelled 93.2 16 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 79 d1w25a1 not modelled 93.0 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 80 c3t6kB_ not modelled 92.9 21 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 81 c2j48A_ not modelled 92.8 19 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 82 d1ny5a1 not modelled 92.4 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 83 d1mvoa_ not modelled 92.4 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 84 d1peya_ not modelled 92.1 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 85 c2ayxA_ not modelled 92.0 16 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 86 c3graA_ not modelled 92.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida 87 c3en0A_ not modelled 91.9 13 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 88 c3gt7A_ not modelled 91.9 14 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 89 c3c3mA_ not modelled 91.8 13 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 90 d1krwa_ not modelled 91.6 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 91 d1kgsa2 not modelled 91.5 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 92 d2gk3a1 not modelled 91.5 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like 93 d1ys7a2 not modelled 91.4 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 94 c2an1D_ not modelled 91.4 22 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 95 d2a9pa1 not modelled 91.4 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c3lteH_ not modelled 91.3 12 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 97 c3cg4A_ not modelled 91.0 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 98 c2gwrA_ not modelled 90.9 17 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 99 d1zgza1 not modelled 90.9 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 100 c3cfyA_ not modelled 90.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 101 c2qzjC_ not modelled 90.7 18 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 102 d1dbwa_ not modelled 90.6 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 103 c3i42A_ not modelled 90.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 104 d2pl1a1 not modelled 90.3 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 105 c3ej6D_ not modelled 90.2 22 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 106 d1zesa1 not modelled 90.1 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 107 c2oqrA_ not modelled 90.1 11 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 108 d1qkka_ not modelled 89.7 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 109 c3hv2B_ not modelled 89.6 13 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 110 c2zayA_ not modelled 89.6 12 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 111 c2hqoA_ not modelled 89.6 13 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 112 c3h5iA_ not modelled 89.5 9 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 113 d1xi8a3 not modelled 89.5 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 114 c3sozC_ not modelled 89.5 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:cytoplasmic protein stm1381; PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2 115 c1z0zC_ not modelled 89.3 19 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 116 c3hdvB_ not modelled 89.3 12 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 117 d1z0sa1 not modelled 89.1 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 118 d1mb3a_ not modelled 89.0 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 119 d1yioa2 not modelled 89.0 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 120 c3a0rB_ not modelled 88.9 12 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0